Wall clock time and date at job start Tue Mar 31 2020 18:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46893 * 109.47259 * 66.66111 * 3 2 1 5 5 C 1.46854 * 110.99786 * 190.00081 * 4 3 2 6 6 C 1.53039 * 109.51883 * 185.83704 * 5 4 3 7 7 C 1.53121 * 109.27886 * 300.81484 * 6 5 4 8 8 C 1.50698 * 109.52195 * 177.56425 * 7 6 5 9 9 O 1.21287 * 120.00045 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00336 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00428 * 179.72464 * 10 8 7 12 12 C 1.52995 * 109.47336 * 180.27245 * 11 10 8 13 13 H 1.09000 * 109.51586 * 305.00108 * 12 11 10 14 14 C 1.53290 * 109.51482 * 184.89492 * 12 11 10 15 15 N 1.47150 * 108.38694 * 187.77510 * 14 12 11 16 16 C 1.36941 * 120.98442 * 230.55898 * 15 14 12 17 17 H 1.08005 * 119.99561 * 26.23915 * 16 15 14 18 18 C 1.38813 * 120.00385 * 206.23795 * 16 15 14 19 19 N 1.31623 * 119.99605 * 16.90895 * 18 16 15 20 20 Si 1.86790 * 120.00160 * 196.90448 * 18 16 15 21 21 H 1.48507 * 109.47278 * 90.00373 * 20 18 16 22 22 H 1.48498 * 109.47272 * 210.00037 * 20 18 16 23 23 H 1.48499 * 109.47505 * 330.00205 * 20 18 16 24 24 C 1.47152 * 118.03935 * 50.53531 * 15 14 12 25 25 C 1.53298 * 108.38048 * 309.47068 * 24 15 14 26 26 O 1.42957 * 109.26789 * 52.27402 * 25 24 15 27 27 C 1.53119 * 109.15961 * 57.65865 * 7 6 5 28 28 C 1.46852 * 110.99828 * 314.20273 * 4 3 2 29 29 H 4.40885 * 5.52212 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47125 * 306.65299 * 3 2 1 31 31 H 1.08997 * 109.46630 * 186.65897 * 3 2 1 32 32 H 1.09000 * 109.46036 * 65.81949 * 5 4 3 33 33 H 1.08996 * 109.45690 * 305.84827 * 5 4 3 34 34 H 1.09002 * 109.50030 * 180.87694 * 6 5 4 35 35 H 1.08998 * 109.53605 * 60.78267 * 6 5 4 36 36 H 1.08995 * 109.52214 * 297.69251 * 7 6 5 37 37 H 0.97001 * 119.99385 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46981 * 300.27405 * 11 10 8 39 39 H 1.08997 * 109.47241 * 60.27076 * 11 10 8 40 40 H 1.09000 * 109.68617 * 307.49929 * 14 12 11 41 41 H 1.09007 * 109.68132 * 68.01817 * 14 12 11 42 42 H 0.97000 * 119.99843 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.67908 * 69.18563 * 24 15 14 44 44 H 1.08997 * 109.68524 * 189.70688 * 24 15 14 45 45 H 1.09004 * 109.50635 * 172.22421 * 25 24 15 46 46 H 1.08997 * 109.50865 * 292.36986 * 25 24 15 47 47 H 1.09005 * 109.50293 * 62.28651 * 27 7 6 48 48 H 1.08994 * 109.50392 * 182.40163 * 27 7 6 49 49 H 1.08993 * 109.46460 * 294.18107 * 28 4 3 50 50 H 1.08997 * 109.45887 * 54.14818 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1360 -0.5478 -1.2716 5 6 4.5845 -0.7840 -1.2195 6 6 5.0822 -1.2155 -2.6009 7 6 4.3528 -2.4934 -3.0246 8 6 4.7950 -2.8900 -4.4096 9 8 5.6135 -2.2179 -5.0006 10 7 4.2811 -3.9917 -4.9915 11 6 4.7065 -4.3740 -6.3402 12 6 3.9725 -5.6474 -6.7648 13 1 4.1357 -6.4270 -6.0207 14 6 4.5052 -6.1167 -8.1234 15 7 3.6611 -7.2259 -8.5950 16 6 4.2166 -8.4032 -9.0200 17 1 5.1814 -8.7114 -8.6448 18 6 3.5398 -9.2004 -9.9328 19 7 2.5492 -8.6973 -10.6385 20 14 4.0350 -10.9872 -10.1597 21 1 3.2619 -11.8383 -9.2198 22 1 3.7501 -11.4064 -11.5555 23 1 5.4864 -11.1375 -9.8842 24 6 2.2023 -7.0330 -8.5959 25 6 1.7818 -6.5190 -7.2142 26 8 2.5729 -5.3777 -6.8746 27 6 2.8436 -2.2344 -3.0239 28 6 2.4108 -1.7733 -1.6303 29 1 -1.0499 0.0001 -0.0003 30 1 3.0097 -0.6127 0.8245 31 1 3.0089 1.0216 0.1192 32 1 4.7985 -1.5694 -0.4946 33 1 5.0915 0.1336 -0.9211 34 1 6.1546 -1.4058 -2.5582 35 1 4.8814 -0.4250 -3.3240 36 1 4.5860 -3.2952 -2.3241 37 1 3.6268 -4.5295 -4.5187 38 1 4.4713 -3.5695 -7.0370 39 1 5.7813 -4.5555 -6.3444 40 1 4.4639 -5.2945 -8.8379 41 1 5.5348 -6.4582 -8.0159 42 1 2.0765 -9.2542 -11.2766 43 1 1.9291 -6.3030 -9.3579 44 1 1.7066 -7.9816 -8.8018 45 1 0.7285 -6.2388 -7.2352 46 1 1.9362 -7.3021 -6.4720 47 1 2.6070 -1.4597 -3.7534 48 1 2.3167 -3.1525 -3.2835 49 1 2.6351 -2.5540 -0.9036 50 1 1.3391 -1.5743 -1.6302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035613428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:06 Heat of formation + Delta-G solvation = -1.508225 kcal Electronic energy + Delta-G solvation = -28979.026122 eV Core-core repulsion = 25008.340081 eV Total energy + Delta-G solvation = -3970.686041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.36686 -38.93619 -38.31193 -35.00030 -34.82211 -34.30052 -32.58377 -31.53679 -31.07266 -30.61382 -28.08889 -27.29347 -25.54487 -23.86285 -23.46433 -23.16935 -21.81847 -20.82474 -20.00294 -19.45862 -18.47669 -17.40152 -16.86606 -16.39119 -16.04760 -15.81094 -15.53922 -15.24739 -15.02710 -14.83710 -14.44833 -14.30205 -14.04542 -13.81857 -13.55421 -13.35788 -13.23379 -13.09930 -13.02841 -12.72594 -12.39430 -12.20381 -11.69209 -11.58674 -11.46693 -11.15227 -11.04678 -10.90733 -10.88033 -10.75078 -10.70665 -10.49395 -10.43173 -10.28015 -10.01519 -9.78730 -9.61098 -9.09576 -8.95196 -8.73079 -8.57448 -6.78986 -5.87342 -3.31252 2.31262 2.47169 2.68061 3.22726 3.32147 3.39227 3.40617 3.63678 3.95359 4.20807 4.37735 4.40531 4.49175 4.61011 4.86280 4.90659 4.96759 5.03863 5.11681 5.13332 5.21824 5.26952 5.29981 5.40724 5.46984 5.49548 5.51554 5.56082 5.64769 5.75423 5.79283 5.85305 5.92599 6.02056 6.11491 6.13270 6.26842 6.33993 6.45890 6.54257 6.58814 6.66673 6.73013 7.07322 7.23331 7.48514 7.57717 7.67774 7.82672 8.28140 8.30323 9.08159 9.70768 10.27581 11.20752 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.002039 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.609001 B =13728.214974 C =14494.644216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.162 3.838 4 N -0.536 5.536 5 C 0.056 3.944 6 C -0.095 4.095 7 C -0.108 4.108 8 C 0.516 3.484 9 O -0.544 6.544 10 N -0.720 5.720 11 C 0.130 3.870 12 C 0.065 3.935 13 H 0.058 0.942 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.389 6.389 27 C -0.107 4.107 28 C 0.055 3.945 29 H 0.218 0.782 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.402 0.598 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.028 0.972 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.036 0.964 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 14.211 22.293 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.130 4.130 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.371 5.371 11 C 0.006 3.994 12 C 0.006 3.994 13 H 0.076 0.924 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.145 4.145 28 C -0.072 4.072 29 H 0.235 0.765 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.054 0.946 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.806 15.105 21.352 26.168 hybrid contribution -0.190 -2.155 0.518 2.225 sum -0.997 12.950 21.870 25.436 Atomic orbital electron populations 1.24961 0.95963 1.00674 0.99586 1.22796 0.94248 1.00651 1.00958 1.19076 0.84823 1.01422 0.91071 1.62069 1.04338 1.29786 1.29867 1.22159 0.87013 1.00625 0.97322 1.21392 0.99473 0.96403 0.96056 1.21398 0.97259 0.99771 0.94549 1.20530 0.81148 0.80254 0.87876 1.90696 1.33621 1.52517 1.65302 1.45986 1.45330 1.27793 1.17963 1.21408 0.98388 0.96739 0.82876 1.22795 0.82810 0.94756 0.99083 0.92446 1.21444 0.95153 0.91890 0.92090 1.44071 1.00741 1.11774 1.75194 1.19210 1.04502 0.95449 1.19323 0.91309 1.25061 0.99305 0.99454 0.95891 1.70037 1.24861 1.34739 1.25024 0.86225 0.78255 0.84849 0.77049 1.21383 1.21660 1.20366 1.21448 0.84801 1.01200 0.91213 1.23320 0.93889 0.87558 0.99030 1.87790 1.17064 1.34978 1.91031 1.21591 0.93156 1.02260 0.97536 1.22155 0.99113 0.89984 0.95979 0.76504 0.92465 0.88278 0.94493 0.90009 0.90508 0.89972 0.88940 0.76392 0.90708 0.90226 0.95216 0.91792 0.93471 0.95358 0.88762 0.90048 0.94156 0.90226 0.90591 0.94588 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 19.02 29.55 0.56 -0.85 16 2 C -0.19 -1.53 11.51 -37.12 -0.43 -1.96 16 3 C 0.16 1.12 5.77 -6.61 -0.04 1.09 16 4 N -0.54 -4.39 4.79 -238.18 -1.14 -5.53 16 5 C 0.06 0.41 5.42 -3.83 -0.02 0.38 16 6 C -0.10 -0.88 4.68 -26.65 -0.12 -1.00 16 7 C -0.11 -1.03 2.59 -91.65 -0.24 -1.27 16 8 C 0.52 6.76 7.16 -10.99 -0.08 6.68 16 9 O -0.54 -9.16 15.98 5.55 0.09 -9.07 16 10 N -0.72 -9.19 5.41 -60.30 -0.33 -9.52 16 11 C 0.13 1.94 5.34 -4.05 -0.02 1.92 16 12 C 0.07 1.12 2.81 -26.58 -0.07 1.05 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.12 2.51 6.02 -3.54 -0.02 2.49 16 15 N -0.59 -14.71 3.05 -171.83 -0.52 -15.23 16 16 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 17 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 18 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 19 N -0.90 -25.80 11.14 55.49 0.62 -25.18 16 20 Si 0.91 21.29 29.59 -169.99 -5.03 16.26 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.14 3.27 5.45 -3.53 -0.02 3.25 16 25 C 0.04 0.75 6.98 37.31 0.26 1.01 16 26 O -0.39 -7.14 10.33 -35.23 -0.36 -7.50 16 27 C -0.11 -0.96 5.26 -26.65 -0.14 -1.10 16 28 C 0.06 0.45 5.08 -3.83 -0.02 0.44 16 29 H 0.22 0.91 7.80 -54.10 -0.42 0.49 16 30 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 4.44 7.96 -40.82 -0.32 4.11 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 49 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.73 6.36 -51.93 -0.33 0.40 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -32.25 399.45 -9.80 -42.05 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.51 Total: 2.65 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.63 Total: 5.05 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -1.37 Total: -55.47 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.28 Total: -16.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.25 -9.80 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035613428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.546 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds