Wall clock time and date at job start Tue Mar 31 2020 18:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47305 * 97.27922 * 3 2 1 5 5 C 1.46851 * 111.00094 * 45.78096 * 4 3 2 6 6 C 1.53042 * 109.52378 * 185.84362 * 5 4 3 7 7 C 1.53119 * 109.27864 * 300.82563 * 6 5 4 8 8 C 1.50702 * 109.57429 * 177.59224 * 7 6 5 9 9 O 1.21281 * 119.99364 * 240.28409 * 8 7 6 10 10 N 1.34771 * 120.00239 * 60.28026 * 8 7 6 11 11 C 1.46495 * 120.00030 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47044 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.68147 * 300.07732 * 12 11 10 14 14 C 1.53291 * 109.68261 * 179.52232 * 12 11 10 15 15 O 1.42959 * 109.22662 * 187.97452 * 14 12 11 16 16 C 1.42963 * 114.16594 * 62.58119 * 15 14 12 17 17 C 1.53305 * 109.21959 * 297.42011 * 16 15 14 18 18 N 1.47144 * 108.38179 * 52.30570 * 17 16 15 19 19 C 1.36934 * 120.98375 * 129.48891 * 18 17 16 20 20 H 1.08005 * 120.00370 * 211.15986 * 19 18 17 21 21 C 1.38819 * 120.00267 * 31.15491 * 19 18 17 22 22 N 1.31618 * 119.99557 * 10.76928 * 21 19 18 23 23 Si 1.86800 * 120.00158 * 190.76903 * 21 19 18 24 24 H 1.48501 * 109.46923 * 60.00391 * 23 21 19 25 25 H 1.48498 * 109.46791 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47148 * 299.99722 * 23 21 19 27 27 C 1.53121 * 109.16222 * 57.65400 * 7 6 5 28 28 C 1.46848 * 111.00658 * 169.99695 * 4 3 2 29 29 H 4.40888 * 5.52157 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47863 * 337.27632 * 3 2 1 31 31 H 1.08999 * 109.47115 * 217.27019 * 3 2 1 32 32 H 1.08995 * 109.46313 * 305.85887 * 5 4 3 33 33 H 1.08994 * 109.45879 * 65.82750 * 5 4 3 34 34 H 1.08997 * 109.49943 * 180.88141 * 6 5 4 35 35 H 1.08995 * 109.53212 * 60.78226 * 6 5 4 36 36 H 1.08996 * 109.51884 * 297.74930 * 7 6 5 37 37 H 0.97009 * 119.99942 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47179 * 299.99915 * 11 10 8 39 39 H 1.08997 * 109.47201 * 60.00775 * 11 10 8 40 40 H 1.09006 * 109.51549 * 307.90052 * 14 12 11 41 41 H 1.08998 * 109.51325 * 68.04934 * 14 12 11 42 42 H 1.08998 * 109.51219 * 177.50481 * 16 15 14 43 43 H 1.08992 * 109.51774 * 57.34285 * 16 15 14 44 44 H 1.08994 * 109.68269 * 292.57634 * 17 16 15 45 45 H 1.09001 * 109.67927 * 172.02745 * 17 16 15 46 46 H 0.96999 * 120.00051 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.50249 * 182.40610 * 27 7 6 48 48 H 1.08992 * 109.50142 * 62.28326 * 27 7 6 49 49 H 1.09001 * 109.46011 * 294.17699 * 28 4 3 50 50 H 1.08999 * 109.45813 * 54.14057 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1356 0.1764 -1.3738 5 6 2.4091 1.2539 -2.0577 6 6 2.8417 1.3117 -3.5246 7 6 4.3506 1.5618 -3.5972 8 6 4.7937 1.5611 -5.0376 9 8 5.6133 0.7527 -5.4193 10 7 4.2793 2.4586 -5.9014 11 6 4.7105 2.4582 -7.3014 12 6 3.9801 3.5679 -8.0603 13 1 2.9044 3.3989 -8.0122 14 6 4.4367 3.5796 -9.5236 15 8 3.8937 4.7293 -10.1770 16 6 4.3395 5.9752 -9.6358 17 6 3.8778 6.0862 -8.1781 18 7 4.3040 4.8731 -7.4627 19 6 4.9814 4.9561 -6.2756 20 1 5.7013 4.1960 -6.0103 21 6 4.7429 6.0174 -5.4130 22 7 3.7253 6.8240 -5.6279 23 14 5.8661 6.3005 -3.9475 24 1 7.2535 6.5307 -4.4244 25 1 5.3995 7.4885 -3.1886 26 1 5.8377 5.1071 -3.0643 27 6 5.0812 0.4518 -2.8364 28 6 4.5838 0.4191 -1.3895 29 1 -1.0501 0.0002 0.0001 30 1 3.0098 -0.9470 0.3969 31 1 3.0089 0.8186 0.6223 32 1 1.3377 1.0616 -2.0024 33 1 2.6326 2.2055 -1.5754 34 1 2.3139 2.1216 -4.0279 35 1 2.6059 0.3655 -4.0116 36 1 4.5820 2.5263 -3.1453 37 1 3.6240 3.1053 -5.5959 38 1 5.7855 2.6317 -7.3505 39 1 4.4770 1.4942 -7.7533 40 1 5.5253 3.6175 -9.5651 41 1 4.0840 2.6769 -10.0223 42 1 3.9165 6.7960 -10.2151 43 1 5.4276 6.0219 -9.6775 44 1 2.7917 6.1711 -8.1425 45 1 4.3303 6.9633 -7.7155 46 1 3.5584 7.5654 -5.0250 47 1 6.1534 0.6475 -2.8482 48 1 4.8806 -0.5081 -3.3120 49 1 4.7970 1.3746 -0.9103 50 1 5.0916 -0.3795 -0.8489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051254593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:12 Heat of formation + Delta-G solvation = -14.335970 kcal Electronic energy + Delta-G solvation = -30424.029746 eV Core-core repulsion = 26452.787453 eV Total energy + Delta-G solvation = -3971.242294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.28422 -40.17859 -39.36534 -36.95985 -35.55788 -35.29588 -33.47900 -32.92952 -32.09083 -31.72057 -29.08540 -28.53587 -26.85709 -25.25141 -24.61005 -24.16511 -23.24676 -21.57635 -21.35170 -20.56159 -19.00895 -18.79776 -17.85209 -17.55619 -17.39684 -16.86957 -16.37345 -16.28474 -16.18207 -16.05206 -15.78612 -15.56358 -15.39497 -15.02535 -14.79307 -14.61715 -14.52111 -14.06584 -13.95038 -13.73688 -13.43937 -13.14357 -12.99752 -12.87237 -12.72687 -12.50601 -12.43231 -12.20298 -12.16636 -12.00540 -11.86459 -11.76133 -11.59098 -11.32522 -11.30023 -11.07539 -10.83642 -10.57414 -10.50962 -9.82330 -9.34861 -8.61944 -7.86950 -5.37974 1.39921 1.45591 1.49272 1.73281 1.75059 1.91684 2.35732 2.46389 3.03169 3.03990 3.29085 3.44072 3.44959 3.64850 3.77758 3.84468 4.04009 4.18002 4.20443 4.25254 4.34456 4.36395 4.41332 4.47303 4.53000 4.55405 4.60182 4.63848 4.65824 4.67310 4.72435 4.76597 4.85715 4.90383 4.99973 5.06121 5.10090 5.11619 5.15148 5.30218 5.33198 5.58825 5.64851 5.69411 5.97582 6.03714 6.29336 6.37201 6.69014 6.72689 7.10752 7.35999 7.76460 8.33013 9.17294 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.003447 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.228615 B = 8121.963477 C = 8791.527215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.217 4.217 3 C 0.160 3.840 4 N -0.542 5.542 5 C 0.061 3.939 6 C -0.097 4.097 7 C -0.106 4.106 8 C 0.513 3.487 9 O -0.590 6.590 10 N -0.696 5.696 11 C 0.141 3.859 12 C 0.127 3.873 13 H 0.037 0.963 14 C 0.057 3.943 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.242 4.242 20 H 0.068 0.932 21 C -0.030 4.030 22 N -0.926 5.926 23 Si 0.942 3.058 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.272 1.272 27 C -0.087 4.087 28 C 0.061 3.939 29 H 0.244 0.756 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.043 0.957 44 H 0.007 0.993 45 H 0.066 0.934 46 H 0.250 0.750 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.039 0.961 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 -10.719 6.765 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.218 4.218 3 C 0.034 3.966 4 N -0.268 5.268 5 C -0.067 4.067 6 C -0.135 4.135 7 C -0.127 4.127 8 C 0.300 3.700 9 O -0.472 6.472 10 N -0.345 5.345 11 C 0.017 3.983 12 C 0.020 3.980 13 H 0.054 0.946 14 C -0.021 4.021 15 O -0.316 6.316 16 C -0.032 4.032 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.372 4.372 20 H 0.085 0.915 21 C -0.227 4.227 22 N -0.571 5.571 23 Si 0.771 3.229 24 H -0.215 1.215 25 H -0.222 1.222 26 H -0.198 1.198 27 C -0.126 4.126 28 C -0.067 4.067 29 H 0.260 0.740 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.135 0.865 42 H 0.122 0.878 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.058 0.942 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.993 -11.575 6.170 13.454 hybrid contribution 0.423 1.906 1.499 2.461 sum -2.571 -9.669 7.669 12.606 Atomic orbital electron populations 1.25694 0.96830 1.00096 0.98309 1.23243 0.95068 1.01444 1.02010 1.19177 0.84637 1.03333 0.89426 1.62086 1.04443 1.44590 1.15641 1.22058 0.99020 0.92249 0.93368 1.21476 0.92351 1.02575 0.97074 1.21377 0.98139 1.01593 0.91600 1.20886 0.80662 0.79850 0.88580 1.90604 1.35547 1.41023 1.80003 1.46072 1.44556 1.34154 1.09760 1.21095 0.98315 0.97482 0.81405 1.21541 0.96872 0.86210 0.93328 0.94576 1.22989 0.97760 0.89131 0.92253 1.87805 1.71363 1.14676 1.57744 1.23222 0.98276 0.86065 0.95641 1.21233 0.96039 0.90721 0.89583 1.44287 1.66347 0.99853 1.22613 1.19233 1.14847 1.08972 0.94196 0.91457 1.25594 0.97667 0.99903 0.99508 1.70087 1.29074 1.18768 1.39192 0.85743 0.78971 0.77350 0.80825 1.21535 1.22160 1.19780 1.21308 0.99045 0.97761 0.94449 1.22141 0.86971 1.01262 0.96298 0.73985 0.86762 0.91708 0.89812 0.94918 0.90936 0.90949 0.89519 0.75232 0.93322 0.90399 0.93323 0.86496 0.87777 0.93890 0.97534 0.91604 0.94076 0.91296 0.91210 0.94241 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 19.01 74.32 1.41 -1.90 16 2 C -0.22 -4.36 11.51 31.12 0.36 -4.00 16 3 C 0.16 2.88 5.77 84.50 0.49 3.37 16 4 N -0.54 -11.82 4.79 -907.47 -4.35 -16.17 16 5 C 0.06 1.46 5.08 86.33 0.44 1.89 16 6 C -0.10 -2.57 5.26 30.65 0.16 -2.41 16 7 C -0.11 -3.18 2.59 -11.46 -0.03 -3.21 16 8 C 0.51 18.64 7.16 87.66 0.63 19.27 16 9 O -0.59 -24.44 15.98 -3.03 -0.05 -24.48 16 10 N -0.70 -25.63 3.68 -463.08 -1.70 -27.34 16 11 C 0.14 5.09 4.45 86.38 0.38 5.48 16 12 C 0.13 4.78 3.21 44.97 0.14 4.92 16 13 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 14 C 0.06 1.89 6.29 72.08 0.45 2.34 16 15 O -0.40 -14.53 10.74 -148.98 -1.60 -16.13 16 16 C 0.05 1.69 6.99 72.08 0.50 2.19 16 17 C 0.15 6.77 5.38 86.36 0.46 7.23 16 18 N -0.61 -27.42 3.03 -673.72 -2.04 -29.46 16 19 C -0.24 -11.81 7.06 84.04 0.59 -11.22 16 20 H 0.07 3.35 5.81 -2.91 -0.02 3.33 16 21 C -0.03 -1.52 5.06 84.86 0.43 -1.09 16 22 N -0.93 -49.82 11.14 21.65 0.24 -49.58 16 23 Si 0.94 42.06 29.57 68.60 2.03 44.08 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 25 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C -0.09 -2.32 4.68 30.65 0.14 -2.18 16 28 C 0.06 1.26 5.42 86.33 0.47 1.73 16 29 H 0.24 2.42 7.80 -4.41 -0.03 2.39 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 32 H 0.08 1.97 6.36 -2.39 -0.02 1.95 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.97 7.67 -2.39 -0.02 1.95 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.41 15.97 6.80 -92.70 -0.63 15.34 16 38 H 0.05 1.93 7.57 -2.39 -0.02 1.91 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.07 3.32 6.33 -2.39 -0.02 3.30 16 46 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 47 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.10 1.68 8.12 -2.39 -0.02 1.66 16 Total: -1.00 -61.66 391.87 -0.14 -61.80 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.29 Total: 34.87 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 7.04 Total: 22.42 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -7.85 Total: -122.56 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.65 Total: -40.62 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -61.66 -0.14 -61.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051254593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.466 kcal (2) G-P(sol) polarization free energy of solvation -61.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds