Wall clock time and date at job start Tue Mar 31 2020 19:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 N 1.46495 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.46764 * 124.35169 * 90.00066 * 4 3 2 6 6 C 1.54479 * 105.54837 * 196.94978 * 5 4 3 7 7 H 1.08999 * 110.97014 * 92.75109 * 6 5 4 8 8 C 1.50697 * 110.96837 * 216.50911 * 6 5 4 9 9 O 1.21283 * 120.00138 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00166 * 180.02562 * 8 6 5 11 11 C 1.47164 * 120.71035 * 179.97438 * 10 8 6 12 12 C 1.53890 * 108.03059 * 132.75837 * 11 10 8 13 13 H 1.08995 * 112.09680 * 181.91239 * 12 11 10 14 14 C 1.54548 * 107.82875 * 306.50333 * 12 11 10 15 15 C 1.54286 * 104.85037 * 89.07511 * 14 12 11 16 16 C 1.54550 * 104.84699 * 359.97438 * 15 14 12 17 17 H 1.09000 * 112.17916 * 146.41273 * 16 15 14 18 18 C 1.47162 * 120.71010 * 359.72100 * 10 8 6 19 19 N 1.48310 * 104.35537 * 24.70822 * 16 15 14 20 20 C 1.36932 * 128.07832 * 139.08276 * 19 16 15 21 21 H 1.07999 * 120.00204 * 194.95503 * 20 19 16 22 22 C 1.38812 * 120.00178 * 14.95418 * 20 19 16 23 23 N 1.31621 * 119.99831 * 9.27304 * 22 20 19 24 24 Si 1.86793 * 120.00354 * 189.27576 * 22 20 19 25 25 H 1.48501 * 109.47229 * 60.00014 * 24 22 20 26 26 H 1.48499 * 109.47391 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47274 * 300.00216 * 24 22 20 28 28 C 1.54765 * 101.70520 * 334.68117 * 6 5 4 29 29 C 1.34419 * 124.34734 * 269.97533 * 4 3 2 30 30 O 1.21283 * 124.94391 * 359.58984 * 29 4 3 31 31 H 1.08997 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47159 * 300.00023 * 1 2 3 33 33 H 1.09007 * 109.47021 * 59.99885 * 1 2 3 34 34 H 1.09001 * 109.46758 * 239.99986 * 2 1 3 35 35 H 1.08997 * 109.47132 * 120.00035 * 2 1 3 36 36 H 1.09001 * 109.46785 * 59.99771 * 3 2 1 37 37 H 1.08997 * 109.47143 * 300.00028 * 3 2 1 38 38 H 1.08999 * 110.24487 * 315.99544 * 5 4 3 39 39 H 1.09001 * 110.24412 * 77.90812 * 5 4 3 40 40 H 1.09001 * 109.75162 * 252.38711 * 11 10 8 41 41 H 1.08999 * 109.75564 * 13.12498 * 11 10 8 42 42 H 1.09001 * 110.36473 * 207.91375 * 14 12 11 43 43 H 1.08998 * 110.36367 * 330.23225 * 14 12 11 44 44 H 1.08998 * 110.36072 * 241.15738 * 15 14 12 45 45 H 1.08992 * 110.45739 * 118.88654 * 15 14 12 46 46 H 1.09002 * 109.74473 * 346.87726 * 18 10 8 47 47 H 1.09000 * 109.74971 * 107.60634 * 18 10 8 48 48 H 0.97003 * 120.00315 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.41653 * 266.03336 * 28 6 5 50 50 H 1.09003 * 110.51753 * 143.41412 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4426 -1.2126 6 6 5.7418 1.0086 -0.7519 7 1 5.8690 -0.0696 -0.8487 8 6 6.8103 1.7465 -1.5166 9 8 6.4996 2.5561 -2.3645 10 7 8.1111 1.5059 -1.2592 11 6 9.1673 2.2170 -1.9970 12 6 10.1975 2.7319 -0.9762 13 1 10.9965 3.3008 -1.4514 14 6 9.4371 3.5502 0.0918 15 6 9.0337 2.5194 1.1667 16 6 9.5865 1.1717 0.6501 17 1 9.9065 0.5196 1.4628 18 6 8.5057 0.5304 -0.2303 19 7 10.7110 1.5520 -0.2390 20 6 11.9373 0.9536 -0.3528 21 1 12.7441 1.4667 -0.8550 22 6 12.1437 -0.3125 0.1775 23 7 11.1231 -1.0127 0.6254 24 14 13.8696 -1.0226 0.2555 25 1 14.7303 -0.1417 1.0851 26 1 13.8203 -2.3784 0.8594 27 1 14.4304 -1.1126 -1.1166 28 6 5.7301 1.4331 0.7364 29 6 4.2639 1.4428 1.1089 30 8 3.8355 1.4502 2.2435 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 3.9378 0.7323 -1.9390 39 1 4.3684 2.4427 -1.6448 40 1 9.6511 1.5352 -2.6964 41 1 8.7353 3.0576 -2.5401 42 1 10.0886 4.3110 0.5216 43 1 8.5503 4.0108 -0.3436 44 1 7.9487 2.4732 1.2596 45 1 9.4855 2.7724 2.1257 46 1 7.6414 0.2693 0.3804 47 1 8.9055 -0.3652 -0.7060 48 1 11.2672 -1.8977 0.9956 49 1 6.1594 2.4284 0.8513 50 1 6.2734 0.7096 1.3443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029495409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:18 Heat of formation + Delta-G solvation = -46.737838 kcal Electronic energy + Delta-G solvation = -31083.097964 eV Core-core repulsion = 27110.450620 eV Total energy + Delta-G solvation = -3972.647344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.19955 -41.01005 -39.36202 -37.46436 -35.84854 -35.33846 -34.21988 -32.84744 -31.79933 -31.02937 -28.85834 -28.06091 -27.11287 -25.70263 -25.35681 -23.72594 -22.72903 -21.31383 -21.16394 -20.50716 -20.06259 -18.81827 -18.16058 -17.65250 -17.21578 -16.93321 -16.64186 -16.45167 -15.84689 -15.65045 -15.52255 -15.36255 -14.86874 -14.72439 -14.62789 -14.46043 -14.38403 -14.05277 -13.66939 -13.54928 -13.23556 -13.16922 -13.04063 -12.87207 -12.77028 -12.68973 -12.56921 -12.42379 -12.41191 -12.18009 -11.96824 -11.78584 -11.64467 -11.42940 -11.40466 -11.13304 -11.09848 -10.81834 -10.51609 -9.75677 -9.68800 -8.67388 -7.83119 -5.16535 1.44292 1.51270 1.52906 1.58028 1.59857 1.87188 2.14372 2.53293 3.14128 3.32435 3.37002 3.49747 3.62661 3.82007 3.99833 4.03483 4.06651 4.13648 4.18355 4.24172 4.34749 4.37806 4.40425 4.47898 4.53418 4.58870 4.62703 4.69979 4.72086 4.81310 4.84760 4.88604 4.94890 5.03051 5.07713 5.11319 5.16672 5.19413 5.21442 5.34179 5.37088 5.39648 5.57178 5.58196 5.65138 5.85994 6.01379 6.26771 6.58326 7.05794 7.11533 7.17890 7.75694 8.54582 9.28134 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.003143 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.174954 B = 8907.068704 C = 9366.045656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.121 3.879 4 N -0.613 5.613 5 C 0.124 3.876 6 C -0.114 4.114 7 H 0.132 0.868 8 C 0.525 3.475 9 O -0.577 6.577 10 N -0.586 5.586 11 C 0.109 3.891 12 C 0.129 3.871 13 H 0.082 0.918 14 C -0.113 4.113 15 C -0.133 4.133 16 C 0.162 3.838 17 H 0.087 0.913 18 C 0.114 3.886 19 N -0.604 5.604 20 C -0.234 4.234 21 H 0.073 0.927 22 C -0.048 4.048 23 N -0.931 5.931 24 Si 0.966 3.034 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.283 1.283 28 C -0.142 4.142 29 C 0.518 3.482 30 O -0.571 6.571 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.249 0.751 49 H 0.109 0.891 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 3.748 -3.420 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.345 5.345 5 C 0.002 3.998 6 C -0.136 4.136 7 H 0.149 0.851 8 C 0.313 3.687 9 O -0.458 6.458 10 N -0.317 5.317 11 C -0.016 4.016 12 C 0.021 3.979 13 H 0.100 0.900 14 C -0.152 4.152 15 C -0.172 4.172 16 C 0.055 3.945 17 H 0.105 0.895 18 C -0.010 4.010 19 N -0.326 5.326 20 C -0.363 4.363 21 H 0.091 0.909 22 C -0.243 4.243 23 N -0.578 5.578 24 Si 0.796 3.204 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.210 1.210 28 C -0.182 4.182 29 C 0.306 3.694 30 O -0.451 6.451 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.127 0.873 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.931 3.954 -3.244 17.687 hybrid contribution 1.413 -0.781 0.121 1.619 sum -15.518 3.173 -3.123 16.144 Atomic orbital electron populations 1.21673 0.93613 1.02544 1.02525 1.21866 0.97405 0.96244 1.02047 1.21646 0.76546 0.97911 1.03932 1.48445 1.07097 1.72118 1.06862 1.22000 0.87076 1.04087 0.86671 1.22180 0.93995 1.02960 0.94458 0.85060 1.20321 0.83149 0.82321 0.82932 1.90638 1.82023 1.37288 1.35848 1.48128 1.04960 1.40799 1.37790 1.22205 0.88710 0.96249 0.94410 1.22147 0.93879 0.89335 0.92503 0.90037 1.22383 0.99272 0.97253 0.96331 1.22689 1.00193 0.96408 0.97946 1.21727 0.86096 0.93753 0.92908 0.89504 1.22342 0.98544 0.90579 0.89551 1.45318 1.12435 1.31947 1.42864 1.19190 0.87196 0.97260 1.32674 0.90922 1.25387 1.00138 0.96322 1.02457 1.69941 1.29338 1.11550 1.46973 0.85354 0.80698 0.76910 0.77438 1.21172 1.22242 1.20989 1.22534 0.94502 1.05705 0.95475 1.20986 0.89603 0.74527 0.84255 1.90698 1.79243 1.52565 1.22598 0.91954 0.92768 0.91119 0.90830 0.93729 0.91075 0.87734 0.87486 0.89568 0.93739 0.89574 0.91903 0.91524 0.90809 0.92821 0.88913 0.93219 0.94193 0.87273 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.14 -2.09 6.26 30.60 0.19 -1.90 16 3 C 0.12 2.02 5.93 86.38 0.51 2.53 16 4 N -0.61 -12.83 2.93 -817.99 -2.40 -15.23 16 5 C 0.12 2.38 6.71 86.83 0.58 2.96 16 6 C -0.11 -2.55 2.54 -10.44 -0.03 -2.58 16 7 H 0.13 2.58 7.93 -2.39 -0.02 2.56 16 8 C 0.52 15.35 6.99 87.66 0.61 15.97 16 9 O -0.58 -19.34 14.97 -3.04 -0.05 -19.39 16 10 N -0.59 -19.24 2.26 -815.84 -1.85 -21.09 16 11 C 0.11 3.83 5.90 86.55 0.51 4.34 16 12 C 0.13 4.76 4.32 45.47 0.20 4.95 16 13 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 14 C -0.11 -3.66 6.18 31.56 0.20 -3.46 16 15 C -0.13 -4.48 6.19 31.56 0.20 -4.28 16 16 C 0.16 6.61 3.11 45.32 0.14 6.75 16 17 H 0.09 4.16 6.36 -2.39 -0.02 4.15 16 18 C 0.11 4.05 5.45 86.40 0.47 4.52 16 19 N -0.60 -27.16 2.81 -637.54 -1.79 -28.95 16 20 C -0.23 -11.90 10.37 84.03 0.87 -11.03 16 21 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16 22 C -0.05 -2.48 5.42 84.86 0.46 -2.02 16 23 N -0.93 -49.11 10.41 21.65 0.23 -48.89 16 24 Si 0.97 42.89 29.56 68.60 2.03 44.92 16 25 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 C -0.14 -3.36 4.64 30.63 0.14 -3.21 16 29 C 0.52 13.79 8.02 87.90 0.71 14.49 16 30 O -0.57 -19.55 17.59 -3.04 -0.05 -19.61 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.37 7.92 -2.39 -0.02 1.36 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.84 6.96 -2.39 -0.02 1.83 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 2.85 7.11 -2.39 -0.02 2.84 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.00 7.84 -2.39 -0.02 1.99 16 44 H 0.07 2.15 5.15 -2.39 -0.01 2.14 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 2.74 4.14 -2.39 -0.01 2.73 16 47 H 0.05 2.15 7.82 -2.39 -0.02 2.13 16 48 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 49 H 0.11 2.66 6.22 -2.39 -0.01 2.64 16 50 H 0.12 2.76 6.59 -2.39 -0.02 2.74 16 Total: -1.00 -63.05 379.57 3.53 -59.51 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.94 Total: 21.66 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 6.47 Total: 27.06 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -5.81 Total: -114.15 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.10 Total: -39.00 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -63.05 3.53 -59.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029495409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.777 kcal (2) G-P(sol) polarization free energy of solvation -63.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds