Wall clock time and date at job start Tue Mar 31 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 C 1.41264 * 126.70188 * 84.71115 * 6 3 2 8 8 C 1.36822 * 103.84635 * 179.89042 * 7 6 3 9 9 C 1.47510 * 126.94535 * 180.11349 * 8 7 6 10 10 O 1.21580 * 120.00030 * 0.32979 * 9 8 7 11 11 N 1.34785 * 119.99667 * 180.32512 * 9 8 7 12 12 C 1.46505 * 119.99419 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47332 * 274.99857 * 12 11 9 14 14 C 1.52988 * 109.47109 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.47229 * 60.00306 * 14 13 12 16 16 N 1.46498 * 109.47263 * 179.97438 * 15 14 13 17 17 C 1.36944 * 119.99942 * 275.00202 * 16 15 14 18 18 H 1.07995 * 119.99812 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99919 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46864 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46804 * 120.00058 * 21 19 17 24 24 H 1.48496 * 109.47306 * 240.00367 * 21 19 17 25 25 C 1.53001 * 109.46825 * 299.99868 * 15 14 13 26 26 C 1.53001 * 109.47039 * 60.00116 * 25 15 14 27 27 O 1.34648 * 106.10851 * 0.36718 * 8 7 6 28 28 N 1.20885 * 111.47010 * 359.74804 * 27 8 7 29 29 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 30 30 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 31 31 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 33 33 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 34 34 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 36 36 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 37 37 H 1.07996 * 128.07725 * 359.97438 * 7 6 3 38 38 H 0.96992 * 120.00420 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47549 * 35.00332 * 12 11 9 40 40 H 1.08999 * 109.47192 * 300.00694 * 13 12 11 41 41 H 1.09007 * 109.46592 * 60.00270 * 13 12 11 42 42 H 1.08999 * 109.47537 * 300.00332 * 14 13 12 43 43 H 1.09007 * 109.47511 * 180.02562 * 14 13 12 44 44 H 1.08999 * 109.46840 * 59.99599 * 15 14 13 45 45 H 0.97006 * 120.00336 * 94.99670 * 16 15 14 46 46 H 0.97008 * 119.99970 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.47192 * 299.99515 * 25 15 14 48 48 H 1.09004 * 109.47030 * 180.02562 * 25 15 14 49 49 H 1.09005 * 109.46717 * 180.02562 * 26 25 15 50 50 H 1.08993 * 109.46966 * 59.99711 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.4759 1.3080 -0.9271 8 6 5.6890 1.3764 -0.2980 9 6 7.0203 1.2914 -0.9276 10 8 7.1155 1.1510 -2.1315 11 7 8.1311 1.3696 -0.1682 12 6 9.4533 1.2858 -0.7937 13 6 9.8470 -0.1834 -0.9591 14 6 11.2280 -0.2709 -1.6117 15 6 12.2562 0.4360 -0.7262 16 7 13.5787 0.3518 -1.3507 17 6 14.3613 -0.7541 -1.1506 18 1 14.0036 -1.5639 -0.5320 19 6 15.6141 -0.8342 -1.7428 20 7 16.0502 0.1530 -2.4963 21 14 16.6819 -2.3423 -1.4693 22 1 15.9674 -3.3016 -0.5892 23 1 16.9693 -2.9887 -2.7750 24 1 17.9574 -1.9359 -0.8267 25 6 11.8625 1.9052 -0.5607 26 6 10.4814 1.9927 0.0919 27 8 5.4220 1.5312 1.0126 28 7 4.2317 1.5658 1.2206 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.9982 3.1542 -1.3072 35 1 2.0700 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3970 37 1 4.2785 1.1812 -1.9813 38 1 8.0551 1.4813 0.7922 39 1 9.4238 1.7664 -1.7715 40 1 9.8765 -0.6641 0.0187 41 1 9.1142 -0.6871 -1.5897 42 1 11.1990 0.2099 -2.5895 43 1 11.5084 -1.3176 -1.7300 44 1 12.2853 -0.0447 0.2516 45 1 13.9001 1.0793 -1.9061 46 1 16.9259 0.0972 -2.9098 47 1 11.8335 2.3860 -1.5385 48 1 12.5952 2.4090 0.0697 49 1 10.2007 3.0394 0.2093 50 1 10.5105 1.5119 1.0696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026573152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:26 Heat of formation + Delta-G solvation = 5.765686 kcal Electronic energy + Delta-G solvation = -28392.179162 eV Core-core repulsion = 24421.808541 eV Total energy + Delta-G solvation = -3970.370621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.36038 -40.12886 -38.05148 -37.60237 -35.03585 -33.62213 -33.22448 -32.21305 -30.59656 -30.43810 -29.97684 -27.55689 -25.81520 -24.57023 -23.47766 -23.25124 -22.37586 -21.50819 -20.93908 -20.24366 -19.48485 -18.50387 -18.07268 -17.04392 -16.58845 -16.37377 -15.50244 -15.44182 -15.11790 -14.95244 -14.40040 -14.24730 -14.03458 -13.90098 -13.78806 -13.56852 -13.25178 -13.06808 -12.65822 -12.60460 -12.36385 -12.09128 -11.98397 -11.84295 -11.72479 -11.53142 -11.46421 -11.15831 -11.11219 -10.84430 -10.81093 -10.73398 -10.43245 -10.41150 -10.16900 -10.13273 -10.04593 -9.78913 -9.60935 -9.13766 -8.86029 -6.93723 -5.75300 -3.03744 0.49590 1.67551 2.30707 2.75334 2.96327 3.43979 3.49724 3.51828 3.53083 4.04883 4.37298 4.47580 4.54993 4.59791 4.65945 4.73459 4.84503 4.94132 4.98689 5.01197 5.01857 5.16251 5.22971 5.36624 5.44162 5.46990 5.50380 5.51211 5.56079 5.60738 5.63470 5.69209 5.77835 5.78659 5.82808 5.84317 5.98504 6.13068 6.21280 6.26850 6.42493 6.53046 6.59555 6.70090 6.97262 7.13527 7.14151 7.69595 7.72198 7.81935 8.43579 9.54701 10.13214 10.47560 11.47482 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.001768 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.584261 B =15837.382934 C =16088.520335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.019 3.981 7 C -0.149 4.149 8 C -0.080 4.080 9 C 0.603 3.397 10 O -0.509 6.509 11 N -0.708 5.708 12 C 0.144 3.856 13 C -0.125 4.125 14 C -0.132 4.132 15 C 0.176 3.824 16 N -0.725 5.725 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.120 4.120 26 C -0.120 4.120 27 O 0.116 5.884 28 N -0.345 5.345 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.182 0.818 38 H 0.405 0.595 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.664 4.858 6.223 31.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.139 4.139 7 C -0.171 4.171 8 C -0.146 4.146 9 C 0.385 3.615 10 O -0.384 6.384 11 N -0.358 5.358 12 C 0.041 3.959 13 C -0.164 4.164 14 C -0.173 4.173 15 C 0.066 3.934 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.159 4.159 26 C -0.158 4.158 27 O 0.043 5.957 28 N -0.045 5.045 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.199 0.801 38 H 0.240 0.760 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -30.795 4.753 6.690 31.870 hybrid contribution 0.717 -0.696 -0.428 1.087 sum -30.078 4.056 6.262 30.989 Atomic orbital electron populations 1.21817 0.94903 1.02117 1.02160 1.21574 0.96418 0.94667 1.02841 1.19626 0.85234 0.98020 1.00365 0.89167 1.21908 1.02146 1.00675 0.95878 1.23627 0.98918 1.03047 0.88347 1.22811 0.89453 1.02692 1.02175 1.24359 0.97434 1.08445 0.84363 1.16537 0.81124 0.77682 0.86120 1.90900 1.85332 1.49268 1.12925 1.46106 1.05931 1.72430 1.11295 1.21278 0.79289 0.97580 0.97742 1.21920 0.98564 0.94650 1.01301 1.22231 0.92846 1.02294 0.99934 1.20250 0.85986 0.92128 0.95002 1.42434 1.13504 1.21719 1.58901 1.19292 0.96550 0.96321 1.24636 0.91152 1.24735 0.97899 0.98060 1.00350 1.69671 1.19724 1.31900 1.36849 0.86146 0.80565 0.82407 0.77259 1.20591 1.21926 1.21921 1.21756 0.94381 0.98920 1.00865 1.21766 0.95064 0.99971 0.99011 1.84978 1.19493 1.66447 1.24753 1.73726 0.89250 1.17365 1.24137 0.92542 0.92127 0.92332 0.91265 0.91664 0.92135 0.91811 0.91102 0.80066 0.76006 0.88940 0.92033 0.92232 0.92400 0.91665 0.93525 0.78297 0.93609 0.91882 0.91208 0.91641 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.15 0.36 -0.31 16 2 C -0.12 -0.68 5.38 -26.74 -0.14 -0.82 16 3 C -0.01 -0.08 2.85 -91.77 -0.26 -0.35 16 4 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -0.74 8.57 37.16 0.32 -0.42 16 6 C 0.02 0.17 6.20 -82.17 -0.51 -0.34 16 7 C -0.15 -1.39 10.13 -38.95 -0.39 -1.78 16 8 C -0.08 -0.83 7.29 -36.32 -0.26 -1.10 16 9 C 0.60 7.20 7.78 -12.48 -0.10 7.11 16 10 O -0.51 -7.73 16.58 5.30 0.09 -7.65 16 11 N -0.71 -7.39 5.07 -54.85 -0.28 -7.67 16 12 C 0.14 1.78 2.45 -67.93 -0.17 1.62 16 13 C -0.13 -1.76 5.49 -26.74 -0.15 -1.91 16 14 C -0.13 -2.32 5.50 -26.73 -0.15 -2.46 16 15 C 0.18 3.34 2.77 -67.93 -0.19 3.15 16 16 N -0.73 -17.83 5.12 -53.42 -0.27 -18.10 16 17 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 21 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C -0.12 -1.84 5.39 -26.73 -0.14 -1.99 16 26 C -0.12 -1.39 5.39 -26.73 -0.14 -1.54 16 27 O 0.12 1.19 11.04 15.53 0.17 1.37 16 28 N -0.34 -3.67 12.04 33.52 0.40 -3.27 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.22 6.57 -51.92 -0.34 -0.12 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.30 7.49 -51.93 -0.39 -0.09 16 36 H 0.07 0.26 6.56 -51.93 -0.34 -0.08 16 37 H 0.18 1.43 7.66 -52.49 -0.40 1.03 16 38 H 0.41 3.24 8.43 -40.82 -0.34 2.90 16 39 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 44 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 45 H 0.38 10.05 7.80 -40.82 -0.32 9.74 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 404.39 15.07 6.09 6.09 Total: -1.00 -31.84 404.39 -8.68 -40.52 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.41 Total: 7.05 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.18 Total: -8.30 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.58 Total: -56.42 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.26 Total: -6.28 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.84 -8.68 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026573152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.287 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds