Wall clock time and date at job start Tue Mar 31 2020 19:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 N 1.46495 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.46764 * 124.35169 * 90.00066 * 4 3 2 6 6 C 1.54479 * 105.54837 * 196.94978 * 5 4 3 7 7 H 1.08999 * 110.97014 * 92.75109 * 6 5 4 8 8 C 1.50697 * 110.96837 * 216.50911 * 6 5 4 9 9 O 1.21283 * 120.00138 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00166 * 180.02562 * 8 6 5 11 11 C 1.47164 * 120.71035 * 179.97438 * 10 8 6 12 12 C 1.53890 * 108.03059 * 132.75837 * 11 10 8 13 13 H 1.08995 * 112.09680 * 181.91239 * 12 11 10 14 14 C 1.54548 * 107.82875 * 306.50333 * 12 11 10 15 15 C 1.54286 * 104.85037 * 89.07511 * 14 12 11 16 16 C 1.54550 * 104.84699 * 359.97438 * 15 14 12 17 17 H 1.09000 * 112.17916 * 146.41273 * 16 15 14 18 18 C 1.47162 * 120.71010 * 359.72100 * 10 8 6 19 19 N 1.48310 * 104.35537 * 24.70822 * 16 15 14 20 20 C 1.36932 * 128.07832 * 139.08276 * 19 16 15 21 21 H 1.07999 * 120.00204 * 194.95503 * 20 19 16 22 22 C 1.38812 * 120.00178 * 14.95418 * 20 19 16 23 23 N 1.31621 * 119.99831 * 9.27304 * 22 20 19 24 24 Si 1.86793 * 120.00354 * 189.27576 * 22 20 19 25 25 H 1.48501 * 109.47229 * 60.00014 * 24 22 20 26 26 H 1.48499 * 109.47391 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47274 * 300.00216 * 24 22 20 28 28 C 1.54765 * 101.70520 * 334.68117 * 6 5 4 29 29 C 1.34419 * 124.34734 * 269.97533 * 4 3 2 30 30 O 1.21283 * 124.94391 * 359.58984 * 29 4 3 31 31 H 1.08997 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47159 * 300.00023 * 1 2 3 33 33 H 1.09007 * 109.47021 * 59.99885 * 1 2 3 34 34 H 1.09001 * 109.46758 * 239.99986 * 2 1 3 35 35 H 1.08997 * 109.47132 * 120.00035 * 2 1 3 36 36 H 1.09001 * 109.46785 * 59.99771 * 3 2 1 37 37 H 1.08997 * 109.47143 * 300.00028 * 3 2 1 38 38 H 1.08999 * 110.24487 * 315.99544 * 5 4 3 39 39 H 1.09001 * 110.24412 * 77.90812 * 5 4 3 40 40 H 1.09001 * 109.75162 * 252.38711 * 11 10 8 41 41 H 1.08999 * 109.75564 * 13.12498 * 11 10 8 42 42 H 1.09001 * 110.36473 * 207.91375 * 14 12 11 43 43 H 1.08998 * 110.36367 * 330.23225 * 14 12 11 44 44 H 1.08998 * 110.36072 * 241.15738 * 15 14 12 45 45 H 1.08992 * 110.45739 * 118.88654 * 15 14 12 46 46 H 1.09002 * 109.74473 * 346.87726 * 18 10 8 47 47 H 1.09000 * 109.74971 * 107.60634 * 18 10 8 48 48 H 0.97003 * 120.00315 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.41653 * 266.03336 * 28 6 5 50 50 H 1.09003 * 110.51753 * 143.41412 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4426 -1.2126 6 6 5.7418 1.0086 -0.7519 7 1 5.8690 -0.0696 -0.8487 8 6 6.8103 1.7465 -1.5166 9 8 6.4996 2.5561 -2.3645 10 7 8.1111 1.5059 -1.2592 11 6 9.1673 2.2170 -1.9970 12 6 10.1975 2.7319 -0.9762 13 1 10.9965 3.3008 -1.4514 14 6 9.4371 3.5502 0.0918 15 6 9.0337 2.5194 1.1667 16 6 9.5865 1.1717 0.6501 17 1 9.9065 0.5196 1.4628 18 6 8.5057 0.5304 -0.2303 19 7 10.7110 1.5520 -0.2390 20 6 11.9373 0.9536 -0.3528 21 1 12.7441 1.4667 -0.8550 22 6 12.1437 -0.3125 0.1775 23 7 11.1231 -1.0127 0.6254 24 14 13.8696 -1.0226 0.2555 25 1 14.7303 -0.1417 1.0851 26 1 13.8203 -2.3784 0.8594 27 1 14.4304 -1.1126 -1.1166 28 6 5.7301 1.4331 0.7364 29 6 4.2639 1.4428 1.1089 30 8 3.8355 1.4502 2.2435 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 3.9378 0.7323 -1.9390 39 1 4.3684 2.4427 -1.6448 40 1 9.6511 1.5352 -2.6964 41 1 8.7353 3.0576 -2.5401 42 1 10.0886 4.3110 0.5216 43 1 8.5503 4.0108 -0.3436 44 1 7.9487 2.4732 1.2596 45 1 9.4855 2.7724 2.1257 46 1 7.6414 0.2693 0.3804 47 1 8.9055 -0.3652 -0.7060 48 1 11.2672 -1.8977 0.9956 49 1 6.1594 2.4284 0.8513 50 1 6.2734 0.7096 1.3443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029495409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:19 Heat of formation + Delta-G solvation = -31.405569 kcal Electronic energy + Delta-G solvation = -31082.433107 eV Core-core repulsion = 27110.450620 eV Total energy + Delta-G solvation = -3971.982487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.00855 -39.72095 -37.95786 -36.36998 -34.95441 -33.83374 -32.54551 -31.76167 -30.45051 -29.32535 -27.79857 -26.86337 -26.00420 -24.21364 -23.77442 -22.54256 -21.97630 -19.91488 -19.78058 -19.32708 -18.56794 -17.53421 -16.97884 -16.36597 -15.87981 -15.71535 -15.34574 -14.87585 -14.72058 -14.53832 -14.22129 -13.93861 -13.79641 -13.69940 -13.20352 -13.16439 -13.01049 -12.73615 -12.66396 -12.36170 -12.13749 -11.90638 -11.72312 -11.67923 -11.55533 -11.48444 -11.28271 -11.07570 -10.96253 -10.91664 -10.82311 -10.41992 -10.12412 -9.95611 -9.89561 -9.67227 -9.62545 -9.40544 -8.84054 -8.79340 -8.16380 -6.92268 -5.91853 -3.26107 2.53171 2.81706 2.90188 3.32329 3.37897 3.38297 3.42766 4.21377 4.33761 4.37759 4.69108 4.70865 4.74279 4.86939 5.00612 5.06103 5.15977 5.20806 5.26748 5.35456 5.39621 5.47717 5.54432 5.61453 5.65764 5.69160 5.73867 5.74514 5.83452 5.85134 5.89409 5.97044 5.99034 6.05025 6.24147 6.34065 6.42993 6.48310 6.54663 6.56756 6.67888 6.82474 6.87343 7.00075 7.18083 7.39101 7.58990 7.94731 8.06657 8.10999 8.50853 8.98996 9.61056 10.37040 11.21544 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.003143 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.174954 B = 8907.068704 C = 9366.045656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.126 3.874 4 N -0.621 5.621 5 C 0.119 3.881 6 C -0.120 4.120 7 H 0.114 0.886 8 C 0.519 3.481 9 O -0.560 6.560 10 N -0.583 5.583 11 C 0.102 3.898 12 C 0.134 3.866 13 H 0.079 0.921 14 C -0.124 4.124 15 C -0.142 4.142 16 C 0.168 3.832 17 H 0.121 0.879 18 C 0.096 3.904 19 N -0.584 5.584 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C -0.146 4.146 29 C 0.521 3.479 30 O -0.532 6.532 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.256 0.744 49 H 0.111 0.889 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 3.136 -2.547 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.355 5.355 5 C -0.005 4.005 6 C -0.142 4.142 7 H 0.133 0.867 8 C 0.305 3.695 9 O -0.441 6.441 10 N -0.314 5.314 11 C -0.023 4.023 12 C 0.025 3.975 13 H 0.097 0.903 14 C -0.163 4.163 15 C -0.181 4.181 16 C 0.060 3.940 17 H 0.138 0.862 18 C -0.028 4.028 19 N -0.304 5.304 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.186 4.186 29 C 0.309 3.691 30 O -0.408 6.408 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.066 0.934 49 H 0.129 0.871 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.289 3.318 -2.332 15.818 hybrid contribution 0.941 -0.645 -0.089 1.145 sum -14.348 2.672 -2.421 14.794 Atomic orbital electron populations 1.21692 0.95037 1.02020 1.01927 1.21925 0.96202 0.97173 1.02802 1.21426 0.77895 0.97067 1.03169 1.48353 1.06173 1.73555 1.07390 1.21977 0.88055 1.03702 0.86719 1.22190 0.94314 1.02464 0.95262 0.86748 1.19917 0.83386 0.82836 0.83327 1.90638 1.81885 1.36531 1.35026 1.48170 1.04439 1.40861 1.37900 1.22402 0.88581 0.96370 0.94900 1.21980 0.93388 0.90174 0.91941 0.90346 1.22473 0.98978 0.97635 0.97219 1.22771 0.99092 0.98136 0.98075 1.21787 0.85918 0.92740 0.93519 0.86156 1.22706 0.98255 0.92013 0.89779 1.45149 1.12565 1.31046 1.41685 1.18966 0.85925 0.97119 1.33341 0.90605 1.24800 0.97587 0.95750 1.01797 1.69790 1.28412 1.11817 1.46206 0.86196 0.83694 0.78054 0.77763 1.21171 1.21594 1.21139 1.22591 0.94970 1.05726 0.95351 1.20857 0.89026 0.74834 0.84346 1.90716 1.78615 1.50469 1.21036 0.92405 0.92496 0.92575 0.91652 0.91460 0.90019 0.90319 0.90080 0.88990 0.91826 0.90640 0.92671 0.92736 0.92859 0.92615 0.91684 0.89729 0.93433 0.87076 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.23 6.26 -26.73 -0.17 -1.40 16 3 C 0.13 1.20 5.93 -4.04 -0.02 1.18 16 4 N -0.62 -7.22 2.93 -172.42 -0.51 -7.73 16 5 C 0.12 1.32 6.71 -3.12 -0.02 1.30 16 6 C -0.12 -1.50 2.54 -90.07 -0.23 -1.73 16 7 H 0.11 1.30 7.93 -51.93 -0.41 0.89 16 8 C 0.52 8.19 6.99 -10.99 -0.08 8.11 16 9 O -0.56 -10.10 14.97 5.56 0.08 -10.02 16 10 N -0.58 -9.97 2.26 -171.80 -0.39 -10.35 16 11 C 0.10 1.84 5.90 -3.22 -0.02 1.82 16 12 C 0.13 2.52 4.32 -65.67 -0.28 2.23 16 13 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 14 C -0.12 -2.11 6.18 -25.25 -0.16 -2.27 16 15 C -0.14 -2.47 6.19 -25.24 -0.16 -2.63 16 16 C 0.17 3.42 3.11 -65.89 -0.21 3.21 16 17 H 0.12 2.82 6.36 -51.93 -0.33 2.49 16 18 C 0.10 1.73 5.45 -3.45 -0.02 1.72 16 19 N -0.58 -13.05 2.81 -152.86 -0.43 -13.48 16 20 C -0.23 -5.65 10.37 -15.06 -0.16 -5.81 16 21 H 0.08 1.87 7.85 -52.49 -0.41 1.46 16 22 C 0.00 -0.06 5.42 -17.43 -0.09 -0.15 16 23 N -0.92 -23.63 10.41 55.49 0.58 -23.06 16 24 Si 0.91 20.57 29.56 -169.99 -5.03 15.54 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 C -0.15 -1.88 4.64 -26.67 -0.12 -2.00 16 29 C 0.52 7.33 8.02 -10.86 -0.09 7.24 16 30 O -0.53 -9.23 17.59 5.55 0.10 -9.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.13 6.96 -51.93 -0.36 0.77 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.31 7.11 -51.93 -0.37 0.94 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.90 7.84 -51.93 -0.41 0.49 16 44 H 0.05 0.83 5.15 -51.93 -0.27 0.57 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 1.00 4.14 -51.93 -0.21 0.79 16 47 H 0.08 1.81 7.82 -51.93 -0.41 1.40 16 48 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 49 H 0.11 1.48 6.22 -51.93 -0.32 1.16 16 50 H 0.12 1.46 6.59 -51.93 -0.34 1.11 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -29.01 379.57 -9.36 -38.37 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.04 Total: 3.98 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -1.45 Total: 10.16 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.75 Total: -54.62 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.18 Total: -19.16 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.01 -9.36 -38.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029495409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.961 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds