Wall clock time and date at job start Tue Mar 31 2020 18:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46717 * 2 1 4 4 H 1.08995 * 109.47913 * 305.00248 * 3 2 1 5 5 C 1.53002 * 109.47153 * 65.00600 * 3 2 1 6 6 C 1.50706 * 109.46905 * 184.99874 * 3 2 1 7 7 C 1.41259 * 126.70980 * 275.27059 * 6 3 2 8 8 C 1.36823 * 103.84746 * 180.13684 * 7 6 3 9 9 C 1.47516 * 126.94094 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00084 * 359.70676 * 9 8 7 11 11 N 1.34777 * 119.99777 * 179.70926 * 9 8 7 12 12 C 1.46494 * 119.99772 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47098 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.70541 * 60.23923 * 13 12 11 15 15 C 1.53618 * 109.66871 * 180.83284 * 13 12 11 16 16 C 1.53041 * 109.24644 * 174.54846 * 15 13 12 17 17 C 1.53038 * 109.53669 * 298.51210 * 16 15 13 18 18 C 1.53196 * 109.31463 * 61.36198 * 17 16 15 19 19 N 1.46923 * 108.77484 * 305.36737 * 18 17 16 20 20 C 1.36935 * 120.62836 * 233.58717 * 19 18 17 21 21 H 1.08004 * 119.99989 * 148.79850 * 20 19 18 22 22 C 1.38809 * 120.00013 * 329.06472 * 20 19 18 23 23 N 1.31616 * 120.00113 * 345.69414 * 22 20 19 24 24 Si 1.86801 * 119.99939 * 165.68955 * 22 20 19 25 25 H 1.48495 * 109.47230 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46891 * 120.00683 * 24 22 20 27 27 H 1.48500 * 109.47160 * 240.00390 * 24 22 20 28 28 O 1.34634 * 106.11392 * 359.66498 * 8 7 6 29 29 N 1.20889 * 111.46556 * 0.22728 * 28 8 7 30 30 H 1.09005 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47042 * 299.99391 * 1 2 3 32 32 H 1.09000 * 109.47182 * 59.99421 * 1 2 3 33 33 H 1.09007 * 109.46668 * 240.00414 * 2 1 3 34 34 H 1.08993 * 109.46939 * 120.00334 * 2 1 3 35 35 H 1.09000 * 109.47379 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.46731 * 299.99613 * 5 3 2 37 37 H 1.09006 * 109.47023 * 59.99607 * 5 3 2 38 38 H 1.08001 * 128.07410 * 0.03008 * 7 6 3 39 39 H 0.96997 * 119.99637 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47391 * 60.00238 * 12 11 9 41 41 H 1.09001 * 109.47221 * 299.99676 * 12 11 9 42 42 H 1.09003 * 109.63750 * 54.55227 * 15 13 12 43 43 H 1.09001 * 109.45982 * 294.43657 * 15 13 12 44 44 H 1.09000 * 109.46176 * 178.49108 * 16 15 13 45 45 H 1.09001 * 109.44755 * 58.52030 * 16 15 13 46 46 H 1.09006 * 109.49691 * 301.40966 * 17 16 15 47 47 H 1.09001 * 109.52321 * 181.33125 * 17 16 15 48 48 H 1.08998 * 109.58336 * 185.58120 * 18 17 16 49 49 H 1.09002 * 109.69938 * 65.21970 * 18 17 16 50 50 H 0.97004 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4444 -0.1238 7 6 4.4759 1.3087 0.9272 8 6 5.6890 1.3775 0.2981 9 6 7.0203 1.2914 0.9276 10 8 7.1155 1.1488 2.1312 11 7 8.1311 1.3710 0.1684 12 6 9.4532 1.2860 0.7937 13 6 10.5346 1.4037 -0.2822 14 1 10.4416 2.3618 -0.7936 15 6 11.9230 1.2942 0.3661 16 6 12.9914 1.2763 -0.7296 17 6 12.7823 0.0553 -1.6283 18 6 11.4065 0.1472 -2.2959 19 7 10.3848 0.3108 -1.2528 20 6 9.3103 -0.5357 -1.1899 21 1 8.8616 -0.7689 -0.2355 22 6 8.8011 -1.0985 -2.3522 23 7 9.1521 -0.6163 -3.5254 24 14 7.6178 -2.5403 -2.2511 25 1 7.3847 -2.8905 -0.8269 26 1 6.3282 -2.1678 -2.8863 27 1 8.1993 -3.7086 -2.9597 28 8 5.4221 1.5329 -1.0124 29 7 4.2317 1.5669 -1.2204 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.9989 3.1541 1.3077 36 1 0.5489 2.1251 1.3970 37 1 2.0699 1.5874 2.1492 38 1 4.2786 1.1821 1.9814 39 1 8.0550 1.4852 -0.7918 40 1 9.5522 0.3289 1.3056 41 1 9.5675 2.0966 1.5134 42 1 11.9838 0.3750 0.9487 43 1 12.0869 2.1507 1.0200 44 1 13.9796 1.2257 -0.2724 45 1 12.9137 2.1846 -1.3271 46 1 12.8350 -0.8523 -1.0269 47 1 13.5574 0.0298 -2.3942 48 1 11.2116 -0.7659 -2.8583 49 1 11.3815 1.0038 -2.9695 50 1 8.7966 -1.0098 -4.3377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024696967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:14 Heat of formation + Delta-G solvation = 27.394635 kcal Electronic energy + Delta-G solvation = -30191.278374 eV Core-core repulsion = 26221.845655 eV Total energy + Delta-G solvation = -3969.432719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.77485 -39.30808 -37.72825 -37.20974 -34.38555 -33.13299 -33.05087 -31.91137 -30.60859 -29.91780 -29.63769 -26.31543 -25.43415 -25.04293 -23.17721 -22.84982 -22.14914 -21.01035 -20.66823 -19.58245 -19.09968 -18.01843 -17.46935 -16.50019 -15.89930 -15.64989 -15.57529 -15.15544 -14.68271 -14.38089 -14.03790 -13.89137 -13.77673 -13.65788 -13.41619 -13.31527 -12.88633 -12.86261 -12.46216 -12.36531 -12.09143 -12.00478 -11.84321 -11.52868 -11.36424 -11.25037 -11.12266 -10.97824 -10.81547 -10.78428 -10.57891 -10.31861 -10.16161 -10.01584 -9.95581 -9.94359 -9.53829 -9.49617 -9.37235 -8.65952 -8.36146 -6.68283 -5.86690 -3.33156 1.09689 2.19519 2.95899 3.31739 3.40481 3.42375 3.43207 3.67864 4.01064 4.41850 4.52791 4.72288 4.91054 4.96456 5.17305 5.17999 5.23999 5.25834 5.30335 5.33039 5.45519 5.46294 5.56280 5.62183 5.65779 5.69311 5.75177 5.77459 5.85004 5.92749 5.99272 6.05318 6.09052 6.11004 6.13414 6.22133 6.33913 6.36542 6.56436 6.68505 6.71202 6.80568 6.88811 6.99177 7.36329 7.63517 7.76507 7.91502 8.33029 8.37984 8.52652 9.13733 9.75275 10.33342 11.19971 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.003479 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.641022 B = 8045.946988 C = 9245.850695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.010 4.010 4 H 0.088 0.912 5 C -0.146 4.146 6 C 0.010 3.990 7 C -0.163 4.163 8 C -0.064 4.064 9 C 0.593 3.407 10 O -0.538 6.538 11 N -0.672 5.672 12 C 0.133 3.867 13 C 0.159 3.841 14 H 0.035 0.965 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.173 3.827 19 N -0.588 5.588 20 C -0.258 4.258 21 H 0.069 0.931 22 C 0.015 3.985 23 N -0.893 5.893 24 Si 0.886 3.114 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.287 1.287 28 O 0.128 5.872 29 N -0.347 5.347 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.178 0.822 39 H 0.423 0.577 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.084 0.916 49 H 0.019 0.981 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 5.427 7.329 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.030 4.030 4 H 0.106 0.894 5 C -0.204 4.204 6 C -0.147 4.147 7 C -0.186 4.186 8 C -0.131 4.131 9 C 0.375 3.625 10 O -0.417 6.417 11 N -0.322 5.322 12 C 0.009 3.991 13 C 0.052 3.948 14 H 0.052 0.948 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.183 4.183 18 C 0.048 3.952 19 N -0.313 5.313 20 C -0.387 4.387 21 H 0.087 0.913 22 C -0.185 4.185 23 N -0.537 5.537 24 Si 0.716 3.284 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.214 1.214 28 O 0.054 5.946 29 N -0.046 5.046 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.195 0.805 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.037 0.963 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.418 5.428 6.696 12.048 hybrid contribution -0.557 -0.992 0.169 1.150 sum -8.975 4.437 6.865 12.139 Atomic orbital electron populations 1.21812 0.95138 1.01902 1.01986 1.21582 0.96129 0.94992 1.02958 1.19555 0.85634 0.97730 1.00043 0.89363 1.21886 1.01730 1.00649 0.96096 1.23543 0.98621 1.03949 0.88623 1.22677 0.89523 1.04559 1.01847 1.24433 0.97576 1.06871 0.84182 1.16540 0.81376 0.78611 0.85937 1.90800 1.85682 1.52046 1.13185 1.46007 1.04844 1.68801 1.12521 1.21425 0.80807 1.01549 0.95293 1.20838 0.91389 0.92452 0.90135 0.94795 1.22007 0.96173 1.00875 0.97573 1.21360 0.97061 0.98864 0.97225 1.22191 1.00255 0.97246 0.98619 1.20757 0.83774 1.01184 0.89504 1.44078 1.23923 1.30749 1.32511 1.19184 1.07078 1.20279 0.92191 0.91323 1.25032 0.98153 0.99639 0.95685 1.69997 1.46173 1.40650 0.96837 0.86463 0.81044 0.83108 0.77797 1.20223 1.21453 1.21382 1.85071 1.19042 1.65744 1.24710 1.73746 0.89520 1.17265 1.24103 0.92499 0.92264 0.92608 0.91586 0.91321 0.92224 0.91397 0.91912 0.80452 0.73808 0.90960 0.91996 0.92007 0.93003 0.93702 0.92847 0.92824 0.93543 0.89787 0.96284 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.12 -1.23 5.38 -26.73 -0.14 -1.37 16 3 C -0.01 -0.11 2.85 -91.77 -0.26 -0.38 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.15 -1.26 8.57 37.16 0.32 -0.94 16 6 C 0.01 0.15 6.20 -82.16 -0.51 -0.36 16 7 C -0.16 -2.47 10.13 -38.95 -0.39 -2.86 16 8 C -0.06 -1.13 7.29 -36.31 -0.26 -1.40 16 9 C 0.59 11.20 7.82 -12.48 -0.10 11.10 16 10 O -0.54 -10.96 16.91 5.30 0.09 -10.87 16 11 N -0.67 -12.73 3.84 -61.36 -0.24 -12.96 16 12 C 0.13 2.39 4.44 -4.04 -0.02 2.37 16 13 C 0.16 2.96 3.03 -67.37 -0.20 2.75 16 14 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 15 C -0.13 -2.03 5.40 -26.39 -0.14 -2.17 16 16 C -0.11 -1.70 5.88 -26.69 -0.16 -1.86 16 17 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 18 C 0.17 3.84 5.26 -3.71 -0.02 3.82 16 19 N -0.59 -13.15 2.97 -164.52 -0.49 -13.63 16 20 C -0.26 -6.35 6.95 -15.06 -0.10 -6.46 16 21 H 0.07 1.74 5.88 -52.48 -0.31 1.43 16 22 C 0.02 0.39 4.96 -17.43 -0.09 0.31 16 23 N -0.89 -24.24 11.24 55.49 0.62 -23.62 16 24 Si 0.89 21.41 29.58 -169.99 -5.03 16.39 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 O 0.13 2.38 11.04 15.57 0.17 2.55 16 29 N -0.35 -6.13 12.04 33.52 0.40 -5.72 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 37 H 0.06 0.52 7.49 -51.93 -0.39 0.14 16 38 H 0.18 2.28 7.66 -52.49 -0.40 1.88 16 39 H 0.42 8.55 7.21 -40.82 -0.29 8.26 16 40 H 0.07 1.41 7.43 -51.93 -0.39 1.02 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.08 2.11 6.20 -51.93 -0.32 1.79 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -28.24 394.28 -8.67 -36.91 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.26 Total: 6.09 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.89 Total: -1.07 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.30 Total: -55.94 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.26 Total: -8.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.24 -8.67 -36.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024696967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.305 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds