Wall clock time and date at job start Tue Mar 31 2020 18:58:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47196 * 179.97438 * 2 1
4 4 N 1.46896 * 109.47291 * 162.98259 * 3 2 1
5 5 C 1.46846 * 111.00360 * 294.21270 * 4 3 2
6 6 C 1.53043 * 109.52173 * 174.15772 * 5 4 3
7 7 C 1.53113 * 109.27805 * 59.17959 * 6 5 4
8 8 C 1.50707 * 109.52367 * 182.43729 * 7 6 5
9 9 O 1.21276 * 119.99667 * 119.68274 * 8 7 6
10 10 N 1.34770 * 119.99797 * 299.68981 * 8 7 6
11 11 C 1.46496 * 119.99853 * 180.02562 * 10 8 7
12 12 C 1.53008 * 109.47189 * 179.97438 * 11 10 8
13 13 H 1.08993 * 109.51024 * 59.89569 * 12 11 10
14 14 C 1.53293 * 109.51098 * 179.97438 * 12 11 10
15 15 N 1.47150 * 108.38551 * 172.22720 * 14 12 11
16 16 C 1.36926 * 120.98623 * 129.48699 * 15 14 12
17 17 H 1.08005 * 120.00040 * 333.60881 * 16 15 14
18 18 C 1.38813 * 120.00328 * 153.60892 * 16 15 14
19 19 N 1.31618 * 120.00232 * 343.17040 * 18 16 15
20 20 Si 1.86805 * 120.00159 * 163.16444 * 18 16 15
21 21 H 1.48505 * 109.46921 * 94.43402 * 20 18 16
22 22 H 1.48500 * 109.47034 * 214.43292 * 20 18 16
23 23 H 1.48497 * 109.47187 * 334.43301 * 20 18 16
24 24 C 1.47159 * 118.03302 * 309.46484 * 15 14 12
25 25 C 1.53292 * 108.38198 * 50.53058 * 24 15 14
26 26 O 1.42953 * 109.50916 * 299.74086 * 12 11 10
27 27 C 1.53118 * 109.16504 * 302.34342 * 7 6 5
28 28 C 1.46844 * 111.00081 * 170.00092 * 4 3 2
29 29 H 4.40888 * 5.52279 * 180.02562 * 4 1 2
30 30 H 1.08995 * 109.47258 * 282.99268 * 3 2 1
31 31 H 1.09005 * 109.47009 * 42.98995 * 3 2 1
32 32 H 1.08991 * 109.46207 * 294.17594 * 5 4 3
33 33 H 1.09000 * 109.46127 * 54.14711 * 5 4 3
34 34 H 1.08998 * 109.50090 * 299.23523 * 6 5 4
35 35 H 1.09000 * 109.49695 * 179.12505 * 6 5 4
36 36 H 1.09009 * 109.57507 * 62.28277 * 7 6 5
37 37 H 0.96998 * 120.00311 * 359.97438 * 10 8 7
38 38 H 1.09000 * 109.47120 * 299.99094 * 11 10 8
39 39 H 1.08994 * 109.47694 * 59.99158 * 11 10 8
40 40 H 1.09005 * 109.68499 * 291.95017 * 14 12 11
41 41 H 1.09000 * 109.68580 * 52.49927 * 14 12 11
42 42 H 0.96991 * 120.00733 * 179.97438 * 19 18 16
43 43 H 1.08999 * 109.68250 * 170.25949 * 24 15 14
44 44 H 1.09003 * 109.67693 * 290.77387 * 24 15 14
45 45 H 1.08997 * 109.51238 * 67.62783 * 25 24 15
46 46 H 1.09002 * 109.50806 * 187.76970 * 25 24 15
47 47 H 1.08997 * 109.50374 * 297.71759 * 27 7 6
48 48 H 1.08994 * 109.50749 * 177.59548 * 27 7 6
49 49 H 1.09010 * 109.46476 * 305.85836 * 28 4 3
50 50 H 1.08992 * 109.46638 * 65.83543 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1351 1.3252 -0.4053
5 6 2.7803 1.6128 -1.8010
6 6 3.1754 3.0513 -2.1430
7 6 4.6822 3.2251 -1.9336
8 6 5.0676 4.6553 -2.2113
9 8 5.5726 5.3278 -1.3374
10 7 4.8509 5.1870 -3.4305
11 6 5.2260 6.5771 -3.7007
12 6 4.8761 6.9278 -5.1483
13 1 3.8047 6.8025 -5.3045
14 6 5.2677 8.3825 -5.4318
15 7 5.0968 8.6372 -6.8710
16 6 4.3892 9.7217 -7.3157
17 1 3.6152 10.1521 -6.6975
18 6 4.6665 10.2682 -8.5613
19 7 5.7971 9.9789 -9.1700
20 14 3.4352 11.4143 -9.3737
21 1 3.7864 12.8222 -9.0580
22 1 3.4681 11.2137 -10.8447
23 1 2.0722 11.1179 -8.8641
24 6 5.7093 7.6920 -7.8181
25 6 5.2962 6.2710 -7.4183
26 8 5.5930 6.0656 -6.0350
27 6 5.0323 2.8728 -0.4852
28 6 4.5833 1.4396 -0.1912
29 1 -1.0502 -0.0002 0.0003
30 1 3.0094 -0.2302 1.0013
31 1 3.0097 -0.7509 -0.7008
32 1 3.3098 0.9244 -2.4595
33 1 1.7057 1.4897 -1.9353
34 1 2.6358 3.7409 -1.4940
35 1 2.9261 3.2594 -3.1835
36 1 5.2236 2.5640 -2.6103
37 1 4.4472 4.6491 -4.1295
38 1 4.6828 7.2379 -3.0251
39 1 6.2978 6.7009 -3.5461
40 1 4.6253 9.0535 -4.8614
41 1 6.3086 8.5438 -5.1515
42 1 5.9908 10.3604 -10.0404
43 1 5.3593 7.9057 -8.8280
44 1 6.7947 7.7842 -7.7786
45 1 4.2265 6.1426 -7.5837
46 1 5.8476 5.5486 -8.0202
47 1 4.5219 3.5597 0.1900
48 1 6.1097 2.9535 -0.3412
49 1 4.8183 1.1905 0.8437
50 1 5.1044 0.7521 -0.8574
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001035613422.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:58:03
Heat of formation + Delta-G solvation = -2.641640 kcal
Electronic energy + Delta-G solvation = -28907.018144 eV
Core-core repulsion = 24936.282955 eV
Total energy + Delta-G solvation = -3970.735190 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.36236 -38.92210 -38.30164 -34.97826 -34.80740 -34.29341 -32.57116 -31.55001
-31.13850 -30.61048 -28.06544 -27.29238 -25.54559 -23.88235 -23.47803 -23.16797
-21.81639 -20.81388 -19.98419 -19.48985 -18.49807 -17.39797 -16.86476 -16.37766
-16.13050 -15.67024 -15.61990 -15.22092 -15.03992 -14.91739 -14.45484 -14.19766
-14.00945 -13.84985 -13.64721 -13.32083 -13.24125 -13.12279 -12.99632 -12.74157
-12.40097 -12.20034 -11.75332 -11.58319 -11.48420 -11.15399 -11.07563 -10.88770
-10.83817 -10.73065 -10.69771 -10.48195 -10.43042 -10.31297 -10.01321 -9.79523
-9.60895 -9.10369 -8.94176 -8.78147 -8.57364 -6.78549 -5.87479 -3.31118
2.33806 2.50759 2.68870 3.22482 3.31921 3.39281 3.41333 3.63125
4.02269 4.20176 4.36444 4.40631 4.46941 4.60497 4.82477 4.89871
4.94527 5.03277 5.09558 5.12589 5.20554 5.25099 5.30194 5.37854
5.46093 5.49109 5.49564 5.57084 5.64694 5.73044 5.78896 5.86101
5.89083 6.01807 6.10667 6.13018 6.26931 6.33734 6.45619 6.54395
6.57703 6.64990 6.72823 7.06909 7.28183 7.48003 7.58900 7.67855
7.81769 8.28750 8.30392 9.08167 9.70905 10.27777 11.20717
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.020750 B = 0.002010 C = 0.001932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1349.090916 B =13928.414854 C =14492.564501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.182 4.182
3 C 0.162 3.838
4 N -0.537 5.537
5 C 0.057 3.943
6 C -0.107 4.107
7 C -0.108 4.108
8 C 0.516 3.484
9 O -0.544 6.544
10 N -0.719 5.719
11 C 0.130 3.870
12 C 0.065 3.935
13 H 0.058 0.942
14 C 0.121 3.879
15 N -0.594 5.594
16 C -0.255 4.255
17 H 0.069 0.931
18 C 0.002 3.998
19 N -0.903 5.903
20 Si 0.905 3.095
21 H -0.286 1.286
22 H -0.289 1.289
23 H -0.278 1.278
24 C 0.139 3.861
25 C 0.040 3.960
26 O -0.390 6.390
27 C -0.095 4.095
28 C 0.057 3.943
29 H 0.217 0.783
30 H 0.098 0.902
31 H 0.058 0.942
32 H 0.038 0.962
33 H 0.079 0.921
34 H 0.078 0.922
35 H 0.074 0.926
36 H 0.094 0.906
37 H 0.403 0.597
38 H 0.079 0.921
39 H 0.074 0.926
40 H 0.064 0.936
41 H 0.030 0.970
42 H 0.255 0.745
43 H 0.094 0.906
44 H 0.028 0.972
45 H 0.041 0.959
46 H 0.081 0.919
47 H 0.081 0.919
48 H 0.077 0.923
49 H 0.081 0.919
50 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.761 -21.360 14.764 26.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.182 4.182
3 C 0.036 3.964
4 N -0.262 5.262
5 C -0.070 4.070
6 C -0.145 4.145
7 C -0.130 4.130
8 C 0.302 3.698
9 O -0.422 6.422
10 N -0.370 5.370
11 C 0.006 3.994
12 C 0.005 3.995
13 H 0.076 0.924
14 C -0.006 4.006
15 N -0.318 5.318
16 C -0.385 4.385
17 H 0.087 0.913
18 C -0.197 4.197
19 N -0.547 5.547
20 Si 0.734 3.266
21 H -0.213 1.213
22 H -0.215 1.215
23 H -0.204 1.204
24 C 0.014 3.986
25 C -0.038 4.038
26 O -0.309 6.309
27 C -0.133 4.133
28 C -0.071 4.071
29 H 0.234 0.766
30 H 0.116 0.884
31 H 0.076 0.924
32 H 0.056 0.944
33 H 0.098 0.902
34 H 0.097 0.903
35 H 0.093 0.907
36 H 0.112 0.888
37 H 0.237 0.763
38 H 0.098 0.902
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.048 0.952
42 H 0.065 0.935
43 H 0.112 0.888
44 H 0.046 0.954
45 H 0.059 0.941
46 H 0.099 0.901
47 H 0.100 0.900
48 H 0.095 0.905
49 H 0.100 0.900
50 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -5.402 -20.550 15.563 26.338
hybrid contribution -0.702 0.017 -1.619 1.765
sum -6.104 -20.534 13.944 25.560
Atomic orbital electron populations
1.24933 0.95936 0.99647 1.00938 1.22812 0.94178 1.00776 1.00447
1.18979 0.85257 0.90331 1.01838 1.61889 1.14457 1.27544 1.22294
1.22109 1.01251 0.96128 0.87543 1.21584 0.93770 0.97043 1.02135
1.21400 0.97885 0.94109 0.99606 1.20521 0.78196 0.89019 0.82076
1.90693 1.43750 1.62596 1.45140 1.45955 1.63476 1.14305 1.13241
1.21419 1.01513 0.81922 0.94528 1.22802 0.95511 0.93293 0.87858
0.92390 1.21449 0.98901 0.92240 0.88010 1.44064 1.62352 1.26681
0.98656 1.19191 1.11209 1.06373 1.01682 0.91349 1.25058 0.96367
0.98568 0.99698 1.70029 1.21494 1.46936 1.16227 0.86243 0.80984
0.80606 0.78719 1.21329 1.21474 1.20377 1.21442 0.96168 0.85016
0.96019 1.23319 0.99157 1.00063 0.81246 1.87773 1.67339 1.58978
1.16833 1.21395 1.01797 0.95535 0.94602 1.22153 0.86202 0.97211
1.01513 0.76614 0.88385 0.92424 0.94369 0.90214 0.90286 0.90700
0.88785 0.76305 0.90246 0.90808 0.91774 0.95249 0.93491 0.88791
0.95368 0.94115 0.90066 0.90031 0.90467 0.90037 0.94427
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.46 19.25 29.55 0.57 -0.89 16
2 C -0.18 -1.51 12.34 -37.12 -0.46 -1.97 16
3 C 0.16 1.11 5.46 -6.62 -0.04 1.07 16
4 N -0.54 -4.29 4.63 -238.18 -1.10 -5.39 16
5 C 0.06 0.44 5.30 -3.83 -0.02 0.42 16
6 C -0.11 -0.90 5.26 -26.65 -0.14 -1.04 16
7 C -0.11 -1.02 2.59 -91.65 -0.24 -1.26 16
8 C 0.52 6.76 7.16 -10.98 -0.08 6.68 16
9 O -0.54 -9.17 15.98 5.56 0.09 -9.08 16
10 N -0.72 -9.20 5.36 -60.29 -0.32 -9.52 16
11 C 0.13 1.94 5.37 -4.04 -0.02 1.92 16
12 C 0.07 1.12 2.86 -26.58 -0.08 1.04 16
13 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
14 C 0.12 2.50 6.02 -3.54 -0.02 2.48 16
15 N -0.59 -14.69 3.05 -171.82 -0.52 -15.21 16
16 C -0.26 -6.88 9.65 -15.06 -0.15 -7.02 16
17 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16
18 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16
19 N -0.90 -25.78 11.15 55.49 0.62 -25.16 16
20 Si 0.91 21.26 29.59 -169.99 -5.03 16.23 16
21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16
22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
24 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16
25 C 0.04 0.75 6.98 37.31 0.26 1.01 16
26 O -0.39 -7.09 10.14 -35.23 -0.36 -7.45 16
27 C -0.10 -0.88 4.68 -26.65 -0.12 -1.00 16
28 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16
29 H 0.22 0.93 7.80 -54.08 -0.42 0.51 16
30 H 0.10 0.54 7.99 -51.93 -0.41 0.12 16
31 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16
32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
33 H 0.08 0.65 7.11 -51.93 -0.37 0.28 16
34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
35 H 0.07 0.55 7.67 -51.93 -0.40 0.16 16
36 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16
37 H 0.40 4.48 7.85 -40.82 -0.32 4.16 16
38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
40 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16
41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16
43 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16
44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
46 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
47 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16
48 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
49 H 0.08 0.49 8.02 -51.92 -0.42 0.08 16
50 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16
LS Contribution 400.57 15.07 6.04 6.04
Total: -1.00 -32.31 400.57 -9.78 -42.10
By element:
Atomic # 1 Polarization: 10.96 SS G_CDS: -8.53 Total: 2.42 kcal
Atomic # 6 Polarization: 5.68 SS G_CDS: -0.66 Total: 5.03 kcal
Atomic # 7 Polarization: -53.96 SS G_CDS: -1.33 Total: -55.29 kcal
Atomic # 8 Polarization: -16.25 SS G_CDS: -0.27 Total: -16.52 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -32.31 -9.78 -42.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035613422.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.457 kcal
(2) G-P(sol) polarization free energy of solvation -32.314 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.642 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds