Wall clock time and date at job start Tue Mar 31 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47228 * 2 1 4 4 H 1.08997 * 109.47512 * 305.00573 * 3 2 1 5 5 C 1.53002 * 109.47181 * 65.00235 * 3 2 1 6 6 C 1.50703 * 109.47437 * 185.00134 * 3 2 1 7 7 C 1.41269 * 126.70313 * 275.26161 * 6 3 2 8 8 C 1.36822 * 103.84328 * 180.12220 * 7 6 3 9 9 C 1.47519 * 126.94217 * 179.90821 * 8 7 6 10 10 O 1.21580 * 119.99923 * 359.70345 * 9 8 7 11 11 N 1.34776 * 119.99861 * 179.71111 * 9 8 7 12 12 C 1.46499 * 119.99591 * 179.97438 * 11 9 8 13 13 H 1.09000 * 108.45085 * 324.99767 * 12 11 9 14 14 C 1.52570 * 108.51318 * 207.30681 * 12 11 9 15 15 C 1.51029 * 109.28055 * 153.60884 * 14 12 11 16 16 C 1.53945 * 109.97129 * 92.06532 * 15 14 12 17 17 N 1.47607 * 112.14177 * 319.41749 * 16 15 14 18 18 C 1.36942 * 118.63850 * 137.89113 * 17 16 15 19 19 H 1.08003 * 119.99458 * 206.46093 * 18 17 16 20 20 C 1.38807 * 120.00153 * 26.45926 * 18 17 16 21 21 N 1.31615 * 119.99917 * 15.67607 * 20 18 17 22 22 Si 1.86807 * 119.99877 * 195.67987 * 20 18 17 23 23 H 1.48501 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46798 * 119.99786 * 22 20 18 25 25 H 1.48500 * 109.46776 * 239.99618 * 22 20 18 26 26 C 1.44579 * 122.71487 * 317.87135 * 17 16 15 27 27 C 1.47099 * 108.51020 * 82.68959 * 12 11 9 28 28 O 1.34640 * 106.11403 * 359.64365 * 8 7 6 29 29 N 1.20886 * 111.46888 * 0.23956 * 28 8 7 30 30 H 1.09007 * 109.46731 * 299.99731 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99290 * 1 2 3 32 32 H 1.08997 * 109.47227 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46734 * 240.00202 * 2 1 3 34 34 H 1.08999 * 109.47175 * 119.99924 * 2 1 3 35 35 H 1.08997 * 109.47421 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47153 * 300.00161 * 5 3 2 37 37 H 1.09001 * 109.47109 * 59.99738 * 5 3 2 38 38 H 1.07998 * 128.07839 * 0.02562 * 7 6 3 39 39 H 0.96998 * 119.99786 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.48811 * 273.70760 * 14 12 11 41 41 H 1.09000 * 109.48510 * 33.76773 * 14 12 11 42 42 H 1.09004 * 109.43868 * 331.90414 * 15 14 12 43 43 H 1.09002 * 109.31009 * 212.15022 * 15 14 12 44 44 H 1.09004 * 108.94704 * 198.73310 * 16 15 14 45 45 H 1.08997 * 108.87629 * 80.05939 * 16 15 14 46 46 H 0.97003 * 119.99863 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.44811 * 330.68257 * 26 17 16 48 48 H 1.09001 * 109.42601 * 210.75003 * 26 17 16 49 49 H 1.09004 * 109.32655 * 304.31346 * 27 12 11 50 50 H 1.08993 * 109.32770 * 63.96653 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5420 1.4443 -0.1239 7 6 4.4760 1.3087 0.9273 8 6 5.6891 1.3772 0.2981 9 6 7.0204 1.2924 0.9278 10 8 7.1156 1.1514 2.1316 11 7 8.1312 1.3714 0.1686 12 6 9.4533 1.2877 0.7940 13 1 9.4048 1.7719 1.7694 14 6 10.4496 2.0486 -0.0755 15 6 11.5909 2.5372 0.7846 16 6 12.7280 1.4995 0.7885 17 7 12.2188 0.1164 0.8697 18 6 12.7983 -0.8436 0.0838 19 1 12.2304 -1.7126 -0.2143 20 6 14.1155 -0.6999 -0.3298 21 7 14.9004 0.1734 0.2648 22 14 14.7741 -1.7460 -1.7304 23 1 13.6997 -2.6436 -2.2255 24 1 15.2309 -0.8641 -2.8344 25 1 15.9155 -2.5621 -1.2443 26 6 11.1338 -0.2666 1.7451 27 6 9.7869 -0.1311 0.9929 28 8 5.4221 1.5317 -1.0125 29 7 4.2318 1.5658 -1.2205 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9991 3.1540 1.3076 36 1 0.5490 2.1252 1.3970 37 1 2.0699 1.5874 2.1492 38 1 4.2786 1.1823 1.9815 39 1 8.0552 1.4836 -0.7919 40 1 10.8334 1.3874 -0.8524 41 1 9.9522 2.9018 -0.5368 42 1 11.2371 2.6896 1.8043 43 1 11.9639 3.4808 0.3865 44 1 13.3768 1.6886 1.6437 45 1 13.3090 1.6095 -0.1272 46 1 15.8208 0.2740 -0.0245 47 1 11.1274 0.3826 2.6207 48 1 11.2706 -1.3008 2.0611 49 1 8.9989 -0.6088 1.5752 50 1 9.8671 -0.6222 0.0232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052773840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:16 Heat of formation + Delta-G solvation = 14.916404 kcal Electronic energy + Delta-G solvation = -29233.435388 eV Core-core repulsion = 25263.461572 eV Total energy + Delta-G solvation = -3969.973816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.11381 -41.23356 -39.23390 -38.13047 -36.49568 -34.34365 -34.18042 -33.33217 -33.09314 -31.51833 -30.39488 -27.96905 -26.30875 -26.08107 -25.44334 -24.28837 -23.98410 -22.08547 -21.59815 -21.19750 -20.64712 -19.29514 -18.84463 -18.57057 -17.45647 -17.34359 -16.94839 -16.09513 -16.04899 -15.93213 -15.70913 -15.36511 -15.25547 -15.02576 -14.78187 -14.55070 -14.31675 -14.15584 -13.67560 -13.59904 -13.18965 -13.02678 -13.00220 -12.90521 -12.74254 -12.53400 -12.38275 -12.19889 -12.15443 -12.04266 -11.96344 -11.74090 -11.61380 -11.58384 -11.51139 -11.33436 -11.29218 -11.07969 -10.85877 -10.43766 -10.21666 -8.63170 -7.82554 -5.28411 -0.31558 0.96223 1.46305 1.47706 1.49607 1.58883 1.86865 2.13576 2.53824 2.90492 3.30700 3.36141 3.67345 3.75112 3.86339 3.87211 3.97554 4.05741 4.11196 4.14333 4.31280 4.44913 4.45318 4.47319 4.55188 4.60853 4.67421 4.73739 4.78437 4.84101 4.92809 4.99953 5.02174 5.07560 5.12377 5.13787 5.16445 5.17519 5.23863 5.31062 5.37636 5.44063 5.48047 5.50805 5.61795 5.71838 5.85644 6.27325 6.44521 6.87876 7.00210 7.22240 7.98218 8.36864 9.22569 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.002189 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.495328 B =12786.625396 C =13220.323650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.013 4.013 4 H 0.091 0.909 5 C -0.146 4.146 6 C 0.024 3.976 7 C -0.144 4.144 8 C -0.088 4.088 9 C 0.605 3.395 10 O -0.544 6.544 11 N -0.700 5.700 12 C 0.169 3.831 13 H 0.073 0.927 14 C -0.104 4.104 15 C -0.129 4.129 16 C 0.186 3.814 17 N -0.602 5.602 18 C -0.258 4.258 19 H 0.064 0.936 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.960 3.040 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.296 1.296 26 C 0.159 3.841 27 C -0.140 4.140 28 O 0.110 5.890 29 N -0.364 5.364 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.197 0.803 39 H 0.415 0.585 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.077 0.923 44 H -0.007 1.007 45 H 0.044 0.956 46 H 0.248 0.752 47 H 0.040 0.960 48 H 0.039 0.961 49 H 0.059 0.941 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.729 5.326 -0.326 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.032 4.032 4 H 0.110 0.890 5 C -0.204 4.204 6 C -0.134 4.134 7 C -0.166 4.166 8 C -0.154 4.154 9 C 0.389 3.611 10 O -0.422 6.422 11 N -0.350 5.350 12 C 0.066 3.934 13 H 0.091 0.909 14 C -0.142 4.142 15 C -0.168 4.168 16 C 0.061 3.939 17 N -0.324 5.324 18 C -0.389 4.389 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.217 1.217 25 H -0.223 1.223 26 C 0.032 3.968 27 C -0.181 4.181 28 O 0.039 5.961 29 N -0.066 5.066 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.214 0.786 39 H 0.252 0.748 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.011 0.989 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.793 5.433 -0.769 28.329 hybrid contribution 1.144 -0.729 -0.347 1.400 sum -26.649 4.704 -1.116 27.084 Atomic orbital electron populations 1.21805 0.93544 1.02522 1.02813 1.21555 0.97547 0.94002 1.02202 1.19773 0.83373 0.98659 1.01385 0.89049 1.21917 1.03276 1.00231 0.94927 1.24087 1.00124 1.01603 0.87627 1.23074 0.88943 1.01625 1.02926 1.24163 0.97077 1.09456 0.84699 1.16646 0.81652 0.77020 0.85765 1.90858 1.85913 1.51230 1.14206 1.46259 1.05346 1.71495 1.11889 1.19914 0.80039 0.96437 0.97004 0.90914 1.21185 0.95070 0.99608 0.98311 1.21858 0.96419 0.98884 0.99653 1.20818 0.92279 0.82103 0.98692 1.43878 1.37708 1.04742 1.46071 1.19492 0.93376 1.02501 1.23513 0.91835 1.25712 0.96112 1.00442 1.02105 1.70231 1.05803 1.39875 1.42189 0.85312 0.77885 0.78285 0.79585 1.19305 1.21689 1.22341 1.20658 0.86754 0.97935 0.91492 1.21661 0.98789 0.96260 1.01381 1.84971 1.19580 1.66908 1.24639 1.73721 0.89441 1.18406 1.25067 0.90974 0.92364 0.92079 0.93089 0.91180 0.92480 0.89375 0.91460 0.78586 0.74797 0.91916 0.89651 0.92332 0.90394 0.98904 0.93751 0.94284 0.94122 0.94249 0.92281 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 71.98 0.70 -0.50 16 2 C -0.11 -1.34 5.38 30.59 0.16 -1.17 16 3 C -0.01 -0.16 2.85 -11.54 -0.03 -0.20 16 4 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 5 C -0.15 -1.32 8.57 71.98 0.62 -0.71 16 6 C 0.02 0.45 6.20 43.56 0.27 0.72 16 7 C -0.14 -2.82 10.13 22.68 0.23 -2.59 16 8 C -0.09 -2.03 7.29 24.39 0.18 -1.85 16 9 C 0.61 16.20 7.60 86.69 0.66 16.86 16 10 O -0.54 -17.75 16.23 -3.97 -0.06 -17.81 16 11 N -0.70 -17.59 4.91 -455.26 -2.24 -19.83 16 12 C 0.17 5.10 1.94 43.01 0.08 5.18 16 13 H 0.07 2.35 6.72 -2.39 -0.02 2.33 16 14 C -0.10 -3.14 4.98 29.81 0.15 -2.99 16 15 C -0.13 -4.41 5.72 30.27 0.17 -4.24 16 16 C 0.19 8.63 4.66 86.49 0.40 9.03 16 17 N -0.60 -28.96 2.27 -698.37 -1.58 -30.54 16 18 C -0.26 -13.79 9.44 84.03 0.79 -12.99 16 19 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 20 C -0.05 -2.66 4.87 84.86 0.41 -2.25 16 21 N -0.93 -54.41 11.01 21.65 0.24 -54.18 16 22 Si 0.96 44.47 29.58 68.60 2.03 46.50 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 C 0.16 6.56 5.66 87.37 0.49 7.05 16 27 C -0.14 -4.84 5.18 29.40 0.15 -4.68 16 28 O 0.11 2.53 11.04 65.84 0.73 3.26 16 29 N -0.36 -8.39 12.04 -48.86 -0.59 -8.98 16 30 H 0.07 0.41 6.57 -2.38 -0.02 0.40 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 0.50 6.56 -2.39 -0.02 0.48 16 37 H 0.07 0.57 7.49 -2.39 -0.02 0.55 16 38 H 0.20 3.14 7.66 -2.91 -0.02 3.12 16 39 H 0.42 8.60 8.41 -92.71 -0.78 7.82 16 40 H 0.06 2.22 7.48 -2.39 -0.02 2.20 16 41 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 42 H 0.06 1.91 7.31 -2.38 -0.02 1.89 16 43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 44 H -0.01 -0.37 8.03 -2.39 -0.02 -0.39 16 45 H 0.04 2.32 6.33 -2.39 -0.02 2.30 16 46 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16 47 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16 48 H 0.04 1.68 7.99 -2.39 -0.02 1.66 16 49 H 0.06 2.00 7.67 -2.38 -0.02 1.98 16 50 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -64.99 394.20 4.12 -60.87 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.16 Total: 16.04 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.44 Total: 4.67 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.17 Total: -113.52 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.66 Total: -14.55 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -64.99 4.12 -60.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052773840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.783 kcal (2) G-P(sol) polarization free energy of solvation -64.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds