Wall clock time and date at job start Tue Mar 31 2020 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 H 1.09002 * 109.47375 * 55.00049 * 3 2 1 5 5 C 1.53000 * 109.47155 * 295.00136 * 3 2 1 6 6 C 1.50703 * 109.47394 * 175.00167 * 3 2 1 7 7 C 1.41255 * 126.70813 * 84.99642 * 6 3 2 8 8 C 1.36819 * 103.85233 * 180.02562 * 7 6 3 9 9 C 1.47511 * 126.94565 * 180.02562 * 8 7 6 10 10 O 1.21578 * 120.00077 * 354.45189 * 9 8 7 11 11 N 1.34777 * 120.00015 * 174.44780 * 9 8 7 12 12 C 1.46506 * 119.99720 * 5.58007 * 11 9 8 13 13 C 1.53005 * 109.47009 * 83.93040 * 12 11 9 14 14 C 1.46499 * 120.00088 * 185.57846 * 11 9 8 15 15 H 1.09008 * 110.88567 * 190.10206 * 14 11 9 16 16 C 1.55155 * 111.00415 * 66.22523 * 14 11 9 17 17 C 1.54329 * 102.93849 * 277.42648 * 16 14 11 18 18 N 1.47017 * 107.27079 * 337.80765 * 17 16 14 19 19 C 1.36936 * 125.64760 * 178.98919 * 18 17 16 20 20 H 1.08002 * 120.00256 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00096 * 359.97315 * 19 18 17 22 22 N 1.31623 * 120.00211 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00147 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47278 * 59.99845 * 23 21 19 25 25 H 1.48506 * 109.46843 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46742 * 299.99736 * 23 21 19 27 27 C 1.47428 * 108.70786 * 358.94233 * 18 17 16 28 28 O 1.34644 * 106.10846 * 0.02562 * 8 7 6 29 29 N 1.20890 * 111.46908 * 359.71100 * 28 8 7 30 30 H 1.09002 * 109.47053 * 299.99640 * 1 2 3 31 31 H 1.08997 * 109.47301 * 60.00254 * 1 2 3 32 32 H 1.09006 * 109.46882 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47568 * 240.00295 * 2 1 3 34 34 H 1.08997 * 109.47301 * 119.99746 * 2 1 3 35 35 H 1.08996 * 109.47398 * 60.00097 * 5 3 2 36 36 H 1.09002 * 109.47340 * 299.99883 * 5 3 2 37 37 H 1.09006 * 109.47212 * 179.97438 * 5 3 2 38 38 H 1.08006 * 128.07402 * 0.02562 * 7 6 3 39 39 H 1.08997 * 109.46801 * 203.92411 * 12 11 9 40 40 H 1.08993 * 109.47141 * 323.92355 * 12 11 9 41 41 H 1.09000 * 109.46773 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.46825 * 299.99355 * 13 12 11 43 43 H 1.08990 * 109.47218 * 59.99655 * 13 12 11 44 44 H 1.08994 * 110.71858 * 35.78955 * 16 14 11 45 45 H 1.09004 * 110.71929 * 159.06626 * 16 14 11 46 46 H 1.08993 * 109.88332 * 97.22743 * 17 16 14 47 47 H 1.08998 * 109.87900 * 218.38900 * 17 16 14 48 48 H 0.96987 * 120.00424 * 179.97438 * 22 21 19 49 49 H 1.09004 * 110.36551 * 265.29029 * 27 18 17 50 50 H 1.08997 * 110.36889 * 142.96486 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3073 6 6 3.5419 1.4444 0.1238 7 6 4.4759 1.3140 -0.9278 8 6 5.6890 1.3767 -0.2981 9 6 7.0202 1.2924 -0.9279 10 8 7.1167 1.0514 -2.1156 11 7 8.1297 1.4826 -0.1866 12 6 8.0209 1.6514 1.2646 13 6 7.9581 0.2773 1.9346 14 6 9.4443 1.5206 -0.8320 15 1 10.2423 1.5024 -0.0897 16 6 9.5739 2.7590 -1.7576 17 6 8.8850 2.2925 -3.0574 18 7 8.9093 0.8226 -3.0610 19 6 8.3794 0.0180 -4.0342 20 1 8.4494 -1.0560 -3.9443 21 6 7.7522 0.5827 -5.1362 22 7 7.6673 1.8916 -5.2461 23 14 7.0287 -0.5148 -6.4634 24 1 5.9879 -1.3909 -5.8683 25 1 6.4201 0.3271 -7.5246 26 1 8.1035 -1.3530 -7.0528 27 6 9.5997 0.3581 -1.8440 28 8 5.4220 1.5309 1.0125 29 7 4.2317 1.5707 1.2199 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5489 2.1253 -1.3969 36 1 2.0698 1.5876 -2.1492 37 1 1.9981 3.1544 -1.3071 38 1 4.2785 1.1930 -1.9828 39 1 8.8902 2.1959 1.6332 40 1 7.1155 2.2114 1.4984 41 1 7.8767 0.4029 3.0143 42 1 7.0888 -0.2672 1.5660 43 1 8.8635 -0.2826 1.7007 44 1 9.0524 3.6157 -1.3308 45 1 10.6221 2.9959 -1.9403 46 1 7.8542 2.6463 -3.0782 47 1 9.4276 2.6744 -3.9222 48 1 7.2294 2.2862 -6.0163 49 1 10.6538 0.1749 -2.0524 50 1 9.1254 -0.5451 -1.4601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033980953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:08 Heat of formation + Delta-G solvation = 78.148373 kcal Electronic energy + Delta-G solvation = -31437.599176 eV Core-core repulsion = 27470.367305 eV Total energy + Delta-G solvation = -3967.231872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.99599 -41.31406 -38.15163 -37.91583 -36.78278 -34.23261 -34.12718 -32.69109 -31.47860 -30.46433 -30.40444 -28.84909 -26.52705 -26.27182 -25.28461 -24.11307 -23.61490 -22.38698 -21.78803 -21.35874 -19.86047 -18.89061 -18.70271 -18.08031 -17.53663 -17.12178 -16.51594 -16.36931 -15.95584 -15.83090 -15.60638 -15.21503 -14.94765 -14.64410 -14.46942 -14.41505 -13.68692 -13.67497 -13.57018 -13.48554 -13.40920 -13.05872 -12.93592 -12.80469 -12.73702 -12.67025 -12.49388 -12.26848 -12.19395 -12.05395 -11.99658 -11.98332 -11.64526 -11.62226 -11.57120 -11.36951 -11.00086 -10.76592 -10.52783 -10.44696 -9.44899 -8.32126 -7.61641 -4.84953 -0.10157 1.03441 1.44021 1.46731 1.51938 1.63719 2.22732 2.28070 2.61589 2.94205 3.36880 3.56746 3.77496 3.86490 3.89906 3.98564 4.01884 4.07532 4.14954 4.21055 4.23787 4.40529 4.45800 4.47725 4.50964 4.58064 4.63142 4.70552 4.76867 4.83494 4.85249 4.94732 4.97930 5.03393 5.06367 5.08220 5.09054 5.11362 5.14150 5.16906 5.34103 5.41361 5.43717 5.56636 5.83232 5.89852 6.02775 6.42669 6.47607 7.04031 7.34371 7.44404 8.04839 8.68354 9.50019 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004990 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.845976 B = 5610.340448 C = 7749.530725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.009 4.009 4 H 0.100 0.900 5 C -0.146 4.146 6 C 0.028 3.972 7 C -0.175 4.175 8 C -0.070 4.070 9 C 0.539 3.461 10 O -0.428 6.428 11 N -0.596 5.596 12 C 0.100 3.900 13 C -0.159 4.159 14 C 0.147 3.853 15 H 0.144 0.856 16 C -0.147 4.147 17 C 0.199 3.801 18 N -0.582 5.582 19 C -0.190 4.190 20 H 0.062 0.938 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.954 3.046 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.281 1.281 27 C 0.123 3.877 28 O 0.117 5.883 29 N -0.370 5.370 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.164 0.836 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.027 0.973 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.013 0.987 47 H -0.012 1.012 48 H 0.234 0.766 49 H 0.041 0.959 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 0.760 18.203 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.028 4.028 4 H 0.118 0.882 5 C -0.204 4.204 6 C -0.130 4.130 7 C -0.197 4.197 8 C -0.136 4.136 9 C 0.321 3.679 10 O -0.295 6.295 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.217 4.217 14 C 0.044 3.956 15 H 0.162 0.838 16 C -0.186 4.186 17 C 0.074 3.926 18 N -0.306 5.306 19 C -0.321 4.321 20 H 0.079 0.921 21 C -0.254 4.254 22 N -0.600 5.600 23 Si 0.785 3.215 24 H -0.217 1.217 25 H -0.225 1.225 26 H -0.208 1.208 27 C -0.004 4.004 28 O 0.049 5.951 29 N -0.074 5.074 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.182 0.818 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.031 0.969 47 H 0.006 0.994 48 H 0.044 0.956 49 H 0.058 0.942 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.681 0.786 18.612 19.791 hybrid contribution -0.567 -0.656 -2.121 2.291 sum -7.249 0.130 16.492 18.015 Atomic orbital electron populations 1.21790 0.93107 1.02624 1.02896 1.21538 0.97854 0.93962 1.01863 1.19732 0.83571 0.98630 1.00890 0.88209 1.21901 1.03229 1.00038 0.95207 1.23901 0.99812 1.01796 0.87511 1.22806 0.90521 1.04413 1.02004 1.24891 0.98007 1.06646 0.84050 1.17596 0.82097 0.81081 0.87132 1.91753 1.83048 1.41888 1.12836 1.47799 1.04912 1.72293 1.08119 1.21949 1.04406 0.98400 0.77401 1.22127 1.01309 0.96652 1.01641 1.22383 0.84008 0.94639 0.94599 0.83842 1.23268 1.01594 0.97561 0.96207 1.20782 0.96059 0.83627 0.92088 1.44289 1.63999 1.01855 1.20500 1.18985 1.27257 0.88796 0.97017 0.92056 1.25186 1.03002 0.96599 1.00652 1.70169 1.50596 1.09391 1.29850 0.85497 0.78422 0.77906 0.79648 1.21664 1.22513 1.20805 1.22006 0.95466 0.95575 0.87324 1.85113 1.18809 1.66734 1.24484 1.73581 0.90199 1.18985 1.24668 0.91638 0.91436 0.91886 0.92467 0.92500 0.88895 0.93034 0.92790 0.81821 0.86586 0.90472 0.89267 0.95360 0.91891 0.91112 0.89180 0.96858 0.99368 0.95638 0.94152 0.95556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 71.98 0.70 -1.43 16 2 C -0.11 -2.27 5.38 30.59 0.16 -2.11 16 3 C -0.01 -0.20 2.85 -11.54 -0.03 -0.23 16 4 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 5 C -0.15 -2.99 8.56 71.98 0.62 -2.37 16 6 C 0.03 0.82 6.20 43.55 0.27 1.09 16 7 C -0.18 -6.09 10.13 22.68 0.23 -5.86 16 8 C -0.07 -2.46 6.76 24.38 0.16 -2.30 16 9 C 0.54 21.32 7.07 86.69 0.61 21.93 16 10 O -0.43 -21.64 8.91 -3.96 -0.04 -21.67 16 11 N -0.60 -18.29 2.57 -793.88 -2.04 -20.33 16 12 C 0.10 2.13 5.70 86.38 0.49 2.62 16 13 C -0.16 -3.15 9.84 71.98 0.71 -2.44 16 14 C 0.15 4.50 3.77 46.38 0.17 4.67 16 15 H 0.14 2.92 7.91 -2.38 -0.02 2.90 16 16 C -0.15 -5.18 6.52 31.78 0.21 -4.97 16 17 C 0.20 10.14 4.22 86.73 0.37 10.51 16 18 N -0.58 -30.37 1.73 -692.00 -1.20 -31.57 16 19 C -0.19 -11.21 8.73 84.03 0.73 -10.48 16 20 H 0.06 3.57 7.83 -2.91 -0.02 3.54 16 21 C -0.06 -3.77 5.49 84.86 0.47 -3.31 16 22 N -0.95 -60.25 10.31 21.65 0.22 -60.03 16 23 Si 0.95 49.14 29.55 68.60 2.03 51.17 16 24 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 26 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 27 C 0.12 4.92 6.17 86.85 0.54 5.45 16 28 O 0.12 3.54 7.07 65.80 0.47 4.01 16 29 N -0.37 -11.18 12.04 -48.87 -0.59 -11.77 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.89 6.56 -2.39 -0.02 0.87 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.41 6.56 -2.39 -0.02 1.39 16 36 H 0.05 1.19 7.48 -2.39 -0.02 1.17 16 37 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.16 6.13 7.65 -2.91 -0.02 6.10 16 39 H 0.12 1.67 7.92 -2.39 -0.02 1.66 16 40 H 0.08 1.76 5.27 -2.39 -0.01 1.74 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 46 H 0.01 0.79 5.87 -2.39 -0.01 0.77 16 47 H -0.01 -0.69 7.50 -2.39 -0.02 -0.71 16 48 H 0.23 14.73 8.31 -92.72 -0.77 13.96 16 49 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.23 384.54 6.18 -70.05 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.92 Total: 9.36 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.40 Total: 10.77 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -3.60 Total: -123.69 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.43 Total: -17.66 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.03 Total: 51.17 kcal Total: -76.23 6.18 -70.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033980953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.201 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds