Wall clock time and date at job start Tue Mar 31 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46833 * 2 1 4 4 H 1.09003 * 109.47591 * 54.99954 * 3 2 1 5 5 C 1.52996 * 109.47669 * 294.99893 * 3 2 1 6 6 C 1.50704 * 109.47109 * 174.99860 * 3 2 1 7 7 C 1.41263 * 126.70298 * 85.00093 * 6 3 2 8 8 C 1.36825 * 103.84590 * 179.97438 * 7 6 3 9 9 C 1.47513 * 126.94801 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99271 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00495 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00087 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.32474 * 35.00031 * 12 11 9 14 14 C 1.47098 * 109.32815 * 154.64905 * 12 11 9 15 15 C 1.52566 * 114.32601 * 183.06032 * 14 12 11 16 16 C 1.50885 * 109.35330 * 274.98438 * 15 14 12 17 17 C 1.53944 * 110.09254 * 91.89420 * 16 15 14 18 18 N 1.47607 * 112.14096 * 319.43083 * 17 16 15 19 19 C 1.36940 * 118.64179 * 137.87477 * 18 17 16 20 20 H 1.08002 * 119.99548 * 207.05987 * 19 18 17 21 21 C 1.38813 * 120.00386 * 27.04964 * 19 18 17 22 22 N 1.31616 * 119.99816 * 16.58612 * 21 19 18 23 23 Si 1.86794 * 120.00237 * 196.58413 * 21 19 18 24 24 H 1.48496 * 109.47348 * 94.74003 * 23 21 19 25 25 H 1.48500 * 109.47352 * 214.74197 * 23 21 19 26 26 H 1.48502 * 109.46934 * 334.74303 * 23 21 19 27 27 C 1.44662 * 122.54134 * 317.85740 * 18 17 16 28 28 O 1.34650 * 106.11096 * 0.02562 * 8 7 6 29 29 N 1.20886 * 111.46613 * 359.97438 * 28 8 7 30 30 H 1.08998 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47285 * 299.99858 * 1 2 3 32 32 H 1.08999 * 109.46920 * 60.00302 * 1 2 3 33 33 H 1.08994 * 109.47401 * 240.00026 * 2 1 3 34 34 H 1.08999 * 109.46920 * 119.99698 * 2 1 3 35 35 H 1.08996 * 109.47929 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47125 * 300.00410 * 5 3 2 37 37 H 1.09001 * 109.46934 * 59.99892 * 5 3 2 38 38 H 1.07997 * 128.08059 * 0.02562 * 7 6 3 39 39 H 0.97005 * 119.99882 * 359.97438 * 11 9 8 40 40 H 1.08998 * 108.51235 * 304.31584 * 14 12 11 41 41 H 1.09007 * 108.50861 * 61.96254 * 14 12 11 42 42 H 1.08997 * 109.49316 * 34.94834 * 15 14 12 43 43 H 1.08994 * 109.49012 * 155.02214 * 15 14 12 44 44 H 1.09007 * 109.36455 * 212.08326 * 16 15 14 45 45 H 1.08997 * 109.36692 * 331.82560 * 16 15 14 46 46 H 1.09000 * 108.94823 * 80.11983 * 17 16 15 47 47 H 1.09001 * 108.94714 * 198.74892 * 17 16 15 48 48 H 0.97004 * 120.00270 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.61857 * 330.84685 * 27 18 17 50 50 H 1.08998 * 109.32321 * 210.89490 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4444 0.1239 7 6 4.4759 1.3140 -0.9278 8 6 5.6890 1.3778 -0.2982 9 6 7.0204 1.2941 -0.9279 10 8 7.1155 1.1536 -2.1318 11 7 8.1311 1.3733 -0.1687 12 6 9.4533 1.2907 -0.7942 13 1 9.4205 1.7718 -1.7718 14 6 10.4374 1.9795 0.0547 15 6 11.8467 2.0263 -0.5279 16 6 12.5752 0.7524 -0.1773 17 6 12.3864 -0.2896 -1.2946 18 7 11.0084 -0.2944 -1.8237 19 6 10.8252 -0.3953 -3.1770 20 1 9.9390 0.0194 -3.6343 21 6 11.7785 -1.0303 -3.9611 22 7 12.6782 -1.8104 -3.4005 23 14 11.7845 -0.7778 -5.8119 24 1 12.7309 0.3124 -6.1597 25 1 12.2084 -2.0336 -6.4815 26 1 10.4189 -0.4113 -6.2658 27 6 9.8460 -0.1972 -0.9680 28 8 5.4220 1.5325 1.0125 29 7 4.2317 1.5665 1.2205 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5876 -2.1491 37 1 0.5489 2.1253 -1.3969 38 1 4.2787 1.1931 -1.9827 39 1 8.0552 1.4857 0.7918 40 1 10.0970 3.0018 0.2196 41 1 10.4801 1.4706 1.0177 42 1 11.7890 2.1257 -1.6118 43 1 12.3839 2.8787 -0.1123 44 1 13.6376 0.9650 -0.0570 45 1 12.1784 0.3543 0.7566 46 1 13.0769 -0.0657 -2.1078 47 1 12.6170 -1.2787 -0.8989 48 1 13.3442 -2.2545 -3.9484 49 1 10.0721 -0.6291 0.0069 50 1 9.0174 -0.7406 -1.4221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034429332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:13 Heat of formation + Delta-G solvation = 13.033762 kcal Electronic energy + Delta-G solvation = -29522.025453 eV Core-core repulsion = 25551.970000 eV Total energy + Delta-G solvation = -3970.055453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -46.11147 -41.12324 -39.26545 -38.13372 -36.33370 -34.91243 -34.24096 -33.30677 -32.81995 -31.43657 -30.39914 -27.94010 -26.35754 -26.22534 -25.32838 -24.29288 -23.98018 -22.08041 -21.68377 -21.04966 -20.64093 -19.30247 -18.84839 -18.57557 -17.61379 -17.30717 -16.68712 -16.50084 -16.02107 -15.93455 -15.78572 -15.37848 -15.15878 -14.83004 -14.75575 -14.60447 -14.25195 -14.09455 -13.82756 -13.68298 -13.12482 -13.03091 -13.01352 -12.92361 -12.82322 -12.54406 -12.46456 -12.34109 -12.19635 -12.03560 -11.97239 -11.66556 -11.59715 -11.49395 -11.40364 -11.36475 -11.14524 -11.08489 -10.85711 -10.54199 -10.23190 -8.64276 -7.87161 -5.33163 -0.31836 0.95357 1.43135 1.44083 1.45388 1.54997 1.88157 2.12852 2.51894 2.89253 3.25592 3.35417 3.71849 3.82559 3.86628 3.92389 3.97039 4.05525 4.10717 4.13652 4.26388 4.41160 4.46022 4.50694 4.54613 4.60431 4.71141 4.73135 4.76507 4.82958 5.00044 5.01164 5.04669 5.06824 5.09253 5.12262 5.17164 5.21114 5.23957 5.36120 5.36605 5.37662 5.47527 5.60205 5.64980 5.72644 5.83602 6.29638 6.41734 6.93653 7.01367 7.18812 7.94044 8.30380 9.17416 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002679 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.600492 B =10447.866459 C =11667.540260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.012 4.012 4 H 0.095 0.905 5 C -0.147 4.147 6 C 0.026 3.974 7 C -0.149 4.149 8 C -0.083 4.083 9 C 0.600 3.400 10 O -0.547 6.547 11 N -0.691 5.691 12 C 0.133 3.867 13 H 0.057 0.943 14 C -0.112 4.112 15 C -0.097 4.097 16 C -0.131 4.131 17 C 0.184 3.816 18 N -0.596 5.596 19 C -0.261 4.261 20 H 0.052 0.948 21 C -0.043 4.043 22 N -0.931 5.931 23 Si 0.957 3.043 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.277 1.277 27 C 0.156 3.844 28 O 0.115 5.885 29 N -0.361 5.361 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.191 0.809 39 H 0.418 0.582 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.038 0.962 47 H -0.005 1.005 48 H 0.250 0.750 49 H 0.052 0.948 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.105 9.595 11.626 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.113 0.887 5 C -0.204 4.204 6 C -0.132 4.132 7 C -0.171 4.171 8 C -0.149 4.149 9 C 0.384 3.616 10 O -0.424 6.424 11 N -0.342 5.342 12 C 0.027 3.973 13 H 0.075 0.925 14 C -0.150 4.150 15 C -0.136 4.136 16 C -0.170 4.170 17 C 0.059 3.941 18 N -0.318 5.318 19 C -0.391 4.391 20 H 0.070 0.930 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.202 1.202 27 C 0.028 3.972 28 O 0.043 5.957 29 N -0.063 5.063 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.208 0.792 39 H 0.256 0.744 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.013 0.987 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -19.191 9.543 12.014 24.570 hybrid contribution 0.430 -0.484 -1.667 1.789 sum -18.761 9.059 10.346 23.261 Atomic orbital electron populations 1.21801 0.93438 1.02530 1.02856 1.21560 0.97635 0.94039 1.02160 1.19772 0.83311 0.98638 1.01365 0.88651 1.21921 1.03296 1.00241 0.94987 1.24042 1.00080 1.01615 0.87483 1.23051 0.89284 1.01875 1.02871 1.24070 0.96776 1.09334 0.84759 1.16734 0.81953 0.77195 0.85749 1.90927 1.85879 1.50751 1.14864 1.45881 1.04978 1.71616 1.11687 1.20903 0.80596 0.99060 0.96786 0.92472 1.20551 0.94311 1.00971 0.99124 1.20802 0.94630 0.97548 1.00572 1.21946 1.00610 0.95986 0.98447 1.20861 0.84643 0.94266 0.94298 1.43738 1.00860 1.84610 1.02543 1.19370 1.06018 1.29470 0.84291 0.92990 1.25658 0.99613 0.96920 1.01665 1.70217 1.20430 1.31586 1.35439 0.85402 0.77757 0.76901 0.81352 1.20848 1.21834 1.20210 1.21025 0.88972 0.93411 0.93835 1.84956 1.19566 1.66854 1.24275 1.73687 0.89401 1.18375 1.24794 0.92100 0.92103 0.91101 0.91551 0.92870 0.92423 0.91845 0.89261 0.79209 0.74396 0.90339 0.89999 0.93951 0.89765 0.91082 0.91547 0.94363 0.98699 0.94116 0.93013 0.96356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.72 16 2 C -0.12 -1.57 5.38 30.59 0.16 -1.41 16 3 C -0.01 -0.17 2.85 -11.54 -0.03 -0.20 16 4 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.15 -1.68 8.56 71.98 0.62 -1.06 16 6 C 0.03 0.54 6.20 43.56 0.27 0.81 16 7 C -0.15 -3.46 10.13 22.68 0.23 -3.23 16 8 C -0.08 -2.18 7.29 24.39 0.18 -2.00 16 9 C 0.60 19.00 7.77 86.69 0.67 19.68 16 10 O -0.55 -22.42 16.57 -3.98 -0.07 -22.49 16 11 N -0.69 -19.09 5.05 -451.49 -2.28 -21.38 16 12 C 0.13 4.53 2.34 43.79 0.10 4.63 16 13 H 0.06 2.39 7.57 -2.39 -0.02 2.38 16 14 C -0.11 -2.99 4.55 28.61 0.13 -2.86 16 15 C -0.10 -2.98 5.51 29.76 0.16 -2.81 16 16 C -0.13 -4.43 5.70 30.23 0.17 -4.26 16 17 C 0.18 8.71 4.67 86.49 0.40 9.11 16 18 N -0.60 -29.92 2.27 -698.17 -1.58 -31.50 16 19 C -0.26 -14.93 9.44 84.03 0.79 -14.14 16 20 H 0.05 3.11 7.88 -2.91 -0.02 3.08 16 21 C -0.04 -2.47 4.84 84.86 0.41 -2.06 16 22 N -0.93 -55.72 11.11 21.65 0.24 -55.48 16 23 Si 0.96 46.85 29.58 68.60 2.03 48.88 16 24 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 27 C 0.16 6.58 5.24 87.36 0.46 7.04 16 28 O 0.11 2.76 11.04 65.75 0.73 3.49 16 29 N -0.36 -8.67 12.04 -48.86 -0.59 -9.26 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.53 6.56 -2.39 -0.02 0.52 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.74 7.48 -2.39 -0.02 0.73 16 37 H 0.09 0.68 6.57 -2.39 -0.02 0.67 16 38 H 0.19 3.99 7.65 -2.91 -0.02 3.97 16 39 H 0.42 8.45 8.40 -92.70 -0.78 7.67 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.84 7.34 -2.38 -0.02 1.82 16 42 H 0.04 1.62 7.48 -2.39 -0.02 1.60 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.07 1.99 7.31 -2.39 -0.02 1.98 16 46 H 0.04 2.05 6.40 -2.39 -0.02 2.03 16 47 H -0.01 -0.27 8.03 -2.39 -0.02 -0.29 16 48 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 49 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 50 H 0.02 0.86 7.97 -2.39 -0.02 0.85 16 Total: -1.00 -70.86 395.44 4.06 -66.80 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.16 Total: 14.41 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.43 Total: 6.52 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -4.21 Total: -117.61 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.66 Total: -19.00 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -70.86 4.06 -66.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034429332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.832 kcal (2) G-P(sol) polarization free energy of solvation -70.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds