Wall clock time and date at job start Tue Mar 31 2020 18:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47305 * 97.27922 * 3 2 1 5 5 C 1.46851 * 111.00094 * 45.78096 * 4 3 2 6 6 C 1.53042 * 109.52378 * 185.84362 * 5 4 3 7 7 C 1.53119 * 109.27864 * 300.82563 * 6 5 4 8 8 C 1.50702 * 109.57429 * 177.59224 * 7 6 5 9 9 O 1.21281 * 119.99364 * 240.28409 * 8 7 6 10 10 N 1.34771 * 120.00239 * 60.28026 * 8 7 6 11 11 C 1.46495 * 120.00030 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47044 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.68147 * 300.07732 * 12 11 10 14 14 C 1.53291 * 109.68261 * 179.52232 * 12 11 10 15 15 O 1.42959 * 109.22662 * 187.97452 * 14 12 11 16 16 C 1.42963 * 114.16594 * 62.58119 * 15 14 12 17 17 C 1.53305 * 109.21959 * 297.42011 * 16 15 14 18 18 N 1.47144 * 108.38179 * 52.30570 * 17 16 15 19 19 C 1.36934 * 120.98375 * 129.48891 * 18 17 16 20 20 H 1.08005 * 120.00370 * 211.15986 * 19 18 17 21 21 C 1.38819 * 120.00267 * 31.15491 * 19 18 17 22 22 N 1.31618 * 119.99557 * 10.76928 * 21 19 18 23 23 Si 1.86800 * 120.00158 * 190.76903 * 21 19 18 24 24 H 1.48501 * 109.46923 * 60.00391 * 23 21 19 25 25 H 1.48498 * 109.46791 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47148 * 299.99722 * 23 21 19 27 27 C 1.53121 * 109.16222 * 57.65400 * 7 6 5 28 28 C 1.46848 * 111.00658 * 169.99695 * 4 3 2 29 29 H 4.40888 * 5.52157 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47863 * 337.27632 * 3 2 1 31 31 H 1.08999 * 109.47115 * 217.27019 * 3 2 1 32 32 H 1.08995 * 109.46313 * 305.85887 * 5 4 3 33 33 H 1.08994 * 109.45879 * 65.82750 * 5 4 3 34 34 H 1.08997 * 109.49943 * 180.88141 * 6 5 4 35 35 H 1.08995 * 109.53212 * 60.78226 * 6 5 4 36 36 H 1.08996 * 109.51884 * 297.74930 * 7 6 5 37 37 H 0.97009 * 119.99942 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47179 * 299.99915 * 11 10 8 39 39 H 1.08997 * 109.47201 * 60.00775 * 11 10 8 40 40 H 1.09006 * 109.51549 * 307.90052 * 14 12 11 41 41 H 1.08998 * 109.51325 * 68.04934 * 14 12 11 42 42 H 1.08998 * 109.51219 * 177.50481 * 16 15 14 43 43 H 1.08992 * 109.51774 * 57.34285 * 16 15 14 44 44 H 1.08994 * 109.68269 * 292.57634 * 17 16 15 45 45 H 1.09001 * 109.67927 * 172.02745 * 17 16 15 46 46 H 0.96999 * 120.00051 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.50249 * 182.40610 * 27 7 6 48 48 H 1.08992 * 109.50142 * 62.28326 * 27 7 6 49 49 H 1.09001 * 109.46011 * 294.17699 * 28 4 3 50 50 H 1.08999 * 109.45813 * 54.14057 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1356 0.1764 -1.3738 5 6 2.4091 1.2539 -2.0577 6 6 2.8417 1.3117 -3.5246 7 6 4.3506 1.5618 -3.5972 8 6 4.7937 1.5611 -5.0376 9 8 5.6133 0.7527 -5.4193 10 7 4.2793 2.4586 -5.9014 11 6 4.7105 2.4582 -7.3014 12 6 3.9801 3.5679 -8.0603 13 1 2.9044 3.3989 -8.0122 14 6 4.4367 3.5796 -9.5236 15 8 3.8937 4.7293 -10.1770 16 6 4.3395 5.9752 -9.6358 17 6 3.8778 6.0862 -8.1781 18 7 4.3040 4.8731 -7.4627 19 6 4.9814 4.9561 -6.2756 20 1 5.7013 4.1960 -6.0103 21 6 4.7429 6.0174 -5.4130 22 7 3.7253 6.8240 -5.6279 23 14 5.8661 6.3005 -3.9475 24 1 7.2535 6.5307 -4.4244 25 1 5.3995 7.4885 -3.1886 26 1 5.8377 5.1071 -3.0643 27 6 5.0812 0.4518 -2.8364 28 6 4.5838 0.4191 -1.3895 29 1 -1.0501 0.0002 0.0001 30 1 3.0098 -0.9470 0.3969 31 1 3.0089 0.8186 0.6223 32 1 1.3377 1.0616 -2.0024 33 1 2.6326 2.2055 -1.5754 34 1 2.3139 2.1216 -4.0279 35 1 2.6059 0.3655 -4.0116 36 1 4.5820 2.5263 -3.1453 37 1 3.6240 3.1053 -5.5959 38 1 5.7855 2.6317 -7.3505 39 1 4.4770 1.4942 -7.7533 40 1 5.5253 3.6175 -9.5651 41 1 4.0840 2.6769 -10.0223 42 1 3.9165 6.7960 -10.2151 43 1 5.4276 6.0219 -9.6775 44 1 2.7917 6.1711 -8.1425 45 1 4.3303 6.9633 -7.7155 46 1 3.5584 7.5654 -5.0250 47 1 6.1534 0.6475 -2.8482 48 1 4.8806 -0.5081 -3.3120 49 1 4.7970 1.3746 -0.9103 50 1 5.0916 -0.3795 -0.8489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051254593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:13 Heat of formation + Delta-G solvation = 4.220564 kcal Electronic energy + Delta-G solvation = -30423.225075 eV Core-core repulsion = 26452.787453 eV Total energy + Delta-G solvation = -3970.437622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.95926 -38.75600 -38.06813 -35.37159 -34.54794 -33.58797 -32.34011 -31.44381 -30.73395 -30.39976 -27.69645 -27.15512 -25.47502 -23.53835 -23.42430 -23.12270 -21.68982 -20.30087 -19.72922 -19.24649 -18.26900 -17.20326 -16.38346 -16.02907 -15.91466 -15.56047 -15.27083 -14.97115 -14.87464 -14.64616 -14.44504 -14.02764 -13.93188 -13.71075 -13.54031 -13.21749 -12.97291 -12.84130 -12.77748 -12.53263 -12.06142 -11.81234 -11.55092 -11.33859 -11.14668 -11.08664 -10.91582 -10.78532 -10.72623 -10.57748 -10.44524 -10.41308 -10.30438 -10.23400 -10.07052 -9.68847 -9.29065 -8.94621 -8.69773 -8.46552 -8.24538 -6.76104 -5.94304 -3.43912 2.51408 2.66208 3.19713 3.24435 3.31237 3.33438 3.80194 3.89835 4.16312 4.30263 4.51740 4.76030 4.85479 5.00588 5.12130 5.16626 5.22309 5.23735 5.30593 5.39689 5.43550 5.58930 5.60216 5.68243 5.71126 5.73474 5.78937 5.83601 5.86650 5.97265 6.01828 6.06550 6.13889 6.16196 6.23488 6.27000 6.31527 6.46059 6.51104 6.74974 6.86214 6.94103 7.04937 7.14225 7.42161 7.46188 7.66523 7.84938 8.23339 8.27540 8.86413 9.02243 9.62547 10.22087 11.12158 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.003447 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.228615 B = 8121.963477 C = 8791.527215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.161 3.839 4 N -0.535 5.535 5 C 0.055 3.945 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.515 3.485 9 O -0.564 6.564 10 N -0.694 5.694 11 C 0.136 3.864 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.056 3.944 15 O -0.393 6.393 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.073 0.927 21 C 0.010 3.990 22 N -0.900 5.900 23 Si 0.896 3.104 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C -0.092 4.092 28 C 0.055 3.945 29 H 0.218 0.782 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.415 0.585 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.029 0.971 45 H 0.092 0.908 46 H 0.256 0.744 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 -9.439 6.416 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C 0.034 3.966 4 N -0.260 5.260 5 C -0.073 4.073 6 C -0.143 4.143 7 C -0.131 4.131 8 C 0.301 3.699 9 O -0.444 6.444 10 N -0.345 5.345 11 C 0.011 3.989 12 C 0.018 3.982 13 H 0.058 0.942 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.317 5.317 19 C -0.384 4.384 20 H 0.091 0.909 21 C -0.190 4.190 22 N -0.543 5.543 23 Si 0.726 3.274 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.208 1.208 27 C -0.130 4.130 28 C -0.072 4.072 29 H 0.234 0.766 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.110 0.890 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.055 0.945 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.794 -10.273 5.828 12.137 hybrid contribution 0.391 1.560 1.652 2.305 sum -2.403 -8.713 7.479 11.732 Atomic orbital electron populations 1.24916 0.95919 1.01189 0.99645 1.22824 0.94268 1.00327 1.00775 1.19090 0.84784 1.02182 0.90511 1.62103 1.04409 1.45169 1.14302 1.22161 0.98762 0.92046 0.94315 1.21551 0.93705 1.02986 0.96012 1.21367 0.96810 1.01317 0.93647 1.20375 0.81373 0.80618 0.87546 1.90624 1.34418 1.40042 1.79299 1.46028 1.44727 1.34247 1.09494 1.21142 0.99575 0.96894 0.81271 1.21428 0.97043 0.87621 0.92095 0.94151 1.22867 0.97535 0.88381 0.93534 1.87801 1.71118 1.14403 1.57790 1.23353 0.98109 0.85070 0.97794 1.21410 0.97670 0.91549 0.87491 1.44082 1.66429 0.98449 1.22723 1.19195 1.15553 1.09717 0.93949 0.90941 1.25135 0.96630 0.99599 0.97604 1.69965 1.27626 1.18276 1.38473 0.86473 0.80733 0.77521 0.82675 1.20911 1.21548 1.20775 1.21355 0.99508 0.99110 0.93060 1.22169 0.86931 1.00155 0.97953 0.76556 0.88394 0.92490 0.90058 0.94442 0.90516 0.90651 0.88757 0.74734 0.91647 0.92417 0.93521 0.89919 0.90251 0.94131 0.95282 0.88992 0.93396 0.90699 0.90233 0.94480 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 19.01 29.55 0.56 -1.35 16 2 C -0.18 -1.97 11.51 -37.13 -0.43 -2.40 16 3 C 0.16 1.60 5.77 -6.61 -0.04 1.56 16 4 N -0.53 -6.26 4.79 -238.18 -1.14 -7.40 16 5 C 0.05 0.68 5.08 -3.83 -0.02 0.66 16 6 C -0.10 -1.41 5.26 -26.65 -0.14 -1.55 16 7 C -0.11 -1.67 2.59 -91.65 -0.24 -1.91 16 8 C 0.52 9.40 7.16 -10.99 -0.08 9.32 16 9 O -0.56 -11.74 15.98 5.56 0.09 -11.65 16 10 N -0.69 -12.84 3.68 -60.30 -0.22 -13.06 16 11 C 0.14 2.50 4.45 -4.04 -0.02 2.48 16 12 C 0.13 2.42 3.21 -67.42 -0.22 2.20 16 13 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.06 0.98 6.29 37.31 0.23 1.22 16 15 O -0.39 -7.60 10.74 -35.23 -0.38 -7.97 16 16 C 0.03 0.66 6.99 37.32 0.26 0.92 16 17 C 0.14 3.24 5.38 -3.53 -0.02 3.22 16 18 N -0.59 -13.40 3.03 -164.30 -0.50 -13.90 16 19 C -0.25 -6.18 7.06 -15.06 -0.11 -6.28 16 20 H 0.07 1.80 5.81 -52.48 -0.30 1.49 16 21 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 22 N -0.90 -23.75 11.14 55.49 0.62 -23.13 16 23 Si 0.90 20.35 29.57 -169.99 -5.03 15.32 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 C -0.09 -1.26 4.68 -26.65 -0.12 -1.38 16 28 C 0.06 0.63 5.42 -3.83 -0.02 0.60 16 29 H 0.22 1.36 7.80 -54.09 -0.42 0.94 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 1.04 7.67 -51.93 -0.40 0.64 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.41 8.02 6.80 -40.82 -0.28 7.74 16 38 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 46 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 49 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -28.89 391.87 -9.47 -38.37 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.34 Total: 10.05 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.48 Total: 7.46 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -1.24 Total: -57.49 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.29 Total: -19.62 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.89 -9.47 -38.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051254593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.589 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds