Wall clock time and date at job start Tue Mar 31 2020 18:58:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47196 * 179.97438 * 2 1
4 4 N 1.46896 * 109.47291 * 162.98259 * 3 2 1
5 5 C 1.46846 * 111.00360 * 294.21270 * 4 3 2
6 6 C 1.53043 * 109.52173 * 174.15772 * 5 4 3
7 7 C 1.53113 * 109.27805 * 59.17959 * 6 5 4
8 8 C 1.50707 * 109.52367 * 182.43729 * 7 6 5
9 9 O 1.21276 * 119.99667 * 119.68274 * 8 7 6
10 10 N 1.34770 * 119.99797 * 299.68981 * 8 7 6
11 11 C 1.46496 * 119.99853 * 180.02562 * 10 8 7
12 12 C 1.53008 * 109.47189 * 179.97438 * 11 10 8
13 13 H 1.08993 * 109.51024 * 59.89569 * 12 11 10
14 14 C 1.53293 * 109.51098 * 179.97438 * 12 11 10
15 15 N 1.47150 * 108.38551 * 172.22720 * 14 12 11
16 16 C 1.36926 * 120.98623 * 129.48699 * 15 14 12
17 17 H 1.08005 * 120.00040 * 333.60881 * 16 15 14
18 18 C 1.38813 * 120.00328 * 153.60892 * 16 15 14
19 19 N 1.31618 * 120.00232 * 343.17040 * 18 16 15
20 20 Si 1.86805 * 120.00159 * 163.16444 * 18 16 15
21 21 H 1.48505 * 109.46921 * 94.43402 * 20 18 16
22 22 H 1.48500 * 109.47034 * 214.43292 * 20 18 16
23 23 H 1.48497 * 109.47187 * 334.43301 * 20 18 16
24 24 C 1.47159 * 118.03302 * 309.46484 * 15 14 12
25 25 C 1.53292 * 108.38198 * 50.53058 * 24 15 14
26 26 O 1.42953 * 109.50916 * 299.74086 * 12 11 10
27 27 C 1.53118 * 109.16504 * 302.34342 * 7 6 5
28 28 C 1.46844 * 111.00081 * 170.00092 * 4 3 2
29 29 H 4.40888 * 5.52279 * 180.02562 * 4 1 2
30 30 H 1.08995 * 109.47258 * 282.99268 * 3 2 1
31 31 H 1.09005 * 109.47009 * 42.98995 * 3 2 1
32 32 H 1.08991 * 109.46207 * 294.17594 * 5 4 3
33 33 H 1.09000 * 109.46127 * 54.14711 * 5 4 3
34 34 H 1.08998 * 109.50090 * 299.23523 * 6 5 4
35 35 H 1.09000 * 109.49695 * 179.12505 * 6 5 4
36 36 H 1.09009 * 109.57507 * 62.28277 * 7 6 5
37 37 H 0.96998 * 120.00311 * 359.97438 * 10 8 7
38 38 H 1.09000 * 109.47120 * 299.99094 * 11 10 8
39 39 H 1.08994 * 109.47694 * 59.99158 * 11 10 8
40 40 H 1.09005 * 109.68499 * 291.95017 * 14 12 11
41 41 H 1.09000 * 109.68580 * 52.49927 * 14 12 11
42 42 H 0.96991 * 120.00733 * 179.97438 * 19 18 16
43 43 H 1.08999 * 109.68250 * 170.25949 * 24 15 14
44 44 H 1.09003 * 109.67693 * 290.77387 * 24 15 14
45 45 H 1.08997 * 109.51238 * 67.62783 * 25 24 15
46 46 H 1.09002 * 109.50806 * 187.76970 * 25 24 15
47 47 H 1.08997 * 109.50374 * 297.71759 * 27 7 6
48 48 H 1.08994 * 109.50749 * 177.59548 * 27 7 6
49 49 H 1.09010 * 109.46476 * 305.85836 * 28 4 3
50 50 H 1.08992 * 109.46638 * 65.83543 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1351 1.3252 -0.4053
5 6 2.7803 1.6128 -1.8010
6 6 3.1754 3.0513 -2.1430
7 6 4.6822 3.2251 -1.9336
8 6 5.0676 4.6553 -2.2113
9 8 5.5726 5.3278 -1.3374
10 7 4.8509 5.1870 -3.4305
11 6 5.2260 6.5771 -3.7007
12 6 4.8761 6.9278 -5.1483
13 1 3.8047 6.8025 -5.3045
14 6 5.2677 8.3825 -5.4318
15 7 5.0968 8.6372 -6.8710
16 6 4.3892 9.7217 -7.3157
17 1 3.6152 10.1521 -6.6975
18 6 4.6665 10.2682 -8.5613
19 7 5.7971 9.9789 -9.1700
20 14 3.4352 11.4143 -9.3737
21 1 3.7864 12.8222 -9.0580
22 1 3.4681 11.2137 -10.8447
23 1 2.0722 11.1179 -8.8641
24 6 5.7093 7.6920 -7.8181
25 6 5.2962 6.2710 -7.4183
26 8 5.5930 6.0656 -6.0350
27 6 5.0323 2.8728 -0.4852
28 6 4.5833 1.4396 -0.1912
29 1 -1.0502 -0.0002 0.0003
30 1 3.0094 -0.2302 1.0013
31 1 3.0097 -0.7509 -0.7008
32 1 3.3098 0.9244 -2.4595
33 1 1.7057 1.4897 -1.9353
34 1 2.6358 3.7409 -1.4940
35 1 2.9261 3.2594 -3.1835
36 1 5.2236 2.5640 -2.6103
37 1 4.4472 4.6491 -4.1295
38 1 4.6828 7.2379 -3.0251
39 1 6.2978 6.7009 -3.5461
40 1 4.6253 9.0535 -4.8614
41 1 6.3086 8.5438 -5.1515
42 1 5.9908 10.3604 -10.0404
43 1 5.3593 7.9057 -8.8280
44 1 6.7947 7.7842 -7.7786
45 1 4.2265 6.1426 -7.5837
46 1 5.8476 5.5486 -8.0202
47 1 4.5219 3.5597 0.1900
48 1 6.1097 2.9535 -0.3412
49 1 4.8183 1.1905 0.8437
50 1 5.1044 0.7521 -0.8574
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035613422.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:58:02
Heat of formation + Delta-G solvation = -24.958560 kcal
Electronic energy + Delta-G solvation = -28907.985879 eV
Core-core repulsion = 24936.282955 eV
Total energy + Delta-G solvation = -3971.702924 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.30555 -40.18451 -39.35377 -36.52683 -35.76294 -35.51704 -33.45149 -33.12701
-32.23233 -31.72207 -29.37191 -28.40709 -26.99414 -25.06920 -24.61867 -24.11946
-23.25289 -21.84940 -21.30460 -20.53491 -19.00175 -18.91583 -18.24328 -17.52322
-17.26764 -16.93951 -16.62526 -16.29226 -16.13289 -15.99816 -15.65180 -15.51574
-15.27145 -15.04668 -14.78494 -14.65704 -14.48734 -14.21792 -13.96054 -13.73021
-13.46870 -13.22684 -13.02756 -12.94983 -12.69854 -12.51012 -12.48337 -12.19873
-12.15428 -12.07946 -11.88408 -11.76911 -11.50032 -11.33955 -11.28280 -11.02172
-10.82611 -10.74554 -10.53852 -10.08830 -9.30456 -8.76542 -7.92534 -5.39920
1.45792 1.47138 1.57374 1.65337 1.78801 1.96243 2.16217 2.47802
2.77531 3.09784 3.22680 3.47972 3.54786 3.60572 3.79099 3.86085
3.98677 4.05858 4.21129 4.22957 4.28995 4.39143 4.44025 4.47833
4.51380 4.54693 4.59833 4.62358 4.69559 4.71002 4.75330 4.78971
4.89286 4.91543 4.95642 5.04885 5.10671 5.15064 5.20034 5.23405
5.35085 5.44538 5.54543 5.60325 6.04629 6.11153 6.24457 6.31976
6.57347 6.75112 7.05021 7.26068 7.72977 8.26593 9.13538
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.020750 B = 0.002010 C = 0.001932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1349.090916 B =13928.414854 C =14492.564501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.210 4.210
3 C 0.162 3.838
4 N -0.553 5.553
5 C 0.061 3.939
6 C -0.102 4.102
7 C -0.099 4.099
8 C 0.515 3.485
9 O -0.586 6.586
10 N -0.711 5.711
11 C 0.140 3.860
12 C 0.081 3.919
13 H 0.070 0.930
14 C 0.116 3.884
15 N -0.613 5.613
16 C -0.266 4.266
17 H 0.072 0.928
18 C -0.051 4.051
19 N -0.936 5.936
20 Si 0.972 3.028
21 H -0.287 1.287
22 H -0.290 1.290
23 H -0.267 1.267
24 C 0.142 3.858
25 C 0.055 3.945
26 O -0.388 6.388
27 C -0.093 4.093
28 C 0.063 3.937
29 H 0.239 0.761
30 H 0.109 0.891
31 H 0.071 0.929
32 H 0.052 0.948
33 H 0.075 0.925
34 H 0.060 0.940
35 H 0.088 0.912
36 H 0.116 0.884
37 H 0.414 0.586
38 H 0.084 0.916
39 H 0.059 0.941
40 H 0.071 0.929
41 H 0.016 0.984
42 H 0.252 0.748
43 H 0.067 0.933
44 H -0.002 1.002
45 H 0.052 0.948
46 H 0.110 0.890
47 H 0.057 0.943
48 H 0.072 0.928
49 H 0.092 0.908
50 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.184 -23.428 15.077 28.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.211 4.211
3 C 0.036 3.964
4 N -0.279 5.279
5 C -0.067 4.067
6 C -0.140 4.140
7 C -0.120 4.120
8 C 0.302 3.698
9 O -0.466 6.466
10 N -0.362 5.362
11 C 0.016 3.984
12 C 0.021 3.979
13 H 0.088 0.912
14 C -0.011 4.011
15 N -0.337 5.337
16 C -0.396 4.396
17 H 0.090 0.910
18 C -0.247 4.247
19 N -0.582 5.582
20 Si 0.799 3.201
21 H -0.214 1.214
22 H -0.217 1.217
23 H -0.192 1.192
24 C 0.016 3.984
25 C -0.023 4.023
26 O -0.307 6.307
27 C -0.131 4.131
28 C -0.064 4.064
29 H 0.256 0.744
30 H 0.127 0.873
31 H 0.089 0.911
32 H 0.070 0.930
33 H 0.093 0.907
34 H 0.078 0.922
35 H 0.107 0.893
36 H 0.134 0.866
37 H 0.250 0.750
38 H 0.103 0.897
39 H 0.077 0.923
40 H 0.089 0.911
41 H 0.034 0.966
42 H 0.061 0.939
43 H 0.086 0.914
44 H 0.016 0.984
45 H 0.070 0.930
46 H 0.128 0.872
47 H 0.075 0.925
48 H 0.090 0.910
49 H 0.110 0.890
50 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -6.845 -22.655 15.889 28.506
hybrid contribution -0.238 0.696 -1.647 1.804
sum -7.083 -21.960 14.242 27.115
Atomic orbital electron populations
1.25664 0.96894 0.98950 1.00373 1.23365 0.95138 1.01468 1.01085
1.19071 0.84608 0.89958 1.02798 1.61844 1.14903 1.28603 1.22501
1.22060 1.01141 0.95618 0.87844 1.21547 0.92535 0.97337 1.02550
1.21409 0.98841 0.91618 1.00175 1.21181 0.77066 0.90209 0.81297
1.90679 1.45636 1.63924 1.46343 1.45852 1.63235 1.13448 1.13705
1.21162 1.00713 0.83493 0.93064 1.22621 0.95882 0.90654 0.88715
0.91242 1.21611 0.98376 0.95046 0.86049 1.44344 1.62271 1.26691
1.00394 1.19544 1.11310 1.06808 1.01918 0.91011 1.25846 0.97959
1.00490 1.00379 1.70186 1.23225 1.48399 1.16351 0.85205 0.79186
0.78342 0.77351 1.21439 1.21662 1.19163 1.21327 0.94206 0.87920
0.94906 1.23153 1.00159 0.97221 0.81744 1.87789 1.67653 1.58679
1.16588 1.21349 1.01248 0.96572 0.93976 1.22102 0.85954 0.95764
1.02609 0.74437 0.87312 0.91124 0.93008 0.90672 0.92165 0.89334
0.86581 0.74966 0.89748 0.92279 0.91084 0.96620 0.93915 0.91425
0.98407 0.92970 0.87224 0.92454 0.90956 0.88981 0.92844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.69 19.25 74.32 1.43 -1.25 16
2 C -0.21 -3.17 12.34 31.12 0.38 -2.79 16
3 C 0.16 1.87 5.46 84.50 0.46 2.33 16
4 N -0.55 -7.76 4.63 -907.48 -4.21 -11.96 16
5 C 0.06 0.80 5.30 86.33 0.46 1.26 16
6 C -0.10 -1.51 5.26 30.65 0.16 -1.35 16
7 C -0.10 -1.68 2.59 -11.46 -0.03 -1.71 16
8 C 0.51 12.88 7.16 87.66 0.63 13.50 16
9 O -0.59 -19.67 15.98 -3.02 -0.05 -19.72 16
10 N -0.71 -16.90 5.36 -463.07 -2.48 -19.38 16
11 C 0.14 4.04 5.37 86.38 0.46 4.50 16
12 C 0.08 2.64 2.86 30.70 0.09 2.73 16
13 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
14 C 0.12 4.76 6.02 86.35 0.52 5.28 16
15 N -0.61 -30.51 3.05 -697.53 -2.13 -32.63 16
16 C -0.27 -14.39 9.65 84.04 0.81 -13.58 16
17 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16
18 C -0.05 -2.82 4.95 84.86 0.42 -2.40 16
19 N -0.94 -54.69 11.15 21.65 0.24 -54.45 16
20 Si 0.97 43.94 29.59 68.60 2.03 45.97 16
21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
22 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16
23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16
24 C 0.14 6.75 5.44 86.35 0.47 7.22 16
25 C 0.05 1.96 6.98 72.08 0.50 2.46 16
26 O -0.39 -13.34 10.14 -148.98 -1.51 -14.85 16
27 C -0.09 -1.62 4.68 30.65 0.14 -1.47 16
28 C 0.06 0.76 5.46 86.33 0.47 1.23 16
29 H 0.24 1.61 7.80 -4.41 -0.03 1.57 16
30 H 0.11 0.97 7.99 -2.39 -0.02 0.95 16
31 H 0.07 0.62 8.12 -2.38 -0.02 0.60 16
32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
33 H 0.07 1.08 7.11 -2.39 -0.02 1.06 16
34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
35 H 0.09 1.06 7.67 -2.39 -0.02 1.04 16
36 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16
37 H 0.41 8.04 7.85 -92.71 -0.73 7.31 16
38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
40 H 0.07 2.77 7.96 -2.38 -0.02 2.76 16
41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16
43 H 0.07 3.56 6.15 -2.39 -0.01 3.54 16
44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16
45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
46 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16
47 H 0.06 1.27 8.04 -2.39 -0.02 1.25 16
48 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
49 H 0.09 0.92 8.02 -2.38 -0.02 0.90 16
50 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
Total: -1.00 -70.88 400.57 -0.53 -71.41
By element:
Atomic # 1 Polarization: 19.47 SS G_CDS: 0.19 Total: 19.65 kcal
Atomic # 6 Polarization: 8.58 SS G_CDS: 7.38 Total: 15.96 kcal
Atomic # 7 Polarization: -109.85 SS G_CDS: -8.57 Total: -118.43 kcal
Atomic # 8 Polarization: -33.01 SS G_CDS: -1.56 Total: -34.57 kcal
Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal
Total: -70.88 -0.53 -71.41 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035613422.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.451 kcal
(2) G-P(sol) polarization free energy of solvation -70.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.427 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.959 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds