Wall clock time and date at job start Tue Mar 31 2020 19:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47622 * 2 1 4 4 N 1.46511 * 109.46788 * 119.99630 * 2 1 3 5 5 C 1.46761 * 124.34745 * 120.00020 * 4 2 1 6 6 C 1.54482 * 105.47063 * 163.00680 * 5 4 2 7 7 H 1.08999 * 110.96950 * 143.56741 * 6 5 4 8 8 C 1.50704 * 110.96528 * 267.29326 * 6 5 4 9 9 O 1.21272 * 120.00028 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99769 * 180.02562 * 8 6 5 11 11 C 1.46358 * 120.77593 * 359.69783 * 10 8 6 12 12 C 1.53887 * 108.15366 * 132.71487 * 11 10 8 13 13 H 1.09005 * 112.57603 * 182.36968 * 12 11 10 14 14 C 1.54547 * 107.83288 * 306.64795 * 12 11 10 15 15 C 1.54277 * 104.84779 * 89.06958 * 14 12 11 16 16 C 1.54961 * 104.80987 * 359.81703 * 15 14 12 17 17 H 1.08997 * 112.26062 * 146.60783 * 16 15 14 18 18 C 1.47159 * 120.71016 * 179.97438 * 10 8 6 19 19 N 1.48305 * 107.21058 * 58.50595 * 12 11 10 20 20 C 1.36942 * 128.07845 * 106.70229 * 19 12 11 21 21 H 1.07995 * 119.99667 * 15.26117 * 20 19 12 22 22 C 1.38813 * 119.99963 * 195.25932 * 20 19 12 23 23 N 1.31613 * 120.00056 * 9.77509 * 22 20 19 24 24 Si 1.86796 * 119.99651 * 189.77887 * 22 20 19 25 25 H 1.48498 * 109.47451 * 269.99908 * 24 22 20 26 26 H 1.48503 * 109.47431 * 30.00091 * 24 22 20 27 27 H 1.48497 * 109.47060 * 149.99793 * 24 22 20 28 28 C 1.54626 * 101.76659 * 25.41458 * 6 5 4 29 29 C 1.34412 * 124.34610 * 300.02132 * 4 2 1 30 30 O 1.21280 * 124.94485 * 0.42660 * 29 4 2 31 31 H 1.08995 * 109.47354 * 300.00790 * 1 2 3 32 32 H 1.09007 * 109.46612 * 60.00441 * 1 2 3 33 33 H 1.08990 * 109.47628 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47354 * 239.99210 * 2 1 3 35 35 H 1.09007 * 109.46767 * 299.99464 * 3 2 1 36 36 H 1.08995 * 109.47401 * 59.99238 * 3 2 1 37 37 H 1.08991 * 109.47311 * 179.97438 * 3 2 1 38 38 H 1.08998 * 110.24493 * 44.00087 * 5 4 2 39 39 H 1.09003 * 110.31476 * 282.04167 * 5 4 2 40 40 H 1.08997 * 109.56334 * 13.11247 * 11 10 8 41 41 H 1.08999 * 109.80671 * 252.45335 * 11 10 8 42 42 H 1.08999 * 110.36966 * 207.91246 * 14 12 11 43 43 H 1.09001 * 110.36126 * 330.12101 * 14 12 11 44 44 H 1.08996 * 110.36720 * 118.85034 * 15 14 12 45 45 H 1.09007 * 110.36684 * 241.05202 * 15 14 12 46 46 H 1.09004 * 109.74980 * 107.60774 * 18 10 8 47 47 H 1.09002 * 109.74924 * 346.88018 * 18 10 8 48 48 H 0.97001 * 119.99706 * 179.97438 * 23 22 20 49 49 H 1.08993 * 110.49076 * 93.87974 * 28 6 5 50 50 H 1.09001 * 110.48488 * 216.52750 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8655 -1.8888 1.1730 6 6 3.4717 -1.9925 2.5901 7 1 3.5559 -3.0332 2.9031 8 6 4.8098 -1.3023 2.6560 9 8 5.2639 -0.7644 1.6685 10 7 5.5017 -1.2829 3.8124 11 6 4.9667 -1.9210 5.0160 12 6 6.0827 -2.7760 5.6418 13 1 5.7480 -3.3193 6.5255 14 6 6.6252 -3.7216 4.5463 15 6 7.7548 -2.9253 3.8607 16 6 7.7885 -1.5659 4.6037 17 1 8.7965 -1.1565 4.6702 18 6 6.8100 -0.6140 3.8943 19 7 7.2171 -1.8680 5.9385 20 6 7.6357 -1.4105 7.1595 21 1 7.2898 -1.8899 8.0633 22 6 8.5046 -0.3305 7.2354 23 7 8.7750 0.3736 6.1569 24 14 9.2899 0.1232 8.8684 25 1 8.4201 1.0908 9.5841 26 1 9.4551 -1.0994 9.6950 27 1 10.6190 0.7389 8.6243 28 6 2.4195 -1.2420 3.4389 29 6 1.7475 -0.3084 2.4562 30 8 1.0634 0.6456 2.7609 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0275 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 3.1300 1.4424 0.0005 38 1 3.6565 -1.7770 0.4314 39 1 2.2657 -2.7721 0.9537 40 1 4.1225 -2.5561 4.7479 41 1 4.6446 -1.1591 5.7258 42 1 7.0214 -4.6330 4.9939 43 1 5.8397 -3.9621 3.8299 44 1 8.7064 -3.4452 3.9711 45 1 7.5262 -2.7744 2.8056 46 1 6.7162 0.3099 4.4651 47 1 7.1738 -0.3924 2.8909 48 1 9.3819 1.1284 6.2100 49 1 1.6957 -1.9422 3.8558 50 1 2.9044 -0.6748 4.2334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029328031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:10 Heat of formation + Delta-G solvation = -28.656823 kcal Electronic energy + Delta-G solvation = -31437.739466 eV Core-core repulsion = 27465.876173 eV Total energy + Delta-G solvation = -3971.863293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.07989 -39.72454 -37.89504 -36.24327 -34.99668 -33.85892 -32.42695 -30.95195 -29.99544 -29.28937 -27.75877 -27.26062 -26.34410 -24.20777 -23.89764 -22.60871 -22.43924 -19.85482 -19.57634 -18.95241 -18.58582 -17.58891 -16.75919 -16.34015 -15.81475 -15.58760 -15.16912 -14.85795 -14.62759 -14.18930 -14.10572 -13.75810 -13.66766 -13.56044 -13.21816 -13.09622 -12.90657 -12.76575 -12.56807 -12.18728 -12.02613 -11.92130 -11.80347 -11.60685 -11.60099 -11.55703 -11.34807 -11.17900 -11.03643 -10.91653 -10.83028 -10.39655 -10.07698 -9.92826 -9.74134 -9.60926 -9.57800 -9.31687 -8.83439 -8.72633 -8.11938 -6.89362 -5.88421 -3.23998 2.60531 2.90796 2.95968 3.33375 3.39549 3.41132 3.45911 4.22529 4.31387 4.37682 4.60931 4.76705 4.86355 4.95517 5.04604 5.10650 5.26843 5.28281 5.33359 5.45246 5.51435 5.53359 5.56891 5.59381 5.67789 5.68099 5.70396 5.75683 5.76108 5.82926 5.89332 6.06869 6.15154 6.23790 6.26787 6.33174 6.47075 6.57960 6.60328 6.63786 6.74324 6.81322 6.92360 7.12584 7.24507 7.45298 7.65074 8.00540 8.09278 8.20140 8.58359 9.00940 9.63568 10.39147 11.24448 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003317 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.683653 B = 8438.853646 C = 8799.666390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.168 4.168 4 N -0.610 5.610 5 C 0.118 3.882 6 C -0.124 4.124 7 H 0.120 0.880 8 C 0.513 3.487 9 O -0.551 6.551 10 N -0.585 5.585 11 C 0.091 3.909 12 C 0.133 3.867 13 H 0.079 0.921 14 C -0.122 4.122 15 C -0.137 4.137 16 C 0.169 3.831 17 H 0.118 0.882 18 C 0.112 3.888 19 N -0.584 5.584 20 C -0.229 4.229 21 H 0.077 0.923 22 C -0.002 4.002 23 N -0.912 5.912 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.281 1.281 27 H -0.290 1.290 28 C -0.148 4.148 29 C 0.522 3.478 30 O -0.531 6.531 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.256 0.744 49 H 0.113 0.887 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -7.846 -10.348 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.226 4.226 4 N -0.344 5.344 5 C -0.005 4.005 6 C -0.146 4.146 7 H 0.138 0.862 8 C 0.299 3.701 9 O -0.430 6.430 10 N -0.315 5.315 11 C -0.034 4.034 12 C 0.024 3.976 13 H 0.097 0.903 14 C -0.161 4.161 15 C -0.176 4.176 16 C 0.061 3.939 17 H 0.136 0.864 18 C -0.011 4.011 19 N -0.305 5.305 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.557 5.557 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.207 1.207 27 H -0.216 1.216 28 C -0.189 4.189 29 C 0.310 3.690 30 O -0.408 6.408 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.131 0.869 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.407 -6.820 -10.609 17.692 hybrid contribution 0.427 0.219 0.893 1.014 sum -11.979 -6.601 -9.717 16.778 Atomic orbital electron populations 1.22182 0.94894 1.02109 1.03223 1.20893 0.94031 0.93335 0.86429 1.22174 1.02012 0.95594 1.02861 1.48344 1.51062 1.28951 1.06070 1.21994 0.94053 0.87273 0.97222 1.22292 0.93690 1.01967 0.96632 0.86205 1.20039 0.85751 0.80902 0.83390 1.90648 1.70178 1.46967 1.35200 1.47966 1.20737 1.53723 1.09113 1.22483 0.96934 0.97016 0.87001 1.21971 0.89024 0.91359 0.95260 0.90273 1.22474 0.97892 0.98123 0.97655 1.22703 0.97624 0.98826 0.98425 1.21963 0.98230 0.90324 0.83378 0.86397 1.22445 0.81147 0.97072 1.00434 1.45187 1.29418 1.53443 1.02421 1.18975 1.24034 1.09690 0.83031 0.90560 1.24841 1.01337 0.96319 0.97417 1.69833 1.38775 1.20050 1.27089 0.86140 0.78711 0.78130 0.82828 1.21534 1.20666 1.21604 1.22439 0.98342 0.99492 0.98586 1.20728 0.79940 0.84612 0.83762 1.90682 1.39818 1.28780 1.81528 0.91012 0.91607 0.92651 0.89543 0.91764 0.91178 0.91922 0.88632 0.90638 0.91553 0.91510 0.92636 0.93105 0.92824 0.92913 0.90224 0.91301 0.93428 0.86931 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.20 37.16 0.34 -1.29 16 2 C 0.16 1.70 3.47 -67.93 -0.24 1.47 16 3 C -0.17 -2.06 9.20 37.16 0.34 -1.72 16 4 N -0.61 -7.53 2.83 -164.84 -0.47 -8.00 16 5 C 0.12 1.24 6.63 -3.12 -0.02 1.22 16 6 C -0.12 -1.42 2.52 -90.14 -0.23 -1.65 16 7 H 0.12 1.03 7.44 -51.93 -0.39 0.65 16 8 C 0.51 8.38 7.02 -10.98 -0.08 8.31 16 9 O -0.55 -10.76 15.00 5.56 0.08 -10.68 16 10 N -0.58 -10.28 2.22 -172.20 -0.38 -10.67 16 11 C 0.09 1.44 4.49 -3.66 -0.02 1.42 16 12 C 0.13 2.35 4.32 -65.66 -0.28 2.06 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 14 C -0.12 -1.94 6.18 -25.25 -0.16 -2.10 16 15 C -0.14 -2.49 6.21 -25.03 -0.16 -2.64 16 16 C 0.17 3.67 3.14 -65.46 -0.21 3.46 16 17 H 0.12 2.96 6.37 -51.93 -0.33 2.63 16 18 C 0.11 2.37 5.82 -3.24 -0.02 2.35 16 19 N -0.58 -13.19 2.81 -152.37 -0.43 -13.62 16 20 C -0.23 -5.81 10.37 -15.06 -0.16 -5.97 16 21 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 22 C 0.00 -0.04 5.41 -17.43 -0.09 -0.14 16 23 N -0.91 -24.67 10.43 55.49 0.58 -24.10 16 24 Si 0.91 20.93 29.56 -169.99 -5.03 15.90 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 28 C -0.15 -1.74 5.47 -26.74 -0.15 -1.89 16 29 C 0.52 7.56 7.41 -10.86 -0.08 7.48 16 30 O -0.53 -9.40 15.12 5.56 0.08 -9.32 16 31 H 0.07 0.88 6.77 -51.93 -0.35 0.53 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.07 1.03 6.80 -51.93 -0.35 0.67 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.13 7.02 -51.93 -0.36 0.76 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.78 5.49 -51.93 -0.29 0.50 16 41 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.70 7.84 -51.93 -0.41 0.29 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.94 7.85 -51.93 -0.41 0.53 16 46 H 0.08 1.96 7.82 -51.93 -0.41 1.56 16 47 H 0.07 1.49 7.11 -51.93 -0.37 1.12 16 48 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 49 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.11 1.47 6.73 -51.93 -0.35 1.12 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -30.96 379.00 -9.24 -40.20 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.20 Total: 4.19 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -1.19 Total: 10.38 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.70 Total: -56.38 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.17 Total: -20.00 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.96 -9.24 -40.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029328031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.539 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds