Wall clock time and date at job start Tue Mar 31 2020 18:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47126 * 232.39264 * 3 2 1 5 5 C 1.46846 * 110.99980 * 190.00226 * 4 3 2 6 6 C 1.53035 * 109.52100 * 185.84108 * 5 4 3 7 7 C 1.53111 * 109.28200 * 300.82100 * 6 5 4 8 8 C 1.50697 * 109.52747 * 177.55845 * 7 6 5 9 9 O 1.21278 * 119.99640 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00371 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00305 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47571 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.70662 * 56.65899 * 12 11 10 14 14 C 1.53716 * 109.74939 * 177.43165 * 12 11 10 15 15 O 1.42957 * 109.14661 * 172.16182 * 14 12 11 16 16 C 1.42963 * 114.16784 * 297.29017 * 15 14 12 17 17 C 1.53294 * 109.22223 * 62.58109 * 16 15 14 18 18 N 1.47144 * 108.38564 * 307.69668 * 17 16 15 19 19 C 1.36942 * 120.98318 * 230.51699 * 18 17 16 20 20 H 1.08001 * 119.99874 * 165.64166 * 19 18 17 21 21 C 1.38815 * 119.99760 * 345.63043 * 19 18 17 22 22 N 1.31622 * 119.99495 * 139.70558 * 21 19 18 23 23 Si 1.86803 * 120.00146 * 319.71108 * 21 19 18 24 24 H 1.48494 * 109.46746 * 275.60458 * 23 21 19 25 25 H 1.48497 * 109.46882 * 35.60480 * 23 21 19 26 26 H 1.48498 * 109.46906 * 155.60527 * 23 21 19 27 27 C 1.53124 * 109.15917 * 57.65598 * 7 6 5 28 28 C 1.46842 * 110.99932 * 314.21827 * 4 3 2 29 29 H 4.40885 * 5.52296 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47102 * 112.39936 * 3 2 1 31 31 H 1.08993 * 109.47243 * 352.39876 * 3 2 1 32 32 H 1.09003 * 109.46404 * 65.82526 * 5 4 3 33 33 H 1.09004 * 109.45424 * 305.85477 * 5 4 3 34 34 H 1.08998 * 109.49998 * 180.87780 * 6 5 4 35 35 H 1.09004 * 109.53372 * 60.78685 * 6 5 4 36 36 H 1.09006 * 109.52375 * 297.69236 * 7 6 5 37 37 H 0.97004 * 120.00208 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.47151 * 60.00048 * 11 10 8 39 39 H 1.09009 * 109.46950 * 300.00423 * 11 10 8 40 40 H 1.09005 * 109.65561 * 52.19510 * 14 12 11 41 41 H 1.09002 * 109.44000 * 292.00354 * 14 12 11 42 42 H 1.09003 * 109.51241 * 302.65072 * 16 15 14 43 43 H 1.09000 * 109.55540 * 182.53086 * 16 15 14 44 44 H 1.09001 * 109.67885 * 187.97219 * 17 16 15 45 45 H 1.08994 * 109.71072 * 67.44372 * 17 16 15 46 46 H 0.96998 * 119.99542 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.50717 * 62.28547 * 27 7 6 48 48 H 1.09001 * 109.50365 * 182.41000 * 27 7 6 49 49 H 1.09004 * 109.46015 * 294.16711 * 28 4 3 50 50 H 1.08991 * 109.46890 * 54.15021 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1353 0.8461 1.0972 5 6 4.5835 1.0635 0.9885 6 6 5.0806 1.8225 2.2209 7 6 4.3500 3.1646 2.3169 8 6 4.7916 3.8907 3.5614 9 8 5.6106 3.3856 4.2996 10 7 4.2773 5.1016 3.8535 11 6 4.7070 5.8077 5.0630 12 6 3.9762 7.1484 5.1579 13 1 2.8991 6.9819 5.1422 14 6 4.3742 7.8662 6.4576 15 8 3.8315 9.1887 6.4480 16 6 4.3303 10.0184 5.3960 17 6 3.9348 9.4123 4.0446 18 7 4.3618 8.0043 4.0247 19 6 5.0918 7.5038 2.9797 20 1 5.5925 6.5519 3.0778 21 6 5.1878 8.2198 1.7943 22 7 6.3345 8.2759 1.1505 23 14 3.6899 9.1038 1.1130 24 1 2.8713 8.1516 0.3204 25 1 2.8783 9.6393 2.2354 26 1 4.1295 10.2232 0.2418 27 6 2.8411 2.9119 2.3802 28 6 2.4088 2.1214 1.1432 29 1 -1.0501 -0.0002 0.0000 30 1 3.0092 0.3924 -0.9502 31 1 3.0098 -1.0177 0.1359 32 1 4.7970 1.6463 0.0924 33 1 5.0914 0.1011 0.9253 34 1 6.1529 1.9974 2.1324 35 1 4.8805 1.2343 3.1165 36 1 4.5825 3.7695 1.4403 37 1 3.6225 5.5058 3.2629 38 1 5.7821 5.9818 5.0194 39 1 4.4721 5.2033 5.9393 40 1 5.4606 7.9189 6.5294 41 1 3.9784 7.3163 7.3115 42 1 5.4165 10.0790 5.4640 43 1 3.9036 11.0174 5.4858 44 1 4.4280 9.9570 3.2396 45 1 2.8537 9.4699 3.9182 46 1 6.4015 8.7759 0.3221 47 1 2.6051 2.3406 3.2780 48 1 2.3132 3.8653 2.4056 49 1 2.6325 2.6993 0.2464 50 1 1.3374 1.9275 1.1924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051254591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:08 Heat of formation + Delta-G solvation = 1.669394 kcal Electronic energy + Delta-G solvation = -30282.479495 eV Core-core repulsion = 26311.931245 eV Total energy + Delta-G solvation = -3970.548249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.32817 -40.29901 -39.39794 -37.03289 -35.56131 -35.39092 -33.63852 -33.16295 -32.37710 -31.72674 -29.26587 -28.55507 -26.87889 -25.26110 -24.67584 -24.17099 -23.55533 -21.65955 -21.43603 -20.58312 -19.01082 -18.84696 -17.99740 -17.58080 -17.42576 -16.90220 -16.77003 -16.39137 -16.15823 -15.99691 -15.86876 -15.65309 -15.54184 -15.11655 -14.82106 -14.60755 -14.33550 -14.22338 -13.99569 -13.81251 -13.72127 -13.50122 -13.16299 -12.99105 -12.76551 -12.46287 -12.41940 -12.21150 -12.17436 -12.02378 -11.77319 -11.59657 -11.39291 -11.30912 -11.21907 -11.07370 -11.05809 -10.65519 -10.23289 -9.88822 -9.34395 -9.05814 -8.15095 -5.24075 1.37814 1.51301 1.51992 1.72058 1.74837 1.91947 2.31586 2.50979 2.81632 2.99856 3.04258 3.29731 3.45171 3.63118 3.77191 3.83540 3.95369 4.12341 4.19456 4.21999 4.28591 4.35257 4.36539 4.41396 4.45142 4.52979 4.53202 4.56203 4.62174 4.67612 4.71268 4.75599 4.78443 4.86154 4.90973 4.95708 5.01989 5.06074 5.10539 5.15640 5.25268 5.33138 5.58232 5.82038 5.98575 6.03574 6.16629 6.22827 6.66138 6.69207 6.87093 7.33526 7.66995 8.05055 8.99116 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003302 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.990477 B = 8478.838435 C = 9150.737951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.217 4.217 3 C 0.160 3.840 4 N -0.542 5.542 5 C 0.062 3.938 6 C -0.088 4.088 7 C -0.104 4.104 8 C 0.515 3.485 9 O -0.589 6.589 10 N -0.699 5.699 11 C 0.138 3.862 12 C 0.131 3.869 13 H 0.061 0.939 14 C 0.056 3.944 15 O -0.390 6.390 16 C 0.049 3.951 17 C 0.106 3.894 18 N -0.612 5.612 19 C -0.254 4.254 20 H 0.083 0.917 21 C -0.014 4.014 22 N -0.925 5.925 23 Si 0.867 3.133 24 H -0.302 1.302 25 H -0.219 1.219 26 H -0.313 1.313 27 C -0.096 4.096 28 C 0.059 3.941 29 H 0.244 0.756 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.409 0.591 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.124 0.876 42 H 0.042 0.958 43 H 0.115 0.885 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.257 0.743 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.033 0.967 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 -11.387 1.712 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.217 4.217 3 C 0.034 3.966 4 N -0.268 5.268 5 C -0.066 4.066 6 C -0.126 4.126 7 C -0.126 4.126 8 C 0.302 3.698 9 O -0.471 6.471 10 N -0.349 5.349 11 C 0.014 3.986 12 C 0.025 3.975 13 H 0.079 0.921 14 C -0.022 4.022 15 O -0.308 6.308 16 C -0.029 4.029 17 C -0.019 4.019 18 N -0.339 5.339 19 C -0.382 4.382 20 H 0.100 0.900 21 C -0.211 4.211 22 N -0.569 5.569 23 Si 0.695 3.305 24 H -0.231 1.231 25 H -0.142 1.142 26 H -0.242 1.242 27 C -0.134 4.134 28 C -0.068 4.068 29 H 0.261 0.739 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.246 0.754 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.142 0.858 42 H 0.061 0.939 43 H 0.133 0.867 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.051 0.949 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.255 -11.851 2.710 15.905 hybrid contribution -0.226 1.278 -2.323 2.661 sum -10.481 -10.573 0.387 14.892 Atomic orbital electron populations 1.25695 0.96802 0.99366 0.98996 1.23225 0.95022 1.01704 1.01791 1.19169 0.84702 0.99637 0.93114 1.62086 1.04367 1.15896 1.44408 1.22118 0.87021 1.01052 0.96377 1.21294 0.98937 0.93379 0.98996 1.21369 0.98307 0.97599 0.95301 1.20930 0.80439 0.81154 0.87270 1.90616 1.35324 1.68377 1.52760 1.45982 1.44743 1.17983 1.26202 1.21130 0.98321 0.91613 0.87514 1.21672 0.97637 0.89517 0.88638 0.92141 1.23084 0.98116 0.83464 0.97551 1.87828 1.68418 1.23662 1.50902 1.23121 0.98318 0.94535 0.86951 1.22178 0.97624 0.85216 0.96865 1.44640 1.63540 1.05558 1.20124 1.19008 1.21448 1.06299 0.91464 0.89995 1.25341 0.97955 0.98988 0.98819 1.70305 1.24052 1.43647 1.18888 0.87395 0.85106 0.77666 0.80312 1.23098 1.14237 1.24156 1.21501 0.92035 1.00577 0.99323 1.22083 0.99057 0.89181 0.96513 0.73930 0.91743 0.86897 0.94206 0.88095 0.91728 0.91261 0.89357 0.75437 0.94038 0.89834 0.93654 0.85840 0.93946 0.86703 0.92550 0.93806 0.93441 0.90843 0.90353 0.94853 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 19.01 74.32 1.41 -1.69 16 2 C -0.22 -4.17 11.51 31.12 0.36 -3.82 16 3 C 0.16 2.80 5.77 84.49 0.49 3.29 16 4 N -0.54 -11.49 4.79 -907.47 -4.35 -15.84 16 5 C 0.06 1.29 5.42 86.33 0.47 1.76 16 6 C -0.09 -2.36 4.68 30.64 0.14 -2.22 16 7 C -0.10 -3.07 2.59 -11.46 -0.03 -3.10 16 8 C 0.51 18.58 7.15 87.66 0.63 19.21 16 9 O -0.59 -24.92 15.98 -3.02 -0.05 -24.97 16 10 N -0.70 -24.59 3.51 -463.07 -1.63 -26.22 16 11 C 0.14 4.81 4.42 86.38 0.38 5.19 16 12 C 0.13 4.43 3.19 45.11 0.14 4.58 16 13 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 14 C 0.06 1.69 6.31 72.22 0.46 2.14 16 15 O -0.39 -12.60 10.74 -148.98 -1.60 -14.20 16 16 C 0.05 1.60 6.98 72.08 0.50 2.10 16 17 C 0.11 4.13 4.41 86.36 0.38 4.52 16 18 N -0.61 -25.57 2.94 -672.96 -1.98 -27.55 16 19 C -0.25 -12.65 8.09 84.03 0.68 -11.97 16 20 H 0.08 4.42 5.30 -2.91 -0.02 4.40 16 21 C -0.01 -0.74 4.90 84.86 0.42 -0.32 16 22 N -0.92 -54.64 13.97 21.65 0.30 -54.33 16 23 Si 0.87 40.14 26.37 68.60 1.81 41.95 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 25 H -0.22 -8.99 4.33 99.48 0.43 -8.56 16 26 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 27 C -0.10 -2.36 5.26 30.65 0.16 -2.20 16 28 C 0.06 1.33 5.08 86.33 0.44 1.77 16 29 H 0.24 2.16 7.80 -4.41 -0.03 2.12 16 30 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 36 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.41 14.23 7.09 -92.71 -0.66 13.57 16 38 H 0.04 1.72 7.54 -2.39 -0.02 1.70 16 39 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.06 2.42 4.88 -2.39 -0.01 2.41 16 45 H 0.04 1.66 6.82 -2.39 -0.02 1.65 16 46 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.08 1.83 7.67 -2.39 -0.02 1.81 16 49 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.09 1.85 6.36 -2.39 -0.02 1.83 16 Total: -1.00 -67.39 385.32 -0.46 -67.85 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.00 Total: 34.08 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 7.03 Total: 19.23 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -7.65 Total: -123.94 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.65 Total: -39.17 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.81 Total: 41.95 kcal Total: -67.39 -0.46 -67.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051254591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.524 kcal (2) G-P(sol) polarization free energy of solvation -67.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds