Wall clock time and date at job start Tue Mar 31 2020 19:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47622 * 2 1 4 4 N 1.46511 * 109.46788 * 119.99630 * 2 1 3 5 5 C 1.46761 * 124.34745 * 120.00020 * 4 2 1 6 6 C 1.54482 * 105.47063 * 163.00680 * 5 4 2 7 7 H 1.08999 * 110.96950 * 143.56741 * 6 5 4 8 8 C 1.50704 * 110.96528 * 267.29326 * 6 5 4 9 9 O 1.21272 * 120.00028 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99769 * 180.02562 * 8 6 5 11 11 C 1.46358 * 120.77593 * 359.69783 * 10 8 6 12 12 C 1.53887 * 108.15366 * 132.71487 * 11 10 8 13 13 H 1.09005 * 112.57603 * 182.36968 * 12 11 10 14 14 C 1.54547 * 107.83288 * 306.64795 * 12 11 10 15 15 C 1.54277 * 104.84779 * 89.06958 * 14 12 11 16 16 C 1.54961 * 104.80987 * 359.81703 * 15 14 12 17 17 H 1.08997 * 112.26062 * 146.60783 * 16 15 14 18 18 C 1.47159 * 120.71016 * 179.97438 * 10 8 6 19 19 N 1.48305 * 107.21058 * 58.50595 * 12 11 10 20 20 C 1.36942 * 128.07845 * 106.70229 * 19 12 11 21 21 H 1.07995 * 119.99667 * 15.26117 * 20 19 12 22 22 C 1.38813 * 119.99963 * 195.25932 * 20 19 12 23 23 N 1.31613 * 120.00056 * 9.77509 * 22 20 19 24 24 Si 1.86796 * 119.99651 * 189.77887 * 22 20 19 25 25 H 1.48498 * 109.47451 * 269.99908 * 24 22 20 26 26 H 1.48503 * 109.47431 * 30.00091 * 24 22 20 27 27 H 1.48497 * 109.47060 * 149.99793 * 24 22 20 28 28 C 1.54626 * 101.76659 * 25.41458 * 6 5 4 29 29 C 1.34412 * 124.34610 * 300.02132 * 4 2 1 30 30 O 1.21280 * 124.94485 * 0.42660 * 29 4 2 31 31 H 1.08995 * 109.47354 * 300.00790 * 1 2 3 32 32 H 1.09007 * 109.46612 * 60.00441 * 1 2 3 33 33 H 1.08990 * 109.47628 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47354 * 239.99210 * 2 1 3 35 35 H 1.09007 * 109.46767 * 299.99464 * 3 2 1 36 36 H 1.08995 * 109.47401 * 59.99238 * 3 2 1 37 37 H 1.08991 * 109.47311 * 179.97438 * 3 2 1 38 38 H 1.08998 * 110.24493 * 44.00087 * 5 4 2 39 39 H 1.09003 * 110.31476 * 282.04167 * 5 4 2 40 40 H 1.08997 * 109.56334 * 13.11247 * 11 10 8 41 41 H 1.08999 * 109.80671 * 252.45335 * 11 10 8 42 42 H 1.08999 * 110.36966 * 207.91246 * 14 12 11 43 43 H 1.09001 * 110.36126 * 330.12101 * 14 12 11 44 44 H 1.08996 * 110.36720 * 118.85034 * 15 14 12 45 45 H 1.09007 * 110.36684 * 241.05202 * 15 14 12 46 46 H 1.09004 * 109.74980 * 107.60774 * 18 10 8 47 47 H 1.09002 * 109.74924 * 346.88018 * 18 10 8 48 48 H 0.97001 * 119.99706 * 179.97438 * 23 22 20 49 49 H 1.08993 * 110.49076 * 93.87974 * 28 6 5 50 50 H 1.09001 * 110.48488 * 216.52750 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8655 -1.8888 1.1730 6 6 3.4717 -1.9925 2.5901 7 1 3.5559 -3.0332 2.9031 8 6 4.8098 -1.3023 2.6560 9 8 5.2639 -0.7644 1.6685 10 7 5.5017 -1.2829 3.8124 11 6 4.9667 -1.9210 5.0160 12 6 6.0827 -2.7760 5.6418 13 1 5.7480 -3.3193 6.5255 14 6 6.6252 -3.7216 4.5463 15 6 7.7548 -2.9253 3.8607 16 6 7.7885 -1.5659 4.6037 17 1 8.7965 -1.1565 4.6702 18 6 6.8100 -0.6140 3.8943 19 7 7.2171 -1.8680 5.9385 20 6 7.6357 -1.4105 7.1595 21 1 7.2898 -1.8899 8.0633 22 6 8.5046 -0.3305 7.2354 23 7 8.7750 0.3736 6.1569 24 14 9.2899 0.1232 8.8684 25 1 8.4201 1.0908 9.5841 26 1 9.4551 -1.0994 9.6950 27 1 10.6190 0.7389 8.6243 28 6 2.4195 -1.2420 3.4389 29 6 1.7475 -0.3084 2.4562 30 8 1.0634 0.6456 2.7609 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0275 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 3.1300 1.4424 0.0005 38 1 3.6565 -1.7770 0.4314 39 1 2.2657 -2.7721 0.9537 40 1 4.1225 -2.5561 4.7479 41 1 4.6446 -1.1591 5.7258 42 1 7.0214 -4.6330 4.9939 43 1 5.8397 -3.9621 3.8299 44 1 8.7064 -3.4452 3.9711 45 1 7.5262 -2.7744 2.8056 46 1 6.7162 0.3099 4.4651 47 1 7.1738 -0.3924 2.8909 48 1 9.3819 1.1284 6.2100 49 1 1.6957 -1.9422 3.8558 50 1 2.9044 -0.6748 4.2334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029328031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:08 Heat of formation + Delta-G solvation = -47.563117 kcal Electronic energy + Delta-G solvation = -31438.559304 eV Core-core repulsion = 27465.876173 eV Total energy + Delta-G solvation = -3972.683131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.21252 -41.03107 -39.29596 -37.33939 -36.01179 -35.38519 -34.14677 -32.37692 -31.20272 -30.88442 -28.72494 -28.14444 -27.83724 -25.74940 -25.44582 -23.81320 -23.39243 -21.22871 -21.12474 -20.11795 -19.91704 -18.87303 -17.95470 -17.63392 -17.15997 -16.84456 -16.59807 -16.30343 -15.93659 -15.61871 -15.21337 -15.12088 -14.68139 -14.66349 -14.53779 -14.48209 -14.42109 -13.79007 -13.57900 -13.53959 -13.26515 -13.22482 -13.08259 -12.88303 -12.80480 -12.73435 -12.64256 -12.55443 -12.44875 -12.22744 -12.07557 -11.97549 -11.76756 -11.47487 -11.39977 -11.08256 -10.83296 -10.64739 -10.56729 -9.70598 -9.66698 -8.68249 -7.84838 -5.19323 1.47863 1.49288 1.55532 1.57209 1.66247 2.04740 2.14295 2.51584 3.29190 3.35358 3.38623 3.49256 3.57327 3.85566 3.97738 4.09780 4.12845 4.17843 4.26873 4.30828 4.33783 4.36117 4.47677 4.59735 4.62421 4.64896 4.69681 4.72869 4.76312 4.84192 4.86789 4.90199 4.91562 4.92543 5.02790 5.13025 5.14861 5.19046 5.20879 5.29777 5.33272 5.46672 5.56672 5.61260 5.70495 5.86464 6.18326 6.24758 6.66172 7.07142 7.17734 7.24936 7.75527 8.53554 9.26696 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003317 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.683653 B = 8438.853646 C = 8799.666390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 C -0.164 4.164 4 N -0.610 5.610 5 C 0.117 3.883 6 C -0.112 4.112 7 H 0.171 0.829 8 C 0.508 3.492 9 O -0.588 6.588 10 N -0.588 5.588 11 C 0.097 3.903 12 C 0.125 3.875 13 H 0.097 0.903 14 C -0.109 4.109 15 C -0.127 4.127 16 C 0.165 3.835 17 H 0.073 0.927 18 C 0.130 3.870 19 N -0.607 5.607 20 C -0.227 4.227 21 H 0.083 0.917 22 C -0.060 4.060 23 N -0.940 5.940 24 Si 0.968 3.032 25 H -0.292 1.292 26 H -0.269 1.269 27 H -0.301 1.301 28 C -0.142 4.142 29 C 0.505 3.495 30 O -0.577 6.577 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.030 0.970 47 H 0.054 0.946 48 H 0.244 0.756 49 H 0.157 0.843 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 -11.933 -11.152 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.343 5.343 5 C -0.005 4.005 6 C -0.133 4.133 7 H 0.188 0.812 8 C 0.297 3.703 9 O -0.469 6.469 10 N -0.319 5.319 11 C -0.028 4.028 12 C 0.018 3.982 13 H 0.115 0.885 14 C -0.148 4.148 15 C -0.166 4.166 16 C 0.057 3.943 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.328 5.328 20 C -0.356 4.356 21 H 0.101 0.899 22 C -0.254 4.254 23 N -0.588 5.588 24 Si 0.798 3.202 25 H -0.220 1.220 26 H -0.194 1.194 27 H -0.228 1.228 28 C -0.182 4.182 29 C 0.294 3.706 30 O -0.458 6.458 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.175 0.825 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.039 -10.976 -11.428 21.846 hybrid contribution 1.228 1.537 1.065 2.237 sum -13.811 -9.439 -10.363 19.679 Atomic orbital electron populations 1.22089 0.93756 1.02918 1.02649 1.21112 0.94958 0.92343 0.87047 1.22131 1.00347 0.97206 1.02523 1.48550 1.50512 1.29426 1.05844 1.22244 0.94149 0.88033 0.96075 1.22407 0.89696 1.03544 0.97644 0.81169 1.21025 0.87124 0.80155 0.82005 1.90641 1.71453 1.48347 1.36473 1.47951 1.19513 1.53837 1.10549 1.22514 0.97760 0.96676 0.85800 1.22313 0.88011 0.91044 0.96844 0.88527 1.22428 0.97647 0.97365 0.97365 1.22563 0.98997 0.96743 0.98326 1.21761 0.96094 0.92251 0.84146 0.90923 1.21846 0.83688 0.95566 0.98427 1.45388 1.31672 1.54071 1.01696 1.19317 1.22913 1.08876 0.84528 0.89894 1.25533 1.02838 0.97134 0.99865 1.70047 1.39619 1.20456 1.28638 0.85236 0.77115 0.77868 0.79968 1.21953 1.19366 1.22801 1.22491 0.98859 0.99537 0.97340 1.21316 0.79736 0.84527 0.85057 1.90659 1.42016 1.30747 1.82364 0.94029 0.89713 0.91066 0.86826 0.89288 0.94339 0.94253 0.89883 0.85702 0.85871 0.93804 0.91261 0.89407 0.93055 0.92479 0.95130 0.92804 0.94659 0.82512 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.20 71.98 0.66 -2.06 16 2 C 0.15 2.93 3.47 44.99 0.16 3.09 16 3 C -0.16 -4.04 9.20 71.98 0.66 -3.38 16 4 N -0.61 -13.56 2.83 -794.03 -2.25 -15.81 16 5 C 0.12 1.92 6.63 86.83 0.58 2.49 16 6 C -0.11 -2.01 2.52 -10.48 -0.03 -2.04 16 7 H 0.17 1.47 7.44 -2.39 -0.02 1.45 16 8 C 0.51 15.57 7.02 87.66 0.62 16.19 16 9 O -0.59 -22.80 15.00 -3.01 -0.05 -22.85 16 10 N -0.59 -20.06 2.22 -817.11 -1.82 -21.88 16 11 C 0.10 2.78 4.49 86.71 0.39 3.16 16 12 C 0.12 4.05 4.32 45.47 0.20 4.24 16 13 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 14 C -0.11 -3.00 6.18 31.55 0.20 -2.81 16 15 C -0.13 -4.46 6.21 31.70 0.20 -4.26 16 16 C 0.17 7.43 3.14 45.60 0.14 7.57 16 17 H 0.07 3.91 6.37 -2.39 -0.02 3.90 16 18 C 0.13 5.77 5.82 86.54 0.50 6.27 16 19 N -0.61 -27.47 2.81 -635.99 -1.79 -29.26 16 20 C -0.23 -11.65 10.37 84.03 0.87 -10.78 16 21 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 22 C -0.06 -3.22 5.41 84.86 0.46 -2.77 16 23 N -0.94 -54.13 10.43 21.65 0.23 -53.90 16 24 Si 0.97 44.41 29.56 68.60 2.03 46.44 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 C -0.14 -2.82 5.47 30.59 0.17 -2.65 16 29 C 0.50 13.86 7.41 87.90 0.65 14.51 16 30 O -0.58 -20.74 15.12 -3.03 -0.05 -20.78 16 31 H 0.04 0.99 6.77 -2.39 -0.02 0.98 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.04 1.18 6.80 -2.39 -0.02 1.16 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.66 7.02 -2.39 -0.02 1.64 16 39 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 2.14 5.49 -2.39 -0.01 2.13 16 41 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.81 7.84 -2.39 -0.02 1.79 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.94 7.85 -2.38 -0.02 1.92 16 46 H 0.03 1.63 7.82 -2.39 -0.02 1.61 16 47 H 0.05 2.49 7.11 -2.39 -0.02 2.47 16 48 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.09 2.19 6.73 -2.39 -0.02 2.17 16 Total: -1.00 -76.58 379.00 3.66 -72.92 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.93 Total: 18.32 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 6.42 Total: 26.79 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -5.62 Total: -120.84 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.09 Total: -43.63 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -76.58 3.66 -72.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029328031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.362 kcal (2) G-P(sol) polarization free energy of solvation -76.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds