Wall clock time and date at job start Tue Mar 31 2020 18:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47228 * 2 1 4 4 H 1.08997 * 109.47512 * 305.00573 * 3 2 1 5 5 C 1.53002 * 109.47181 * 65.00235 * 3 2 1 6 6 C 1.50703 * 109.47437 * 185.00134 * 3 2 1 7 7 C 1.41269 * 126.70313 * 275.26161 * 6 3 2 8 8 C 1.36822 * 103.84328 * 180.12220 * 7 6 3 9 9 C 1.47519 * 126.94217 * 179.90821 * 8 7 6 10 10 O 1.21580 * 119.99923 * 359.70345 * 9 8 7 11 11 N 1.34776 * 119.99861 * 179.71111 * 9 8 7 12 12 C 1.46499 * 119.99591 * 179.97438 * 11 9 8 13 13 H 1.09000 * 108.45085 * 324.99767 * 12 11 9 14 14 C 1.52570 * 108.51318 * 207.30681 * 12 11 9 15 15 C 1.51029 * 109.28055 * 153.60884 * 14 12 11 16 16 C 1.53945 * 109.97129 * 92.06532 * 15 14 12 17 17 N 1.47607 * 112.14177 * 319.41749 * 16 15 14 18 18 C 1.36942 * 118.63850 * 137.89113 * 17 16 15 19 19 H 1.08003 * 119.99458 * 206.46093 * 18 17 16 20 20 C 1.38807 * 120.00153 * 26.45926 * 18 17 16 21 21 N 1.31615 * 119.99917 * 15.67607 * 20 18 17 22 22 Si 1.86807 * 119.99877 * 195.67987 * 20 18 17 23 23 H 1.48501 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46798 * 119.99786 * 22 20 18 25 25 H 1.48500 * 109.46776 * 239.99618 * 22 20 18 26 26 C 1.44579 * 122.71487 * 317.87135 * 17 16 15 27 27 C 1.47099 * 108.51020 * 82.68959 * 12 11 9 28 28 O 1.34640 * 106.11403 * 359.64365 * 8 7 6 29 29 N 1.20886 * 111.46888 * 0.23956 * 28 8 7 30 30 H 1.09007 * 109.46731 * 299.99731 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99290 * 1 2 3 32 32 H 1.08997 * 109.47227 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46734 * 240.00202 * 2 1 3 34 34 H 1.08999 * 109.47175 * 119.99924 * 2 1 3 35 35 H 1.08997 * 109.47421 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47153 * 300.00161 * 5 3 2 37 37 H 1.09001 * 109.47109 * 59.99738 * 5 3 2 38 38 H 1.07998 * 128.07839 * 0.02562 * 7 6 3 39 39 H 0.96998 * 119.99786 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.48811 * 273.70760 * 14 12 11 41 41 H 1.09000 * 109.48510 * 33.76773 * 14 12 11 42 42 H 1.09004 * 109.43868 * 331.90414 * 15 14 12 43 43 H 1.09002 * 109.31009 * 212.15022 * 15 14 12 44 44 H 1.09004 * 108.94704 * 198.73310 * 16 15 14 45 45 H 1.08997 * 108.87629 * 80.05939 * 16 15 14 46 46 H 0.97003 * 119.99863 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.44811 * 330.68257 * 26 17 16 48 48 H 1.09001 * 109.42601 * 210.75003 * 26 17 16 49 49 H 1.09004 * 109.32655 * 304.31346 * 27 12 11 50 50 H 1.08993 * 109.32770 * 63.96653 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5420 1.4443 -0.1239 7 6 4.4760 1.3087 0.9273 8 6 5.6891 1.3772 0.2981 9 6 7.0204 1.2924 0.9278 10 8 7.1156 1.1514 2.1316 11 7 8.1312 1.3714 0.1686 12 6 9.4533 1.2877 0.7940 13 1 9.4048 1.7719 1.7694 14 6 10.4496 2.0486 -0.0755 15 6 11.5909 2.5372 0.7846 16 6 12.7280 1.4995 0.7885 17 7 12.2188 0.1164 0.8697 18 6 12.7983 -0.8436 0.0838 19 1 12.2304 -1.7126 -0.2143 20 6 14.1155 -0.6999 -0.3298 21 7 14.9004 0.1734 0.2648 22 14 14.7741 -1.7460 -1.7304 23 1 13.6997 -2.6436 -2.2255 24 1 15.2309 -0.8641 -2.8344 25 1 15.9155 -2.5621 -1.2443 26 6 11.1338 -0.2666 1.7451 27 6 9.7869 -0.1311 0.9929 28 8 5.4221 1.5317 -1.0125 29 7 4.2318 1.5658 -1.2205 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9991 3.1540 1.3076 36 1 0.5490 2.1252 1.3970 37 1 2.0699 1.5874 2.1492 38 1 4.2786 1.1823 1.9815 39 1 8.0552 1.4836 -0.7919 40 1 10.8334 1.3874 -0.8524 41 1 9.9522 2.9018 -0.5368 42 1 11.2371 2.6896 1.8043 43 1 11.9639 3.4808 0.3865 44 1 13.3768 1.6886 1.6437 45 1 13.3090 1.6095 -0.1272 46 1 15.8208 0.2740 -0.0245 47 1 11.1274 0.3826 2.6207 48 1 11.2706 -1.3008 2.0611 49 1 8.9989 -0.6088 1.5752 50 1 9.8671 -0.6222 0.0232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052773840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:17 Heat of formation + Delta-G solvation = 31.253758 kcal Electronic energy + Delta-G solvation = -29232.726947 eV Core-core repulsion = 25263.461572 eV Total energy + Delta-G solvation = -3969.265375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.22722 -39.99699 -37.74498 -37.50919 -34.96083 -33.49758 -32.79082 -32.00922 -31.57478 -29.94955 -29.89623 -26.23937 -25.72640 -24.71831 -23.78063 -23.33296 -22.78730 -21.30496 -20.27148 -19.94296 -19.23084 -18.31431 -17.93590 -16.78009 -16.40156 -16.08611 -15.42062 -15.23700 -15.06848 -14.75623 -14.29906 -14.14715 -13.98980 -13.90930 -13.56914 -13.35674 -13.16944 -12.83965 -12.59003 -12.57214 -12.28050 -12.00528 -11.88298 -11.64279 -11.44678 -11.41438 -11.26905 -11.08412 -10.87352 -10.78055 -10.53177 -10.34848 -10.32317 -10.20240 -10.08074 -9.91314 -9.81833 -9.76652 -9.61747 -8.98524 -8.40232 -6.66563 -5.77847 -3.21485 0.64507 1.79498 2.47879 2.94680 3.17776 3.36393 3.45004 3.46623 3.63986 4.17422 4.45337 4.50217 4.58498 4.65333 4.79506 4.84894 5.01355 5.08031 5.09088 5.14408 5.25648 5.33850 5.43488 5.44287 5.51385 5.54045 5.58826 5.59065 5.66170 5.70372 5.85279 5.89447 5.98846 6.01950 6.07797 6.27066 6.43416 6.46812 6.59154 6.68162 6.75037 6.81572 6.88395 7.01832 7.37603 7.43469 7.71089 7.83574 7.85167 8.01768 8.47643 9.24756 9.91514 10.36444 11.29474 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.002189 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.495328 B =12786.625396 C =13220.323650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.013 4.013 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.018 3.982 7 C -0.153 4.153 8 C -0.076 4.076 9 C 0.600 3.400 10 O -0.514 6.514 11 N -0.709 5.709 12 C 0.161 3.839 13 H 0.078 0.922 14 C -0.113 4.113 15 C -0.141 4.141 16 C 0.177 3.823 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.163 3.837 27 C -0.158 4.158 28 O 0.116 5.884 29 N -0.346 5.346 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.181 0.819 39 H 0.403 0.597 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.026 0.974 45 H 0.075 0.925 46 H 0.252 0.748 47 H 0.035 0.965 48 H 0.050 0.950 49 H 0.054 0.946 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.006 4.875 0.014 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.140 4.140 7 C -0.175 4.175 8 C -0.142 4.142 9 C 0.382 3.618 10 O -0.390 6.390 11 N -0.358 5.358 12 C 0.060 3.940 13 H 0.096 0.904 14 C -0.151 4.151 15 C -0.180 4.180 16 C 0.052 3.948 17 N -0.312 5.312 18 C -0.386 4.386 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.034 3.966 27 C -0.199 4.199 28 O 0.043 5.957 29 N -0.047 5.047 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.199 0.801 39 H 0.238 0.762 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.037 4.984 -0.410 25.532 hybrid contribution 0.375 -0.563 -0.504 0.844 sum -24.662 4.421 -0.913 25.072 Atomic orbital electron populations 1.21818 0.94960 1.02070 1.02125 1.21573 0.96348 0.94728 1.02858 1.19609 0.85315 0.97959 1.00292 0.89224 1.21904 1.02048 1.00682 0.95933 1.23613 0.98846 1.03161 0.88421 1.22785 0.89465 1.03170 1.02100 1.24468 0.97611 1.07881 0.84245 1.16564 0.81128 0.77942 0.86184 1.90872 1.85341 1.49847 1.12943 1.46490 1.06313 1.71733 1.11295 1.20200 0.78935 0.97913 0.96999 0.90400 1.21298 0.95605 0.98897 0.99282 1.22011 0.97713 0.99892 0.98382 1.21031 0.90918 0.81092 1.01764 1.43701 1.37195 1.04630 1.45672 1.19243 0.93334 1.02241 1.23811 0.91675 1.25030 0.95706 0.98895 0.99848 1.70079 1.05828 1.38134 1.40763 0.86277 0.78696 0.79771 0.82346 1.20320 1.21631 1.21796 1.20559 0.86270 0.98486 0.91298 1.21916 1.00693 0.94812 1.02497 1.84982 1.19433 1.66415 1.24846 1.73725 0.89299 1.17493 1.24163 0.92147 0.92568 0.92363 0.91656 0.91268 0.92157 0.91162 0.91825 0.80149 0.76229 0.89800 0.92932 0.93310 0.92399 0.95635 0.90664 0.93756 0.94700 0.93183 0.92720 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.79 5.38 -26.73 -0.14 -0.93 16 3 C -0.01 -0.09 2.85 -91.77 -0.26 -0.35 16 4 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -0.87 8.57 37.16 0.32 -0.55 16 6 C 0.02 0.18 6.20 -82.16 -0.51 -0.33 16 7 C -0.15 -1.65 10.13 -38.94 -0.39 -2.04 16 8 C -0.08 -0.93 7.29 -36.31 -0.26 -1.20 16 9 C 0.60 8.49 7.60 -12.48 -0.09 8.40 16 10 O -0.51 -8.75 16.23 5.30 0.09 -8.66 16 11 N -0.71 -9.56 4.91 -57.87 -0.28 -9.84 16 12 C 0.16 2.56 1.94 -70.98 -0.14 2.42 16 13 H 0.08 1.33 6.72 -51.93 -0.35 0.98 16 14 C -0.11 -1.81 4.98 -27.94 -0.14 -1.95 16 15 C -0.14 -2.49 5.72 -27.23 -0.16 -2.64 16 16 C 0.18 4.02 4.66 -2.94 -0.01 4.01 16 17 N -0.59 -14.00 2.27 -172.09 -0.39 -14.39 16 18 C -0.26 -6.75 9.44 -15.06 -0.14 -6.89 16 19 H 0.07 1.71 7.88 -52.48 -0.41 1.29 16 20 C 0.00 0.10 4.87 -17.43 -0.08 0.01 16 21 N -0.90 -25.56 11.01 55.49 0.61 -24.95 16 22 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.16 3.34 5.66 -4.09 -0.02 3.32 16 27 C -0.16 -2.79 5.18 -28.58 -0.15 -2.94 16 28 O 0.12 1.41 11.04 15.55 0.17 1.58 16 29 N -0.35 -4.22 12.04 33.52 0.40 -3.82 16 30 H 0.06 0.26 6.57 -51.92 -0.34 -0.08 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.31 6.56 -51.93 -0.34 -0.03 16 37 H 0.06 0.36 7.49 -51.93 -0.39 -0.03 16 38 H 0.18 1.66 7.66 -52.49 -0.40 1.26 16 39 H 0.40 4.59 8.41 -40.82 -0.34 4.25 16 40 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16 41 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 42 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 45 H 0.08 1.91 6.33 -51.93 -0.33 1.58 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.03 0.69 8.06 -51.93 -0.42 0.28 16 48 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 49 H 0.05 0.95 7.67 -51.93 -0.40 0.56 16 50 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -29.78 394.20 -8.58 -38.36 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.26 Total: 1.58 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.84 Total: -2.08 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.34 Total: -53.00 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.26 Total: -7.08 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.78 -8.58 -38.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052773840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.616 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds