Wall clock time and date at job start Tue Mar 31 2020 18:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47126 * 232.39264 * 3 2 1 5 5 C 1.46846 * 110.99980 * 190.00226 * 4 3 2 6 6 C 1.53035 * 109.52100 * 185.84108 * 5 4 3 7 7 C 1.53111 * 109.28200 * 300.82100 * 6 5 4 8 8 C 1.50697 * 109.52747 * 177.55845 * 7 6 5 9 9 O 1.21278 * 119.99640 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00371 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00305 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47571 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.70662 * 56.65899 * 12 11 10 14 14 C 1.53716 * 109.74939 * 177.43165 * 12 11 10 15 15 O 1.42957 * 109.14661 * 172.16182 * 14 12 11 16 16 C 1.42963 * 114.16784 * 297.29017 * 15 14 12 17 17 C 1.53294 * 109.22223 * 62.58109 * 16 15 14 18 18 N 1.47144 * 108.38564 * 307.69668 * 17 16 15 19 19 C 1.36942 * 120.98318 * 230.51699 * 18 17 16 20 20 H 1.08001 * 119.99874 * 165.64166 * 19 18 17 21 21 C 1.38815 * 119.99760 * 345.63043 * 19 18 17 22 22 N 1.31622 * 119.99495 * 139.70558 * 21 19 18 23 23 Si 1.86803 * 120.00146 * 319.71108 * 21 19 18 24 24 H 1.48494 * 109.46746 * 275.60458 * 23 21 19 25 25 H 1.48497 * 109.46882 * 35.60480 * 23 21 19 26 26 H 1.48498 * 109.46906 * 155.60527 * 23 21 19 27 27 C 1.53124 * 109.15917 * 57.65598 * 7 6 5 28 28 C 1.46842 * 110.99932 * 314.21827 * 4 3 2 29 29 H 4.40885 * 5.52296 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47102 * 112.39936 * 3 2 1 31 31 H 1.08993 * 109.47243 * 352.39876 * 3 2 1 32 32 H 1.09003 * 109.46404 * 65.82526 * 5 4 3 33 33 H 1.09004 * 109.45424 * 305.85477 * 5 4 3 34 34 H 1.08998 * 109.49998 * 180.87780 * 6 5 4 35 35 H 1.09004 * 109.53372 * 60.78685 * 6 5 4 36 36 H 1.09006 * 109.52375 * 297.69236 * 7 6 5 37 37 H 0.97004 * 120.00208 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.47151 * 60.00048 * 11 10 8 39 39 H 1.09009 * 109.46950 * 300.00423 * 11 10 8 40 40 H 1.09005 * 109.65561 * 52.19510 * 14 12 11 41 41 H 1.09002 * 109.44000 * 292.00354 * 14 12 11 42 42 H 1.09003 * 109.51241 * 302.65072 * 16 15 14 43 43 H 1.09000 * 109.55540 * 182.53086 * 16 15 14 44 44 H 1.09001 * 109.67885 * 187.97219 * 17 16 15 45 45 H 1.08994 * 109.71072 * 67.44372 * 17 16 15 46 46 H 0.96998 * 119.99542 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.50717 * 62.28547 * 27 7 6 48 48 H 1.09001 * 109.50365 * 182.41000 * 27 7 6 49 49 H 1.09004 * 109.46015 * 294.16711 * 28 4 3 50 50 H 1.08991 * 109.46890 * 54.15021 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1353 0.8461 1.0972 5 6 4.5835 1.0635 0.9885 6 6 5.0806 1.8225 2.2209 7 6 4.3500 3.1646 2.3169 8 6 4.7916 3.8907 3.5614 9 8 5.6106 3.3856 4.2996 10 7 4.2773 5.1016 3.8535 11 6 4.7070 5.8077 5.0630 12 6 3.9762 7.1484 5.1579 13 1 2.8991 6.9819 5.1422 14 6 4.3742 7.8662 6.4576 15 8 3.8315 9.1887 6.4480 16 6 4.3303 10.0184 5.3960 17 6 3.9348 9.4123 4.0446 18 7 4.3618 8.0043 4.0247 19 6 5.0918 7.5038 2.9797 20 1 5.5925 6.5519 3.0778 21 6 5.1878 8.2198 1.7943 22 7 6.3345 8.2759 1.1505 23 14 3.6899 9.1038 1.1130 24 1 2.8713 8.1516 0.3204 25 1 2.8783 9.6393 2.2354 26 1 4.1295 10.2232 0.2418 27 6 2.8411 2.9119 2.3802 28 6 2.4088 2.1214 1.1432 29 1 -1.0501 -0.0002 0.0000 30 1 3.0092 0.3924 -0.9502 31 1 3.0098 -1.0177 0.1359 32 1 4.7970 1.6463 0.0924 33 1 5.0914 0.1011 0.9253 34 1 6.1529 1.9974 2.1324 35 1 4.8805 1.2343 3.1165 36 1 4.5825 3.7695 1.4403 37 1 3.6225 5.5058 3.2629 38 1 5.7821 5.9818 5.0194 39 1 4.4721 5.2033 5.9393 40 1 5.4606 7.9189 6.5294 41 1 3.9784 7.3163 7.3115 42 1 5.4165 10.0790 5.4640 43 1 3.9036 11.0174 5.4858 44 1 4.4280 9.9570 3.2396 45 1 2.8537 9.4699 3.9182 46 1 6.4015 8.7759 0.3221 47 1 2.6051 2.3406 3.2780 48 1 2.3132 3.8653 2.4056 49 1 2.6325 2.6993 0.2464 50 1 1.3374 1.9275 1.1924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051254591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:09 Heat of formation + Delta-G solvation = 23.315871 kcal Electronic energy + Delta-G solvation = -30281.540833 eV Core-core repulsion = 26311.931245 eV Total energy + Delta-G solvation = -3969.609588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.02339 -38.93484 -38.18275 -35.51070 -34.58380 -33.73881 -32.37885 -31.67740 -30.97190 -30.68665 -27.80546 -27.35333 -25.56314 -23.63399 -23.43673 -23.15878 -22.11762 -20.37213 -19.92565 -19.30834 -18.29850 -17.25173 -16.50862 -16.10364 -16.06052 -15.67115 -15.31778 -15.11524 -15.02277 -14.90510 -14.43296 -14.36405 -13.97376 -13.79645 -13.67262 -13.38335 -12.96739 -12.87498 -12.79896 -12.39448 -12.14399 -12.09250 -11.96829 -11.61236 -11.37002 -11.16516 -11.03341 -10.81142 -10.77069 -10.60227 -10.52845 -10.45192 -10.27527 -10.26260 -9.89351 -9.59723 -9.27005 -9.17894 -8.48967 -8.40744 -8.33962 -7.25486 -6.13582 -3.26413 2.48431 2.63167 3.16606 3.28728 3.40756 3.47976 3.70643 3.87057 4.13378 4.31261 4.45994 4.61531 4.72848 4.81585 4.96530 5.13894 5.14911 5.19046 5.27219 5.37002 5.39888 5.42025 5.55062 5.56897 5.65039 5.65619 5.69924 5.76711 5.80042 5.83279 5.93154 5.94017 5.96183 6.01530 6.11157 6.14004 6.23714 6.26331 6.42204 6.44403 6.60431 6.76879 6.83523 6.91706 7.03841 7.39075 7.61997 7.70483 8.11233 8.17103 8.76744 8.79515 9.60902 9.96231 10.97675 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003302 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.990477 B = 8478.838435 C = 9150.737951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.160 3.840 4 N -0.535 5.535 5 C 0.055 3.945 6 C -0.092 4.092 7 C -0.109 4.109 8 C 0.519 3.481 9 O -0.557 6.557 10 N -0.700 5.700 11 C 0.134 3.866 12 C 0.130 3.870 13 H 0.044 0.956 14 C 0.055 3.945 15 O -0.389 6.389 16 C 0.041 3.959 17 C 0.113 3.887 18 N -0.600 5.600 19 C -0.285 4.285 20 H 0.105 0.895 21 C 0.040 3.960 22 N -0.870 5.870 23 Si 0.810 3.190 24 H -0.294 1.294 25 H -0.248 1.248 26 H -0.297 1.297 27 C -0.105 4.105 28 C 0.054 3.946 29 H 0.217 0.783 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.409 0.591 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.262 0.738 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.038 0.962 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 -11.026 0.730 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.181 4.181 3 C 0.034 3.966 4 N -0.260 5.260 5 C -0.072 4.072 6 C -0.130 4.130 7 C -0.131 4.131 8 C 0.305 3.695 9 O -0.436 6.436 10 N -0.351 5.351 11 C 0.009 3.991 12 C 0.023 3.977 13 H 0.062 0.938 14 C -0.024 4.024 15 O -0.308 6.308 16 C -0.037 4.037 17 C -0.013 4.013 18 N -0.326 5.326 19 C -0.411 4.411 20 H 0.122 0.878 21 C -0.162 4.162 22 N -0.510 5.510 23 Si 0.637 3.363 24 H -0.222 1.222 25 H -0.173 1.173 26 H -0.223 1.223 27 C -0.143 4.143 28 C -0.073 4.073 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.056 0.944 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.648 -11.501 1.688 13.914 hybrid contribution -1.027 1.230 -2.120 2.657 sum -8.674 -10.271 -0.433 13.451 Atomic orbital electron populations 1.24916 0.95917 1.00646 1.00320 1.22842 0.94280 1.00458 1.00530 1.19099 0.84737 0.99285 0.93483 1.62099 1.04499 1.16159 1.43236 1.22174 0.86782 1.00367 0.97878 1.21354 0.99692 0.93923 0.98074 1.21368 0.96618 0.97534 0.97552 1.20359 0.81167 0.81236 0.86728 1.90640 1.33953 1.67617 1.51418 1.45960 1.44963 1.18026 1.26170 1.21185 1.00317 0.90989 0.86574 1.21476 0.96945 0.90043 0.89205 0.93835 1.22981 0.98291 0.83792 0.97352 1.87813 1.68431 1.23279 1.51264 1.23180 0.98566 0.93290 0.88620 1.22111 0.97586 0.85991 0.95578 1.44505 1.63579 1.04337 1.20227 1.19076 1.23256 1.07820 0.90961 0.87797 1.24902 0.96395 0.96952 0.97942 1.70215 1.22158 1.40565 1.18068 0.88291 0.87954 0.79378 0.80670 1.22175 1.17287 1.22327 1.21560 0.93793 1.00147 0.98791 1.22157 0.98738 0.88996 0.97432 0.76576 0.92423 0.88349 0.94339 0.90185 0.90493 0.90297 0.88496 0.75505 0.90760 0.92126 0.92817 0.89495 0.93049 0.89845 0.90675 0.94588 0.92831 0.90612 0.90789 0.94423 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 19.01 29.55 0.56 -1.28 16 2 C -0.18 -1.89 11.51 -37.12 -0.43 -2.32 16 3 C 0.16 1.54 5.77 -6.61 -0.04 1.50 16 4 N -0.53 -6.01 4.79 -238.18 -1.14 -7.15 16 5 C 0.06 0.61 5.42 -3.84 -0.02 0.58 16 6 C -0.09 -1.23 4.68 -26.66 -0.12 -1.35 16 7 C -0.11 -1.59 2.59 -91.65 -0.24 -1.83 16 8 C 0.52 9.22 7.15 -10.99 -0.08 9.15 16 9 O -0.56 -11.52 15.98 5.56 0.09 -11.44 16 10 N -0.70 -12.34 3.51 -60.30 -0.21 -12.55 16 11 C 0.13 2.36 4.42 -4.04 -0.02 2.35 16 12 C 0.13 2.34 3.19 -67.20 -0.21 2.12 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 14 C 0.05 0.90 6.31 37.53 0.24 1.14 16 15 O -0.39 -6.97 10.74 -35.23 -0.38 -7.34 16 16 C 0.04 0.74 6.98 37.31 0.26 1.00 16 17 C 0.11 2.32 4.41 -3.54 -0.02 2.30 16 18 N -0.60 -12.90 2.94 -164.06 -0.48 -13.38 16 19 C -0.29 -7.04 8.09 -15.06 -0.12 -7.16 16 20 H 0.10 2.72 5.30 -52.49 -0.28 2.45 16 21 C 0.04 1.04 4.90 -17.43 -0.09 0.96 16 22 N -0.87 -24.82 13.97 55.49 0.78 -24.05 16 23 Si 0.81 19.18 26.37 -169.99 -4.48 14.70 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.25 -5.47 4.33 56.52 0.24 -5.23 16 26 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 27 C -0.10 -1.32 5.26 -26.65 -0.14 -1.46 16 28 C 0.05 0.64 5.08 -3.83 -0.02 0.62 16 29 H 0.22 1.27 7.80 -54.08 -0.42 0.85 16 30 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.41 7.19 7.09 -40.82 -0.29 6.90 16 38 H 0.07 1.51 7.54 -51.93 -0.39 1.12 16 39 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.08 1.66 4.88 -51.93 -0.25 1.41 16 45 H 0.04 0.75 6.82 -51.93 -0.35 0.39 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 49 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.93 6.36 -51.93 -0.33 0.60 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -30.79 385.32 -8.85 -39.64 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.34 Total: 9.47 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -0.48 Total: 6.30 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -1.06 Total: -57.14 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.29 Total: -18.78 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.48 Total: 14.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.79 -8.85 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051254591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.951 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds