Wall clock time and date at job start Tue Mar 31 2020 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 H 1.09002 * 109.47375 * 55.00049 * 3 2 1 5 5 C 1.53000 * 109.47155 * 295.00136 * 3 2 1 6 6 C 1.50703 * 109.47394 * 175.00167 * 3 2 1 7 7 C 1.41255 * 126.70813 * 84.99642 * 6 3 2 8 8 C 1.36819 * 103.85233 * 180.02562 * 7 6 3 9 9 C 1.47511 * 126.94565 * 180.02562 * 8 7 6 10 10 O 1.21578 * 120.00077 * 354.45189 * 9 8 7 11 11 N 1.34777 * 120.00015 * 174.44780 * 9 8 7 12 12 C 1.46506 * 119.99720 * 5.58007 * 11 9 8 13 13 C 1.53005 * 109.47009 * 83.93040 * 12 11 9 14 14 C 1.46499 * 120.00088 * 185.57846 * 11 9 8 15 15 H 1.09008 * 110.88567 * 190.10206 * 14 11 9 16 16 C 1.55155 * 111.00415 * 66.22523 * 14 11 9 17 17 C 1.54329 * 102.93849 * 277.42648 * 16 14 11 18 18 N 1.47017 * 107.27079 * 337.80765 * 17 16 14 19 19 C 1.36936 * 125.64760 * 178.98919 * 18 17 16 20 20 H 1.08002 * 120.00256 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00096 * 359.97315 * 19 18 17 22 22 N 1.31623 * 120.00211 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00147 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47278 * 59.99845 * 23 21 19 25 25 H 1.48506 * 109.46843 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46742 * 299.99736 * 23 21 19 27 27 C 1.47428 * 108.70786 * 358.94233 * 18 17 16 28 28 O 1.34644 * 106.10846 * 0.02562 * 8 7 6 29 29 N 1.20890 * 111.46908 * 359.71100 * 28 8 7 30 30 H 1.09002 * 109.47053 * 299.99640 * 1 2 3 31 31 H 1.08997 * 109.47301 * 60.00254 * 1 2 3 32 32 H 1.09006 * 109.46882 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47568 * 240.00295 * 2 1 3 34 34 H 1.08997 * 109.47301 * 119.99746 * 2 1 3 35 35 H 1.08996 * 109.47398 * 60.00097 * 5 3 2 36 36 H 1.09002 * 109.47340 * 299.99883 * 5 3 2 37 37 H 1.09006 * 109.47212 * 179.97438 * 5 3 2 38 38 H 1.08006 * 128.07402 * 0.02562 * 7 6 3 39 39 H 1.08997 * 109.46801 * 203.92411 * 12 11 9 40 40 H 1.08993 * 109.47141 * 323.92355 * 12 11 9 41 41 H 1.09000 * 109.46773 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.46825 * 299.99355 * 13 12 11 43 43 H 1.08990 * 109.47218 * 59.99655 * 13 12 11 44 44 H 1.08994 * 110.71858 * 35.78955 * 16 14 11 45 45 H 1.09004 * 110.71929 * 159.06626 * 16 14 11 46 46 H 1.08993 * 109.88332 * 97.22743 * 17 16 14 47 47 H 1.08998 * 109.87900 * 218.38900 * 17 16 14 48 48 H 0.96987 * 120.00424 * 179.97438 * 22 21 19 49 49 H 1.09004 * 110.36551 * 265.29029 * 27 18 17 50 50 H 1.08997 * 110.36889 * 142.96486 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3073 6 6 3.5419 1.4444 0.1238 7 6 4.4759 1.3140 -0.9278 8 6 5.6890 1.3767 -0.2981 9 6 7.0202 1.2924 -0.9279 10 8 7.1167 1.0514 -2.1156 11 7 8.1297 1.4826 -0.1866 12 6 8.0209 1.6514 1.2646 13 6 7.9581 0.2773 1.9346 14 6 9.4443 1.5206 -0.8320 15 1 10.2423 1.5024 -0.0897 16 6 9.5739 2.7590 -1.7576 17 6 8.8850 2.2925 -3.0574 18 7 8.9093 0.8226 -3.0610 19 6 8.3794 0.0180 -4.0342 20 1 8.4494 -1.0560 -3.9443 21 6 7.7522 0.5827 -5.1362 22 7 7.6673 1.8916 -5.2461 23 14 7.0287 -0.5148 -6.4634 24 1 5.9879 -1.3909 -5.8683 25 1 6.4201 0.3271 -7.5246 26 1 8.1035 -1.3530 -7.0528 27 6 9.5997 0.3581 -1.8440 28 8 5.4220 1.5309 1.0125 29 7 4.2317 1.5707 1.2199 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5489 2.1253 -1.3969 36 1 2.0698 1.5876 -2.1492 37 1 1.9981 3.1544 -1.3071 38 1 4.2785 1.1930 -1.9828 39 1 8.8902 2.1959 1.6332 40 1 7.1155 2.2114 1.4984 41 1 7.8767 0.4029 3.0143 42 1 7.0888 -0.2672 1.5660 43 1 8.8635 -0.2826 1.7007 44 1 9.0524 3.6157 -1.3308 45 1 10.6221 2.9959 -1.9403 46 1 7.8542 2.6463 -3.0782 47 1 9.4276 2.6744 -3.9222 48 1 7.2294 2.2862 -6.0163 49 1 10.6538 0.1749 -2.0524 50 1 9.1254 -0.5451 -1.4601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033980953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:08 Heat of formation + Delta-G solvation = 96.257178 kcal Electronic energy + Delta-G solvation = -31436.813920 eV Core-core repulsion = 27470.367305 eV Total energy + Delta-G solvation = -3966.446615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.72075 -39.81161 -37.16359 -36.23243 -35.38684 -33.03287 -32.29522 -31.32481 -30.00147 -29.55940 -28.80379 -27.19685 -25.37785 -24.63530 -23.74037 -22.99442 -22.50396 -21.13942 -20.19763 -19.84732 -18.57081 -17.53571 -17.07788 -16.46974 -16.21074 -15.66831 -15.14702 -14.96341 -14.51306 -14.41884 -13.94056 -13.90276 -13.67036 -13.53223 -13.28263 -13.15370 -12.75931 -12.31205 -12.26223 -11.95436 -11.94248 -11.87858 -11.71788 -11.61136 -11.41464 -11.31508 -11.05931 -10.97516 -10.75974 -10.73718 -10.70889 -10.67435 -10.05032 -10.00055 -9.82739 -9.74124 -9.43321 -9.28603 -8.95077 -8.43523 -7.91657 -6.29755 -5.42839 -2.68145 1.27091 2.29101 3.00913 3.52390 3.52932 3.57237 3.57863 3.74395 4.06618 4.52582 4.71232 4.77431 4.87565 5.00952 5.08176 5.19730 5.30137 5.30802 5.34207 5.41255 5.46271 5.49307 5.56528 5.61606 5.66203 5.69343 5.75397 5.82313 5.84541 5.88061 5.89243 5.90450 6.01644 6.03171 6.16503 6.21245 6.23802 6.25947 6.33647 6.51356 6.59651 6.63268 6.74920 7.22906 7.75352 7.83739 7.86146 8.07659 8.33552 8.52836 8.90030 9.49206 10.11124 10.77002 11.70311 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004990 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.845976 B = 5610.340448 C = 7749.530725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.010 4.010 4 H 0.085 0.915 5 C -0.148 4.148 6 C 0.018 3.982 7 C -0.163 4.163 8 C -0.061 4.061 9 C 0.542 3.458 10 O -0.368 6.368 11 N -0.602 5.602 12 C 0.104 3.896 13 C -0.165 4.165 14 C 0.134 3.866 15 H 0.087 0.913 16 C -0.162 4.162 17 C 0.188 3.812 18 N -0.568 5.568 19 C -0.192 4.192 20 H 0.067 0.933 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.899 3.101 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.129 3.871 28 O 0.105 5.895 29 N -0.366 5.366 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.178 0.822 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.033 0.967 48 H 0.245 0.755 49 H 0.025 0.975 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 0.829 15.179 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.029 4.029 4 H 0.104 0.896 5 C -0.206 4.206 6 C -0.140 4.140 7 C -0.185 4.185 8 C -0.127 4.127 9 C 0.322 3.678 10 O -0.230 6.230 11 N -0.340 5.340 12 C -0.019 4.019 13 C -0.223 4.223 14 C 0.030 3.970 15 H 0.105 0.895 16 C -0.201 4.201 17 C 0.064 3.936 18 N -0.293 5.293 19 C -0.320 4.320 20 H 0.085 0.915 21 C -0.201 4.201 22 N -0.572 5.572 23 Si 0.731 3.269 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.217 1.217 27 C 0.001 3.999 28 O 0.037 5.963 29 N -0.070 5.070 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.196 0.804 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.043 0.957 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.884 0.872 15.506 16.988 hybrid contribution -0.502 -0.639 -1.302 1.535 sum -7.386 0.233 14.204 16.011 Atomic orbital electron populations 1.21813 0.95212 1.01838 1.02009 1.21561 0.96074 0.95048 1.02781 1.19541 0.85809 0.97594 0.99938 0.89639 1.21902 1.01645 1.00811 0.96245 1.23490 0.98459 1.03333 0.88743 1.22768 0.89667 1.04076 1.02029 1.25202 0.98586 1.05725 0.83171 1.17320 0.80945 0.82003 0.87541 1.91777 1.81894 1.38875 1.10484 1.47672 1.05896 1.73942 1.06472 1.21641 1.02784 0.97360 0.80163 1.22174 1.02255 0.97671 1.00207 1.22347 0.82457 0.97895 0.94282 0.89499 1.23420 1.00829 0.96591 0.99276 1.21121 0.98293 0.83879 0.90317 1.44149 1.64167 1.01551 1.19466 1.18746 1.28288 0.88584 0.96422 0.91527 1.24551 1.01610 0.95517 0.98439 1.69927 1.49357 1.08044 1.29842 0.86392 0.79071 0.79442 0.82014 1.21748 1.21979 1.21713 1.21790 0.95630 0.94395 0.88042 1.85101 1.18694 1.66799 1.25750 1.73614 0.90180 1.18649 1.24557 0.92726 0.92159 0.92548 0.91223 0.91857 0.91483 0.91641 0.92212 0.80442 0.90404 0.90108 0.91906 0.92782 0.92398 0.92296 0.91698 0.92728 0.94914 0.94451 0.95741 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.12 -1.22 5.38 -26.73 -0.14 -1.36 16 3 C -0.01 -0.11 2.85 -91.77 -0.26 -0.37 16 4 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.15 -1.56 8.56 37.16 0.32 -1.25 16 6 C 0.02 0.26 6.20 -82.17 -0.51 -0.25 16 7 C -0.16 -2.73 10.13 -38.95 -0.39 -3.12 16 8 C -0.06 -1.06 6.76 -36.32 -0.25 -1.30 16 9 C 0.54 10.57 7.07 -12.48 -0.09 10.48 16 10 O -0.37 -8.90 8.91 5.30 0.05 -8.85 16 11 N -0.60 -9.85 2.57 -164.90 -0.42 -10.27 16 12 C 0.10 1.29 5.70 -4.04 -0.02 1.27 16 13 C -0.16 -1.89 9.84 37.16 0.37 -1.53 16 14 C 0.13 2.25 3.77 -65.78 -0.25 2.00 16 15 H 0.09 1.16 7.91 -51.92 -0.41 0.75 16 16 C -0.16 -2.99 6.52 -24.89 -0.16 -3.16 16 17 C 0.19 4.63 4.22 -3.06 -0.01 4.62 16 18 N -0.57 -14.47 1.73 -170.08 -0.29 -14.76 16 19 C -0.19 -5.44 8.73 -15.06 -0.13 -5.58 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -27.75 10.31 55.49 0.57 -27.18 16 23 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C 0.13 2.66 6.17 -2.53 -0.02 2.64 16 28 O 0.11 1.64 7.07 15.54 0.11 1.75 16 29 N -0.37 -5.69 12.04 33.52 0.40 -5.29 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.47 6.56 -51.93 -0.34 0.12 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 36 H 0.06 0.74 7.48 -51.93 -0.39 0.35 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.18 3.06 7.65 -52.48 -0.40 2.66 16 39 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 40 H 0.08 1.03 5.27 -51.93 -0.27 0.76 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 1.52 5.87 -51.93 -0.30 1.22 16 47 H 0.03 0.91 7.50 -51.93 -0.39 0.52 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -32.43 384.54 -8.37 -40.79 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.27 Total: -1.89 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.29 Total: 1.94 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.26 Total: -57.50 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.16 Total: -7.10 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.43 -8.37 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033980953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.052 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds