Wall clock time and date at job start Tue Mar 31 2020 19:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 N 1.46506 * 109.46895 * 119.99810 * 2 1 3 5 5 C 1.46762 * 124.34608 * 120.00364 * 4 2 1 6 6 C 1.54479 * 105.47174 * 162.96396 * 5 4 2 7 7 H 1.08996 * 110.97408 * 143.57131 * 6 5 4 8 8 C 1.50703 * 110.96626 * 267.29469 * 6 5 4 9 9 O 1.21277 * 120.00019 * 356.90917 * 8 6 5 10 10 N 1.34778 * 119.99681 * 176.90906 * 8 6 5 11 11 C 1.46769 * 125.34195 * 0.02562 * 10 8 6 12 12 C 1.53971 * 106.62930 * 198.51667 * 11 10 8 13 13 H 1.09002 * 113.01755 * 94.27635 * 12 11 10 14 14 C 1.53926 * 109.91794 * 221.55598 * 12 11 10 15 15 N 1.47612 * 106.28249 * 80.85308 * 14 12 11 16 16 C 1.36944 * 125.44040 * 198.70112 * 15 14 12 17 17 H 1.08003 * 119.99777 * 180.81896 * 16 15 14 18 18 C 1.38811 * 119.99912 * 0.81784 * 16 15 14 19 19 N 1.31615 * 120.00295 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99880 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47389 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47392 * 120.00057 * 20 18 16 23 23 H 1.48508 * 109.47235 * 240.00324 * 20 18 16 24 24 C 1.46641 * 109.22675 * 19.40962 * 15 14 12 25 25 C 1.53686 * 108.00986 * 358.47507 * 24 15 14 26 26 H 1.09004 * 112.55893 * 105.90407 * 25 24 15 27 27 C 1.46672 * 125.33749 * 179.97438 * 10 8 6 28 28 C 1.54626 * 101.79892 * 25.43238 * 6 5 4 29 29 C 1.34416 * 124.35150 * 299.97816 * 4 2 1 30 30 O 1.21280 * 124.93971 * 0.45714 * 29 4 2 31 31 H 1.08996 * 109.47489 * 300.00198 * 1 2 3 32 32 H 1.09002 * 109.46974 * 60.00089 * 1 2 3 33 33 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47489 * 239.99802 * 2 1 3 35 35 H 1.09005 * 109.47291 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47125 * 299.99818 * 3 2 1 37 37 H 1.09009 * 109.47214 * 59.99806 * 3 2 1 38 38 H 1.08996 * 110.25160 * 43.96030 * 5 4 2 39 39 H 1.09001 * 110.31559 * 281.99833 * 5 4 2 40 40 H 1.08994 * 110.03381 * 79.22230 * 11 10 8 41 41 H 1.09003 * 110.02702 * 317.80043 * 11 10 8 42 42 H 1.09000 * 110.00881 * 201.20371 * 14 12 11 43 43 H 1.08999 * 110.00929 * 322.56835 * 14 12 11 44 44 H 0.96996 * 120.00322 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.76021 * 238.83636 * 24 15 14 46 46 H 1.09004 * 109.76339 * 118.12210 * 24 15 14 47 47 H 1.09005 * 109.77107 * 59.83321 * 27 10 8 48 48 H 1.09002 * 109.77209 * 299.07849 * 27 10 8 49 49 H 1.08998 * 110.48867 * 93.86714 * 28 6 5 50 50 H 1.09007 * 110.48820 * 216.50949 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8656 -1.8887 1.1728 6 6 3.4727 -1.9919 2.5895 7 1 3.5573 -3.0324 2.9029 8 6 4.8107 -1.3016 2.6544 9 8 5.2902 -0.8131 1.6533 10 7 5.4745 -1.2272 3.8250 11 6 5.0058 -1.7758 5.1031 12 6 5.8124 -1.0693 6.2081 13 1 5.3018 -0.1976 6.6174 14 6 6.2259 -2.0862 7.2871 15 7 7.4175 -2.7830 6.7642 16 6 7.8945 -3.9859 7.2125 17 1 8.7851 -4.4110 6.7737 18 6 7.2335 -4.6586 8.2310 19 7 6.1479 -4.1407 8.7655 20 14 7.8846 -6.2990 8.8430 21 1 9.1091 -6.6597 8.0843 22 1 8.2111 -6.1941 10.2878 23 1 6.8515 -7.3471 8.6438 24 6 8.0206 -1.9754 5.6992 25 6 7.1543 -0.7207 5.5059 26 1 7.6215 0.1766 5.9117 27 6 6.7790 -0.5861 4.0213 28 6 2.4212 -1.2418 3.4395 29 6 1.7483 -0.3080 2.4562 30 8 1.0645 0.6461 2.7610 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 3.6562 -1.7773 0.4308 39 1 2.2657 -2.7722 0.9542 40 1 5.1873 -2.8500 5.1373 41 1 3.9424 -1.5722 5.2292 42 1 6.4516 -1.5693 8.2199 43 1 5.4252 -2.8087 7.4451 44 1 5.6858 -4.6110 9.4769 45 1 8.0498 -2.5494 4.7730 46 1 9.0317 -1.6848 5.9846 47 1 6.7161 0.4681 3.7513 48 1 7.5294 -1.0807 3.4046 49 1 1.6979 -1.9422 3.8570 50 1 2.9067 -0.6747 4.2338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048847679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:39 Heat of formation + Delta-G solvation = -51.866643 kcal Electronic energy + Delta-G solvation = -30607.454578 eV Core-core repulsion = 26634.584832 eV Total energy + Delta-G solvation = -3972.869746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20024 -41.06633 -39.54326 -37.38398 -36.55926 -35.94855 -34.10198 -31.96281 -31.56929 -30.74301 -28.74693 -28.13416 -27.38990 -27.02178 -25.23507 -23.49837 -23.22449 -21.80590 -20.82030 -20.33161 -19.97564 -18.90353 -18.33208 -17.67598 -17.55155 -16.88237 -16.65829 -16.42584 -15.93855 -15.83811 -15.48407 -15.21633 -14.72608 -14.60834 -14.51226 -14.42842 -14.41143 -13.75002 -13.74877 -13.54651 -13.46130 -13.23275 -13.14242 -13.06488 -12.83293 -12.75032 -12.73992 -12.54768 -12.51320 -12.22861 -12.09486 -11.95853 -11.85463 -11.73154 -11.49111 -11.36127 -10.91717 -10.67514 -10.65309 -9.71053 -9.65978 -8.84017 -7.77128 -5.17261 1.48974 1.49296 1.50894 1.55106 1.59824 1.91821 2.03865 2.51948 3.21013 3.30442 3.30769 3.35581 3.55401 3.65478 3.80497 3.80961 3.95694 3.99021 4.09723 4.24381 4.27608 4.29790 4.35956 4.47281 4.53862 4.58646 4.63362 4.69380 4.70097 4.78902 4.79483 4.84856 4.86359 4.89889 4.90862 4.93719 5.05253 5.18930 5.20012 5.23559 5.29569 5.33554 5.51409 5.62735 5.67743 5.85913 6.14244 6.32259 6.48138 7.04561 7.15132 7.15460 7.81981 8.44035 9.27071 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002833 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.013083 B = 9880.283228 C =10282.249682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 C -0.162 4.162 4 N -0.610 5.610 5 C 0.118 3.882 6 C -0.116 4.116 7 H 0.153 0.847 8 C 0.530 3.470 9 O -0.573 6.573 10 N -0.607 5.607 11 C 0.115 3.885 12 C -0.113 4.113 13 H 0.112 0.888 14 C 0.176 3.824 15 N -0.620 5.620 16 C -0.237 4.237 17 H 0.075 0.925 18 C -0.058 4.058 19 N -0.943 5.943 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.289 1.289 24 C 0.140 3.860 25 C -0.097 4.097 26 H 0.116 0.884 27 C 0.124 3.876 28 C -0.146 4.146 29 C 0.509 3.491 30 O -0.571 6.571 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.060 0.940 41 H 0.099 0.901 42 H -0.008 1.008 43 H 0.073 0.927 44 H 0.248 0.752 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.145 0.855 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 5.410 -16.213 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 C -0.220 4.220 4 N -0.343 5.343 5 C -0.004 4.004 6 C -0.137 4.137 7 H 0.170 0.830 8 C 0.320 3.680 9 O -0.453 6.453 10 N -0.339 5.339 11 C -0.007 4.007 12 C -0.133 4.133 13 H 0.130 0.870 14 C 0.051 3.949 15 N -0.347 5.347 16 C -0.366 4.366 17 H 0.093 0.907 18 C -0.251 4.251 19 N -0.592 5.592 20 Si 0.802 3.198 21 H -0.197 1.197 22 H -0.223 1.223 23 H -0.216 1.216 24 C 0.015 3.985 25 C -0.116 4.116 26 H 0.134 0.866 27 C 0.001 3.999 28 C -0.186 4.186 29 C 0.298 3.702 30 O -0.451 6.451 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.010 0.990 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.163 0.837 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.686 6.021 -16.622 20.159 hybrid contribution 0.826 -0.757 0.939 1.462 sum -8.860 5.264 -15.684 18.767 Atomic orbital electron populations 1.22107 0.94022 1.02718 1.02785 1.21136 0.94807 0.92749 0.86846 1.22120 1.00599 0.96598 1.02705 1.48546 1.50561 1.29222 1.06015 1.22182 0.94249 0.88135 0.95854 1.22338 0.90294 1.03096 0.97954 0.82970 1.20451 0.86897 0.79521 0.81178 1.90665 1.70156 1.49478 1.35032 1.48332 1.20619 1.56026 1.08910 1.22147 0.99562 0.97968 0.81010 1.23120 0.95214 0.99070 0.95904 0.87021 1.21313 0.90331 0.92129 0.91104 1.44711 1.29789 1.20093 1.40072 1.19376 1.07636 0.95165 1.14426 0.90691 1.25471 0.98347 1.02059 0.99250 1.70043 1.20491 1.39567 1.29124 0.85098 0.77561 0.79785 0.77388 1.19697 1.22252 1.21623 1.21336 0.95212 0.90874 0.91102 1.22723 0.96294 0.98694 0.93876 0.86600 1.21716 0.84769 0.97871 0.95545 1.22557 0.98780 0.99558 0.97683 1.21188 0.79759 0.84433 0.84810 1.90667 1.41637 1.30544 1.82238 0.93835 0.89603 0.91564 0.86970 0.93707 0.89344 0.93974 0.89326 0.86553 0.92120 0.88344 0.98984 0.90870 0.94240 0.96057 0.96126 0.90949 0.91872 0.83671 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.20 71.98 0.66 -1.90 16 2 C 0.15 2.59 3.47 44.99 0.16 2.75 16 3 C -0.16 -3.34 9.20 71.98 0.66 -2.68 16 4 N -0.61 -12.45 2.83 -793.92 -2.25 -14.70 16 5 C 0.12 1.91 6.66 86.83 0.58 2.49 16 6 C -0.12 -2.14 2.96 -10.48 -0.03 -2.17 16 7 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 8 C 0.53 14.28 7.17 87.66 0.63 14.91 16 9 O -0.57 -18.86 15.82 -3.02 -0.05 -18.91 16 10 N -0.61 -16.88 3.28 -817.40 -2.68 -19.56 16 11 C 0.12 3.25 5.68 86.66 0.49 3.74 16 12 C -0.11 -3.58 4.12 -9.32 -0.04 -3.62 16 13 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 14 C 0.18 7.74 4.94 86.48 0.43 8.17 16 15 N -0.62 -29.57 3.39 -695.65 -2.36 -31.93 16 16 C -0.24 -12.60 10.25 84.03 0.86 -11.74 16 17 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.06 -3.11 5.49 84.86 0.47 -2.64 16 19 N -0.94 -52.39 10.15 21.65 0.22 -52.17 16 20 Si 0.97 43.71 29.55 68.60 2.03 45.74 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 C 0.14 5.39 6.60 86.58 0.57 5.97 16 25 C -0.10 -2.92 4.01 -9.49 -0.04 -2.96 16 26 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 27 C 0.12 3.50 6.23 86.59 0.54 4.04 16 28 C -0.15 -2.79 5.53 30.62 0.17 -2.62 16 29 C 0.51 12.77 7.41 87.93 0.65 13.42 16 30 O -0.57 -18.61 15.12 -3.03 -0.05 -18.66 16 31 H 0.04 0.97 6.77 -2.39 -0.02 0.96 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 1.45 8.07 -2.39 -0.02 1.43 16 35 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 1.11 6.80 -2.38 -0.02 1.09 16 38 H 0.09 1.65 6.98 -2.39 -0.02 1.63 16 39 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 2.04 7.75 -2.39 -0.02 2.02 16 41 H 0.10 2.25 5.18 -2.39 -0.01 2.24 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 43 H 0.07 3.62 5.98 -2.39 -0.01 3.60 16 44 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 45 H 0.02 0.84 7.29 -2.39 -0.02 0.83 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.06 1.87 7.43 -2.39 -0.02 1.85 16 49 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.10 2.17 5.79 -2.38 -0.01 2.16 16 Total: -1.00 -71.43 382.26 2.56 -68.87 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.93 Total: 16.15 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: 6.76 Total: 25.16 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -7.06 Total: -118.35 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.09 Total: -37.57 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -71.43 2.56 -68.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048847679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.006 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds