Wall clock time and date at job start Tue Mar 31 2020 18:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46717 * 2 1 4 4 H 1.08995 * 109.47913 * 305.00248 * 3 2 1 5 5 C 1.53002 * 109.47153 * 65.00600 * 3 2 1 6 6 C 1.50706 * 109.46905 * 184.99874 * 3 2 1 7 7 C 1.41259 * 126.70980 * 275.27059 * 6 3 2 8 8 C 1.36823 * 103.84746 * 180.13684 * 7 6 3 9 9 C 1.47516 * 126.94094 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00084 * 359.70676 * 9 8 7 11 11 N 1.34777 * 119.99777 * 179.70926 * 9 8 7 12 12 C 1.46494 * 119.99772 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47098 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.70541 * 60.23923 * 13 12 11 15 15 C 1.53618 * 109.66871 * 180.83284 * 13 12 11 16 16 C 1.53041 * 109.24644 * 174.54846 * 15 13 12 17 17 C 1.53038 * 109.53669 * 298.51210 * 16 15 13 18 18 C 1.53196 * 109.31463 * 61.36198 * 17 16 15 19 19 N 1.46923 * 108.77484 * 305.36737 * 18 17 16 20 20 C 1.36935 * 120.62836 * 233.58717 * 19 18 17 21 21 H 1.08004 * 119.99989 * 148.79850 * 20 19 18 22 22 C 1.38809 * 120.00013 * 329.06472 * 20 19 18 23 23 N 1.31616 * 120.00113 * 345.69414 * 22 20 19 24 24 Si 1.86801 * 119.99939 * 165.68955 * 22 20 19 25 25 H 1.48495 * 109.47230 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46891 * 120.00683 * 24 22 20 27 27 H 1.48500 * 109.47160 * 240.00390 * 24 22 20 28 28 O 1.34634 * 106.11392 * 359.66498 * 8 7 6 29 29 N 1.20889 * 111.46556 * 0.22728 * 28 8 7 30 30 H 1.09005 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47042 * 299.99391 * 1 2 3 32 32 H 1.09000 * 109.47182 * 59.99421 * 1 2 3 33 33 H 1.09007 * 109.46668 * 240.00414 * 2 1 3 34 34 H 1.08993 * 109.46939 * 120.00334 * 2 1 3 35 35 H 1.09000 * 109.47379 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.46731 * 299.99613 * 5 3 2 37 37 H 1.09006 * 109.47023 * 59.99607 * 5 3 2 38 38 H 1.08001 * 128.07410 * 0.03008 * 7 6 3 39 39 H 0.96997 * 119.99637 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47391 * 60.00238 * 12 11 9 41 41 H 1.09001 * 109.47221 * 299.99676 * 12 11 9 42 42 H 1.09003 * 109.63750 * 54.55227 * 15 13 12 43 43 H 1.09001 * 109.45982 * 294.43657 * 15 13 12 44 44 H 1.09000 * 109.46176 * 178.49108 * 16 15 13 45 45 H 1.09001 * 109.44755 * 58.52030 * 16 15 13 46 46 H 1.09006 * 109.49691 * 301.40966 * 17 16 15 47 47 H 1.09001 * 109.52321 * 181.33125 * 17 16 15 48 48 H 1.08998 * 109.58336 * 185.58120 * 18 17 16 49 49 H 1.09002 * 109.69938 * 65.21970 * 18 17 16 50 50 H 0.97004 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4444 -0.1238 7 6 4.4759 1.3087 0.9272 8 6 5.6890 1.3775 0.2981 9 6 7.0203 1.2914 0.9276 10 8 7.1155 1.1488 2.1312 11 7 8.1311 1.3710 0.1684 12 6 9.4532 1.2860 0.7937 13 6 10.5346 1.4037 -0.2822 14 1 10.4416 2.3618 -0.7936 15 6 11.9230 1.2942 0.3661 16 6 12.9914 1.2763 -0.7296 17 6 12.7823 0.0553 -1.6283 18 6 11.4065 0.1472 -2.2959 19 7 10.3848 0.3108 -1.2528 20 6 9.3103 -0.5357 -1.1899 21 1 8.8616 -0.7689 -0.2355 22 6 8.8011 -1.0985 -2.3522 23 7 9.1521 -0.6163 -3.5254 24 14 7.6178 -2.5403 -2.2511 25 1 7.3847 -2.8905 -0.8269 26 1 6.3282 -2.1678 -2.8863 27 1 8.1993 -3.7086 -2.9597 28 8 5.4221 1.5329 -1.0124 29 7 4.2317 1.5669 -1.2204 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.9989 3.1541 1.3077 36 1 0.5489 2.1251 1.3970 37 1 2.0699 1.5874 2.1492 38 1 4.2786 1.1821 1.9814 39 1 8.0550 1.4852 -0.7918 40 1 9.5522 0.3289 1.3056 41 1 9.5675 2.0966 1.5134 42 1 11.9838 0.3750 0.9487 43 1 12.0869 2.1507 1.0200 44 1 13.9796 1.2257 -0.2724 45 1 12.9137 2.1846 -1.3271 46 1 12.8350 -0.8523 -1.0269 47 1 13.5574 0.0298 -2.3942 48 1 11.2116 -0.7659 -2.8583 49 1 11.3815 1.0038 -2.9695 50 1 8.7966 -1.0098 -4.3377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024696967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:13 Heat of formation + Delta-G solvation = 12.406407 kcal Electronic energy + Delta-G solvation = -30191.928313 eV Core-core repulsion = 26221.845655 eV Total energy + Delta-G solvation = -3970.082657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.07010 -40.83901 -39.30108 -38.13924 -35.87960 -34.90160 -34.22386 -33.28157 -32.14736 -31.62926 -30.40438 -27.88435 -26.77770 -26.26983 -24.57972 -24.01290 -23.74879 -22.29763 -21.97900 -20.93854 -20.55902 -19.38174 -18.80218 -18.22543 -17.39520 -17.15464 -17.08959 -16.16231 -15.95885 -15.86890 -15.63877 -15.36453 -14.96326 -14.82952 -14.73987 -14.60482 -14.47920 -14.06435 -13.67204 -13.63828 -13.47199 -13.03901 -12.92041 -12.87882 -12.82583 -12.59264 -12.51047 -12.32895 -12.20548 -12.05603 -11.97517 -11.79504 -11.62437 -11.52366 -11.48004 -11.09132 -11.07989 -10.98761 -10.85357 -10.54421 -9.98428 -8.56205 -7.85659 -5.31115 -0.27830 0.98606 1.33648 1.40827 1.44773 1.59237 1.94069 2.27048 2.45800 2.93151 3.30102 3.39818 3.59699 3.86761 3.87350 3.96911 3.99326 4.06453 4.13128 4.24983 4.28721 4.43488 4.45026 4.53514 4.55954 4.58544 4.66298 4.72256 4.74384 4.85667 4.88895 5.01038 5.02391 5.06509 5.09996 5.15151 5.16114 5.25681 5.29738 5.32210 5.35970 5.45949 5.48227 5.50230 5.64779 5.74420 5.86118 6.37922 6.43792 6.92829 7.04726 7.18543 7.88320 8.41040 9.18617 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.003479 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.641022 B = 8045.946988 C = 9245.850695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.012 4.012 4 H 0.090 0.910 5 C -0.142 4.142 6 C 0.024 3.976 7 C -0.147 4.147 8 C -0.087 4.087 9 C 0.596 3.404 10 O -0.554 6.554 11 N -0.677 5.677 12 C 0.136 3.864 13 C 0.156 3.844 14 H 0.035 0.965 15 C -0.120 4.120 16 C -0.103 4.103 17 C -0.135 4.135 18 C 0.177 3.823 19 N -0.601 5.601 20 C -0.234 4.234 21 H 0.064 0.936 22 C -0.028 4.028 23 N -0.920 5.920 24 Si 0.926 3.074 25 H -0.277 1.277 26 H -0.300 1.300 27 H -0.290 1.290 28 O 0.097 5.903 29 N -0.373 5.373 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.204 0.796 39 H 0.415 0.585 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.000 1.000 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 6.356 9.698 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.031 4.031 4 H 0.109 0.891 5 C -0.200 4.200 6 C -0.135 4.135 7 C -0.169 4.169 8 C -0.153 4.153 9 C 0.380 3.620 10 O -0.434 6.434 11 N -0.325 5.325 12 C 0.013 3.987 13 C 0.050 3.950 14 H 0.052 0.948 15 C -0.159 4.159 16 C -0.141 4.141 17 C -0.174 4.174 18 C 0.052 3.948 19 N -0.326 5.326 20 C -0.365 4.365 21 H 0.081 0.919 22 C -0.225 4.225 23 N -0.566 5.566 24 Si 0.757 3.243 25 H -0.202 1.202 26 H -0.228 1.228 27 H -0.217 1.217 28 O 0.029 5.971 29 N -0.077 5.077 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.221 0.779 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.018 0.982 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.770 6.362 9.098 14.148 hybrid contribution -0.482 -1.243 -0.519 1.430 sum -9.252 5.119 8.579 13.617 Atomic orbital electron populations 1.21788 0.92970 1.02579 1.03000 1.21580 0.97990 0.94132 1.01905 1.19803 0.82917 0.98600 1.01771 0.89135 1.21900 1.03360 1.00211 0.94497 1.24226 1.00345 1.01342 0.87562 1.23068 0.88474 1.02404 1.02961 1.24413 0.97826 1.08666 0.84426 1.16621 0.81729 0.77956 0.85722 1.90777 1.86081 1.52925 1.13658 1.46064 1.05482 1.68865 1.12106 1.21477 0.80204 1.01731 0.95333 1.21041 0.93504 0.90932 0.89479 0.94756 1.21954 0.94005 1.02158 0.97818 1.21351 0.98519 0.97480 0.96735 1.22040 0.97754 0.98386 0.99176 1.20578 0.86217 0.98552 0.89473 1.44276 1.23445 1.31772 1.33123 1.19217 1.06540 1.19300 0.91455 0.91859 1.25409 0.99739 1.01437 0.95865 1.70093 1.47743 1.41836 0.96928 0.85832 0.79480 0.81707 0.77302 1.20154 1.22812 1.21666 1.85044 1.19703 1.67113 1.25252 1.73749 0.89464 1.18891 1.25602 0.92058 0.90442 0.92382 0.93989 0.91089 0.92326 0.89008 0.91322 0.77947 0.74722 0.92441 0.89381 0.92467 0.89646 0.90668 0.92515 0.93472 0.91914 0.93401 0.98167 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 71.98 0.70 -1.29 16 2 C -0.12 -2.26 5.38 30.59 0.16 -2.10 16 3 C -0.01 -0.24 2.85 -11.54 -0.03 -0.27 16 4 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.14 -2.03 8.57 71.98 0.62 -1.41 16 6 C 0.02 0.68 6.20 43.56 0.27 0.95 16 7 C -0.15 -4.29 10.13 22.68 0.23 -4.06 16 8 C -0.09 -3.11 7.29 24.39 0.18 -2.93 16 9 C 0.60 22.51 7.82 86.69 0.68 23.19 16 10 O -0.55 -22.15 16.91 -3.96 -0.07 -22.21 16 11 N -0.68 -25.78 3.84 -466.32 -1.79 -27.57 16 12 C 0.14 4.74 4.44 86.38 0.38 5.12 16 13 C 0.16 5.63 3.03 45.12 0.14 5.76 16 14 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 15 C -0.12 -3.50 5.40 30.82 0.17 -3.33 16 16 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 17 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 18 C 0.18 7.97 5.26 86.36 0.45 8.42 16 19 N -0.60 -27.03 2.97 -674.42 -2.00 -29.03 16 20 C -0.23 -11.76 6.95 84.03 0.58 -11.18 16 21 H 0.06 3.24 5.88 -2.91 -0.02 3.23 16 22 C -0.03 -1.48 4.96 84.86 0.42 -1.05 16 23 N -0.92 -51.95 11.24 21.65 0.24 -51.71 16 24 Si 0.93 45.38 29.58 68.60 2.03 47.40 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 27 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 28 O 0.10 3.76 11.04 65.90 0.73 4.48 16 29 N -0.37 -13.42 12.04 -48.85 -0.59 -14.01 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.78 6.56 -2.39 -0.02 0.76 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.90 6.56 -2.39 -0.02 0.89 16 37 H 0.07 0.92 7.49 -2.38 -0.02 0.90 16 38 H 0.20 4.73 7.66 -2.91 -0.02 4.71 16 39 H 0.42 17.28 7.21 -92.71 -0.67 16.61 16 40 H 0.06 2.19 7.43 -2.39 -0.02 2.17 16 41 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.05 2.49 6.20 -2.39 -0.01 2.47 16 49 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -63.06 394.28 4.14 -58.92 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.27 Total: 25.16 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.31 Total: 8.56 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.13 Total: -122.32 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.66 Total: -17.73 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -63.06 4.14 -58.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024696967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.325 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds