Wall clock time and date at job start Tue Mar 31 2020 18:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46893 * 109.47259 * 66.66111 * 3 2 1 5 5 C 1.46854 * 110.99786 * 190.00081 * 4 3 2 6 6 C 1.53039 * 109.51883 * 185.83704 * 5 4 3 7 7 C 1.53121 * 109.27886 * 300.81484 * 6 5 4 8 8 C 1.50698 * 109.52195 * 177.56425 * 7 6 5 9 9 O 1.21287 * 120.00045 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00336 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00428 * 179.72464 * 10 8 7 12 12 C 1.52995 * 109.47336 * 180.27245 * 11 10 8 13 13 H 1.09000 * 109.51586 * 305.00108 * 12 11 10 14 14 C 1.53290 * 109.51482 * 184.89492 * 12 11 10 15 15 N 1.47150 * 108.38694 * 187.77510 * 14 12 11 16 16 C 1.36941 * 120.98442 * 230.55898 * 15 14 12 17 17 H 1.08005 * 119.99561 * 26.23915 * 16 15 14 18 18 C 1.38813 * 120.00385 * 206.23795 * 16 15 14 19 19 N 1.31623 * 119.99605 * 16.90895 * 18 16 15 20 20 Si 1.86790 * 120.00160 * 196.90448 * 18 16 15 21 21 H 1.48507 * 109.47278 * 90.00373 * 20 18 16 22 22 H 1.48498 * 109.47272 * 210.00037 * 20 18 16 23 23 H 1.48499 * 109.47505 * 330.00205 * 20 18 16 24 24 C 1.47152 * 118.03935 * 50.53531 * 15 14 12 25 25 C 1.53298 * 108.38048 * 309.47068 * 24 15 14 26 26 O 1.42957 * 109.26789 * 52.27402 * 25 24 15 27 27 C 1.53119 * 109.15961 * 57.65865 * 7 6 5 28 28 C 1.46852 * 110.99828 * 314.20273 * 4 3 2 29 29 H 4.40885 * 5.52212 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47125 * 306.65299 * 3 2 1 31 31 H 1.08997 * 109.46630 * 186.65897 * 3 2 1 32 32 H 1.09000 * 109.46036 * 65.81949 * 5 4 3 33 33 H 1.08996 * 109.45690 * 305.84827 * 5 4 3 34 34 H 1.09002 * 109.50030 * 180.87694 * 6 5 4 35 35 H 1.08998 * 109.53605 * 60.78267 * 6 5 4 36 36 H 1.08995 * 109.52214 * 297.69251 * 7 6 5 37 37 H 0.97001 * 119.99385 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46981 * 300.27405 * 11 10 8 39 39 H 1.08997 * 109.47241 * 60.27076 * 11 10 8 40 40 H 1.09000 * 109.68617 * 307.49929 * 14 12 11 41 41 H 1.09007 * 109.68132 * 68.01817 * 14 12 11 42 42 H 0.97000 * 119.99843 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.67908 * 69.18563 * 24 15 14 44 44 H 1.08997 * 109.68524 * 189.70688 * 24 15 14 45 45 H 1.09004 * 109.50635 * 172.22421 * 25 24 15 46 46 H 1.08997 * 109.50865 * 292.36986 * 25 24 15 47 47 H 1.09005 * 109.50293 * 62.28651 * 27 7 6 48 48 H 1.08994 * 109.50392 * 182.40163 * 27 7 6 49 49 H 1.08993 * 109.46460 * 294.18107 * 28 4 3 50 50 H 1.08997 * 109.45887 * 54.14818 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1360 -0.5478 -1.2716 5 6 4.5845 -0.7840 -1.2195 6 6 5.0822 -1.2155 -2.6009 7 6 4.3528 -2.4934 -3.0246 8 6 4.7950 -2.8900 -4.4096 9 8 5.6135 -2.2179 -5.0006 10 7 4.2811 -3.9917 -4.9915 11 6 4.7065 -4.3740 -6.3402 12 6 3.9725 -5.6474 -6.7648 13 1 4.1357 -6.4270 -6.0207 14 6 4.5052 -6.1167 -8.1234 15 7 3.6611 -7.2259 -8.5950 16 6 4.2166 -8.4032 -9.0200 17 1 5.1814 -8.7114 -8.6448 18 6 3.5398 -9.2004 -9.9328 19 7 2.5492 -8.6973 -10.6385 20 14 4.0350 -10.9872 -10.1597 21 1 3.2619 -11.8383 -9.2198 22 1 3.7501 -11.4064 -11.5555 23 1 5.4864 -11.1375 -9.8842 24 6 2.2023 -7.0330 -8.5959 25 6 1.7818 -6.5190 -7.2142 26 8 2.5729 -5.3777 -6.8746 27 6 2.8436 -2.2344 -3.0239 28 6 2.4108 -1.7733 -1.6303 29 1 -1.0499 0.0001 -0.0003 30 1 3.0097 -0.6127 0.8245 31 1 3.0089 1.0216 0.1192 32 1 4.7985 -1.5694 -0.4946 33 1 5.0915 0.1336 -0.9211 34 1 6.1546 -1.4058 -2.5582 35 1 4.8814 -0.4250 -3.3240 36 1 4.5860 -3.2952 -2.3241 37 1 3.6268 -4.5295 -4.5187 38 1 4.4713 -3.5695 -7.0370 39 1 5.7813 -4.5555 -6.3444 40 1 4.4639 -5.2945 -8.8379 41 1 5.5348 -6.4582 -8.0159 42 1 2.0765 -9.2542 -11.2766 43 1 1.9291 -6.3030 -9.3579 44 1 1.7066 -7.9816 -8.8018 45 1 0.7285 -6.2388 -7.2352 46 1 1.9362 -7.3021 -6.4720 47 1 2.6070 -1.4597 -3.7534 48 1 2.3167 -3.1525 -3.2835 49 1 2.6351 -2.5540 -0.9036 50 1 1.3391 -1.5743 -1.6302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035613428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:05 Heat of formation + Delta-G solvation = -24.021150 kcal Electronic energy + Delta-G solvation = -28980.002356 eV Core-core repulsion = 25008.340081 eV Total energy + Delta-G solvation = -3971.662275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.31335 -40.19156 -39.39234 -36.52677 -35.78055 -35.56059 -33.45681 -33.13564 -32.22093 -31.68618 -29.37891 -28.43815 -26.99931 -25.06849 -24.61654 -24.13005 -23.25839 -21.87443 -21.30970 -20.52897 -18.98228 -18.91494 -18.24624 -17.54111 -17.22862 -16.98871 -16.70014 -16.21959 -16.13955 -15.90638 -15.66392 -15.54102 -15.39610 -15.04739 -14.74757 -14.59573 -14.56643 -14.23602 -13.96133 -13.73118 -13.46834 -13.23123 -13.01681 -12.98187 -12.69785 -12.54025 -12.44549 -12.17205 -12.16084 -12.08095 -11.88606 -11.74229 -11.56097 -11.34996 -11.28107 -11.05113 -10.82918 -10.74531 -10.54056 -10.09771 -9.26954 -8.77180 -7.92386 -5.40116 1.46728 1.47295 1.56765 1.64183 1.76704 1.93267 2.16629 2.47651 2.77259 3.08823 3.22416 3.47175 3.48095 3.60709 3.78665 3.85943 3.97906 4.05656 4.20583 4.24106 4.28500 4.38972 4.42946 4.47746 4.51870 4.55320 4.60051 4.61315 4.70553 4.71086 4.76141 4.78611 4.88961 4.91210 4.94782 5.04904 5.11354 5.13740 5.19634 5.23269 5.34777 5.44299 5.54311 5.60145 6.03625 6.11231 6.24612 6.32023 6.56243 6.70985 7.04769 7.25332 7.72748 8.26399 9.13614 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.002039 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.609001 B =13728.214974 C =14494.644216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.552 5.552 5 C 0.062 3.938 6 C -0.093 4.093 7 C -0.099 4.099 8 C 0.515 3.485 9 O -0.585 6.585 10 N -0.712 5.712 11 C 0.140 3.860 12 C 0.081 3.919 13 H 0.071 0.929 14 C 0.116 3.884 15 N -0.613 5.613 16 C -0.266 4.266 17 H 0.073 0.927 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.142 3.858 25 C 0.055 3.945 26 O -0.389 6.389 27 C -0.102 4.102 28 C 0.060 3.940 29 H 0.240 0.760 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.413 0.587 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.252 0.748 43 H -0.003 1.003 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 13.792 25.122 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.215 4.215 3 C 0.036 3.964 4 N -0.278 5.278 5 C -0.065 4.065 6 C -0.131 4.131 7 C -0.120 4.120 8 C 0.303 3.697 9 O -0.465 6.465 10 N -0.363 5.363 11 C 0.016 3.984 12 C 0.021 3.979 13 H 0.089 0.911 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.395 4.395 17 H 0.091 0.909 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.801 3.199 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.193 1.193 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 C -0.140 4.140 28 C -0.067 4.067 29 H 0.257 0.743 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.250 0.750 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.104 0.896 49 H 0.067 0.933 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.718 14.697 24.227 28.345 hybrid contribution -0.207 -1.948 -0.406 2.001 sum -0.926 12.749 23.820 27.033 Atomic orbital electron populations 1.25678 0.96877 0.99982 0.98815 1.23294 0.95128 1.01387 1.01720 1.19155 0.84315 1.02109 0.90819 1.62031 1.04809 1.29935 1.30982 1.22121 0.86556 1.01757 0.96073 1.21351 0.99508 0.95494 0.96782 1.21411 0.97495 1.00630 0.92466 1.21180 0.80208 0.79437 0.88911 1.90682 1.35548 1.53702 1.66576 1.45879 1.45448 1.27988 1.17009 1.21151 0.98431 0.95032 0.83827 1.22628 0.82158 0.96014 0.97084 0.91117 1.21607 0.95428 0.90392 0.93628 1.44353 1.01613 1.12359 1.75393 1.19564 1.04661 0.96366 1.18957 0.90902 1.25858 0.99642 1.03309 0.95924 1.70198 1.26187 1.35957 1.25861 0.85181 0.78365 0.79960 0.76410 1.20798 1.22335 1.19263 1.21325 0.84408 0.99180 0.93438 1.23151 0.95237 0.87955 0.95950 1.87807 1.17557 1.34842 1.90632 1.21543 0.92727 1.02033 0.97710 1.22075 0.98747 0.90425 0.95479 0.74317 0.91066 0.87449 0.92862 0.88824 0.90654 0.92569 0.86288 0.75019 0.92421 0.89539 0.96669 0.90960 0.93932 0.98467 0.91385 0.87344 0.92940 0.92495 0.89559 0.93339 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 19.02 74.32 1.41 -1.13 16 2 C -0.21 -3.20 11.51 31.13 0.36 -2.84 16 3 C 0.16 1.92 5.77 84.50 0.49 2.41 16 4 N -0.55 -8.03 4.79 -907.47 -4.35 -12.38 16 5 C 0.06 0.76 5.42 86.33 0.47 1.22 16 6 C -0.09 -1.61 4.68 30.65 0.14 -1.47 16 7 C -0.10 -1.69 2.59 -11.46 -0.03 -1.72 16 8 C 0.51 12.88 7.16 87.66 0.63 13.50 16 9 O -0.58 -19.62 15.98 -3.05 -0.05 -19.67 16 10 N -0.71 -16.90 5.41 -463.08 -2.51 -19.40 16 11 C 0.14 4.04 5.34 86.38 0.46 4.50 16 12 C 0.08 2.64 2.81 30.69 0.09 2.73 16 13 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 14 C 0.12 4.77 6.02 86.35 0.52 5.29 16 15 N -0.61 -30.54 3.05 -697.53 -2.13 -32.67 16 16 C -0.27 -14.34 9.65 84.03 0.81 -13.53 16 17 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 18 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 19 N -0.94 -54.82 11.14 21.65 0.24 -54.58 16 20 Si 0.97 43.92 29.59 68.60 2.03 45.95 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 C 0.14 6.79 5.45 86.35 0.47 7.26 16 25 C 0.05 1.97 6.98 72.08 0.50 2.48 16 26 O -0.39 -13.61 10.33 -148.98 -1.54 -15.15 16 27 C -0.10 -1.65 5.26 30.65 0.16 -1.49 16 28 C 0.06 0.87 5.08 86.32 0.44 1.30 16 29 H 0.24 1.54 7.80 -4.42 -0.03 1.51 16 30 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.26 8.04 -2.39 -0.02 1.24 16 36 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.41 7.98 7.96 -92.71 -0.74 7.24 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 2.80 7.96 -2.38 -0.02 2.78 16 42 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.07 3.60 6.14 -2.39 -0.01 3.58 16 45 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.09 1.21 7.66 -2.39 -0.02 1.19 16 49 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.08 1.21 6.36 -2.39 -0.02 1.20 16 Total: -1.00 -70.89 399.45 -0.78 -71.67 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.18 Total: 20.14 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.34 Total: 16.08 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -8.74 Total: -119.04 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.59 Total: -34.81 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.89 -0.78 -71.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035613428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.650 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds