Wall clock time and date at job start Tue Mar 31 2020 18:30:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47092 * 2 1
4 4 H 1.09006 * 109.47258 * 54.99983 * 3 2 1
5 5 C 1.53001 * 109.47392 * 295.00063 * 3 2 1
6 6 C 1.50700 * 109.47121 * 175.00182 * 3 2 1
7 7 C 1.41263 * 126.70675 * 85.33274 * 6 3 2
8 8 C 1.36829 * 103.84605 * 180.13516 * 7 6 3
9 9 C 1.47509 * 126.94088 * 179.87553 * 8 7 6
10 10 O 1.21584 * 120.00019 * 359.70933 * 9 8 7
11 11 N 1.34775 * 119.99852 * 179.43733 * 9 8 7
12 12 C 1.46503 * 120.00337 * 180.27623 * 11 9 8
13 13 H 1.09004 * 108.44376 * 324.99843 * 12 11 9
14 14 C 1.52561 * 108.51305 * 207.30986 * 12 11 9
15 15 C 1.51038 * 109.27628 * 153.60217 * 14 12 11
16 16 C 1.53946 * 109.96974 * 92.06285 * 15 14 12
17 17 N 1.47603 * 112.14577 * 319.41933 * 16 15 14
18 18 C 1.36934 * 118.64650 * 137.88639 * 17 16 15
19 19 H 1.08000 * 120.00078 * 206.46232 * 18 17 16
20 20 C 1.38810 * 119.99824 * 26.46491 * 18 17 16
21 21 N 1.31622 * 120.00251 * 15.66809 * 20 18 17
22 22 Si 1.86804 * 120.00037 * 195.66763 * 20 18 17
23 23 H 1.48497 * 109.47261 * 90.00141 * 22 20 18
24 24 H 1.48507 * 109.46967 * 210.00138 * 22 20 18
25 25 H 1.48504 * 109.46954 * 330.00133 * 22 20 18
26 26 C 1.44581 * 122.71181 * 317.86865 * 17 16 15
27 27 C 1.47092 * 108.51333 * 82.68184 * 12 11 9
28 28 O 1.34635 * 106.11014 * 359.61352 * 8 7 6
29 29 N 1.20880 * 111.47246 * 0.25940 * 28 8 7
30 30 H 1.09005 * 109.46660 * 299.99944 * 1 2 3
31 31 H 1.09000 * 109.46871 * 59.99622 * 1 2 3
32 32 H 1.08999 * 109.46776 * 179.97438 * 1 2 3
33 33 H 1.09003 * 109.47236 * 240.00528 * 2 1 3
34 34 H 1.08999 * 109.47409 * 119.99837 * 2 1 3
35 35 H 1.09001 * 109.47183 * 299.99871 * 5 3 2
36 36 H 1.09001 * 109.46778 * 59.99939 * 5 3 2
37 37 H 1.08999 * 109.47261 * 179.97438 * 5 3 2
38 38 H 1.08000 * 128.07479 * 0.02562 * 7 6 3
39 39 H 0.97005 * 120.00086 * 0.27150 * 11 9 8
40 40 H 1.09002 * 109.48629 * 273.69452 * 14 12 11
41 41 H 1.08998 * 109.49194 * 33.76273 * 14 12 11
42 42 H 1.08994 * 109.44145 * 331.90238 * 15 14 12
43 43 H 1.09000 * 109.31109 * 212.13918 * 15 14 12
44 44 H 1.08998 * 108.94942 * 198.73327 * 16 15 14
45 45 H 1.08999 * 108.87684 * 80.05761 * 16 15 14
46 46 H 0.97003 * 120.00248 * 179.97438 * 21 20 18
47 47 H 1.09002 * 109.44595 * 330.68693 * 26 17 16
48 48 H 1.08994 * 109.43260 * 210.75333 * 26 17 16
49 49 H 1.09005 * 109.33217 * 304.32356 * 27 12 11
50 50 H 1.09001 * 109.32612 * 63.97625 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 0.8419
5 6 1.6352 2.1266 -1.3073
6 6 3.5419 1.4443 0.1238
7 6 4.4760 1.3205 -0.9286
8 6 5.6891 1.3775 -0.2982
9 6 7.0203 1.2933 -0.9280
10 8 7.1155 1.1532 -2.1320
11 7 8.1311 1.3771 -0.1694
12 6 9.4534 1.2996 -0.7955
13 1 9.3977 0.6054 -1.6341
14 6 10.4416 0.7463 0.2266
15 6 11.5758 0.0601 -0.4973
16 6 12.7252 1.0556 -0.7373
17 7 12.2325 2.3893 -1.1339
18 6 12.8244 3.4969 -0.5880
19 1 12.2674 4.4177 -0.4978
20 6 14.1405 3.4361 -0.1508
21 7 14.9141 2.4404 -0.5284
22 14 14.8136 4.7674 0.9735
23 1 14.5865 4.3812 2.3893
24 1 16.2699 4.9294 0.7321
25 1 14.1195 6.0499 0.6928
26 6 11.1509 2.5745 -2.0752
27 6 9.8035 2.6309 -1.3138
28 8 5.4221 1.5318 1.0124
29 7 4.2318 1.5659 1.2204
30 1 -0.3633 0.5139 0.8901
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 2.0699 1.5876 -2.1492
36 1 0.5489 2.1253 -1.3969
37 1 1.9982 3.1544 -1.3071
38 1 4.2787 1.2056 -1.9842
39 1 8.0552 1.4889 0.7912
40 1 10.8345 1.5634 0.8318
41 1 9.9348 0.0275 0.8704
42 1 11.2189 -0.3177 -1.4553
43 1 11.9382 -0.7716 0.1070
44 1 13.3705 0.6680 -1.5255
45 1 13.3061 1.1514 0.1801
46 1 15.8339 2.3981 -0.2231
47 1 11.1356 1.7420 -2.7788
48 1 11.2995 3.5070 -2.6196
49 1 9.0204 2.9719 -1.9911
50 1 9.8910 3.3302 -0.4823
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001052773842.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:30:25
Heat of formation + Delta-G solvation = 31.268325 kcal
Electronic energy + Delta-G solvation = -29223.355271 eV
Core-core repulsion = 25254.090528 eV
Total energy + Delta-G solvation = -3969.264743 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-45.22863 -39.99640 -37.74476 -37.51110 -34.96023 -33.50112 -32.79021 -32.00860
-31.57365 -29.94871 -29.89754 -26.23891 -25.72865 -24.71715 -23.77985 -23.33381
-22.78804 -21.30847 -20.27187 -19.93964 -19.23244 -18.31572 -17.93579 -16.77910
-16.40122 -16.08319 -15.42687 -15.23664 -15.06203 -14.76941 -14.29330 -14.14561
-13.99889 -13.90381 -13.57445 -13.36098 -13.16486 -12.83796 -12.59033 -12.57294
-12.28140 -12.00459 -11.88514 -11.63935 -11.44865 -11.41726 -11.26495 -11.08981
-10.85591 -10.79246 -10.54046 -10.35171 -10.32412 -10.20622 -10.07806 -9.91275
-9.81381 -9.76255 -9.62450 -8.98507 -8.39805 -6.66615 -5.77564 -3.21375
0.64487 1.79497 2.47857 2.94657 3.17820 3.37319 3.44933 3.45652
3.63934 4.17328 4.44801 4.50345 4.58131 4.65276 4.79339 4.84616
5.01221 5.07886 5.08935 5.14414 5.25365 5.33762 5.43581 5.44293
5.50652 5.54398 5.58398 5.58971 5.66133 5.69971 5.84852 5.89052
5.98851 6.02014 6.07813 6.27105 6.43440 6.46869 6.59196 6.68173
6.75103 6.81662 6.88453 7.01836 7.37607 7.43552 7.71126 7.83509
7.85187 8.01764 8.47812 9.24927 9.91594 10.36589 11.29698
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.025837 B = 0.002146 C = 0.002104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.472615 B =13046.901964 C =13307.910379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.116 4.116
3 C -0.013 4.013
4 H 0.090 0.910
5 C -0.148 4.148
6 C 0.018 3.982
7 C -0.153 4.153
8 C -0.076 4.076
9 C 0.600 3.400
10 O -0.514 6.514
11 N -0.709 5.709
12 C 0.161 3.839
13 H 0.078 0.922
14 C -0.113 4.113
15 C -0.141 4.141
16 C 0.177 3.823
17 N -0.590 5.590
18 C -0.257 4.257
19 H 0.065 0.935
20 C 0.004 3.996
21 N -0.904 5.904
22 Si 0.900 3.100
23 H -0.288 1.288
24 H -0.292 1.292
25 H -0.280 1.280
26 C 0.163 3.837
27 C -0.158 4.158
28 O 0.116 5.884
29 N -0.346 5.346
30 H 0.055 0.945
31 H 0.060 0.940
32 H 0.057 0.943
33 H 0.068 0.932
34 H 0.064 0.936
35 H 0.063 0.937
36 H 0.069 0.931
37 H 0.060 0.940
38 H 0.181 0.819
39 H 0.403 0.597
40 H 0.083 0.917
41 H 0.052 0.948
42 H 0.048 0.952
43 H 0.057 0.943
44 H 0.026 0.974
45 H 0.075 0.925
46 H 0.253 0.747
47 H 0.035 0.965
48 H 0.050 0.950
49 H 0.054 0.946
50 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.042 -5.343 1.154 25.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.155 4.155
3 C -0.032 4.032
4 H 0.108 0.892
5 C -0.206 4.206
6 C -0.140 4.140
7 C -0.175 4.175
8 C -0.142 4.142
9 C 0.382 3.618
10 O -0.390 6.390
11 N -0.358 5.358
12 C 0.060 3.940
13 H 0.096 0.904
14 C -0.151 4.151
15 C -0.180 4.180
16 C 0.052 3.948
17 N -0.312 5.312
18 C -0.387 4.387
19 H 0.083 0.917
20 C -0.195 4.195
21 N -0.548 5.548
22 Si 0.730 3.270
23 H -0.215 1.215
24 H -0.218 1.218
25 H -0.205 1.205
26 C 0.034 3.966
27 C -0.199 4.199
28 O 0.043 5.957
29 N -0.047 5.047
30 H 0.074 0.926
31 H 0.079 0.921
32 H 0.076 0.924
33 H 0.087 0.913
34 H 0.083 0.917
35 H 0.082 0.918
36 H 0.088 0.912
37 H 0.079 0.921
38 H 0.199 0.801
39 H 0.238 0.762
40 H 0.102 0.898
41 H 0.071 0.929
42 H 0.067 0.933
43 H 0.076 0.924
44 H 0.044 0.956
45 H 0.093 0.907
46 H 0.063 0.937
47 H 0.053 0.947
48 H 0.068 0.932
49 H 0.073 0.927
50 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -25.066 -5.341 1.582 25.677
hybrid contribution 0.366 0.666 0.373 0.847
sum -24.699 -4.675 1.955 25.214
Atomic orbital electron populations
1.21819 0.94961 1.02047 1.02159 1.21570 0.96348 0.94744 1.02798
1.19612 0.85320 0.97936 1.00321 0.89213 1.21907 1.02049 1.00733
0.95906 1.23611 0.98843 1.03185 0.88404 1.22786 0.89466 1.03209
1.02058 1.24466 0.97612 1.07905 0.84227 1.16563 0.81125 0.77940
0.86190 1.90873 1.85356 1.49942 1.12837 1.46492 1.06306 1.71734
1.11301 1.20197 0.78940 0.98944 0.95965 0.90401 1.21297 0.95688
1.00527 0.97569 1.22011 0.97774 0.99219 0.98997 1.21032 0.90918
0.82489 1.00367 1.43690 1.37344 1.02456 1.47676 1.19211 0.93397
0.91662 1.34434 0.91695 1.25032 0.95713 0.97839 1.00866 1.70071
1.06316 1.32819 1.45605 0.86328 0.78020 0.81638 0.80998 1.21518
1.21834 1.20500 1.20559 0.86300 0.99072 0.90679 1.21917 1.00665
0.95987 1.01358 1.84979 1.19435 1.66376 1.24874 1.73726 0.89297
1.17454 1.24205 0.92550 0.92136 0.92383 0.91297 0.91687 0.91825
0.91166 0.92110 0.80146 0.76230 0.89803 0.92934 0.93311 0.92404
0.95632 0.90668 0.93701 0.94700 0.93178 0.92716 0.91672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.76 9.67 37.16 0.36 -0.40 16
2 C -0.12 -0.76 5.38 -26.73 -0.14 -0.91 16
3 C -0.01 -0.09 2.85 -91.77 -0.26 -0.36 16
4 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16
5 C -0.15 -0.88 8.56 37.16 0.32 -0.57 16
6 C 0.02 0.18 6.21 -82.16 -0.51 -0.33 16
7 C -0.15 -1.65 10.12 -38.94 -0.39 -2.04 16
8 C -0.08 -0.93 7.29 -36.31 -0.26 -1.20 16
9 C 0.60 8.49 7.60 -12.48 -0.09 8.40 16
10 O -0.51 -8.75 16.23 5.29 0.09 -8.66 16
11 N -0.71 -9.56 4.91 -57.87 -0.28 -9.84 16
12 C 0.16 2.56 1.94 -70.99 -0.14 2.43 16
13 H 0.08 1.33 6.72 -51.93 -0.35 0.98 16
14 C -0.11 -1.81 4.98 -27.94 -0.14 -1.95 16
15 C -0.14 -2.49 5.72 -27.22 -0.16 -2.64 16
16 C 0.18 4.02 4.66 -2.94 -0.01 4.01 16
17 N -0.59 -13.98 2.27 -172.09 -0.39 -14.37 16
18 C -0.26 -6.77 9.44 -15.06 -0.14 -6.91 16
19 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16
20 C 0.00 0.11 4.87 -17.43 -0.08 0.02 16
21 N -0.90 -25.56 11.01 55.49 0.61 -24.95 16
22 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16
23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
26 C 0.16 3.34 5.66 -4.08 -0.02 3.32 16
27 C -0.16 -2.79 5.17 -28.58 -0.15 -2.94 16
28 O 0.12 1.41 11.04 15.57 0.17 1.58 16
29 N -0.35 -4.22 12.04 33.52 0.40 -3.82 16
30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
31 H 0.06 0.26 6.56 -51.93 -0.34 -0.08 16
32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
35 H 0.06 0.36 7.48 -51.93 -0.39 -0.03 16
36 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16
37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.18 1.66 7.65 -52.49 -0.40 1.26 16
39 H 0.40 4.59 8.41 -40.82 -0.34 4.25 16
40 H 0.08 1.53 7.48 -51.93 -0.39 1.15 16
41 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16
42 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16
43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
44 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16
45 H 0.07 1.91 6.33 -51.93 -0.33 1.58 16
46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16
47 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16
48 H 0.05 1.06 7.99 -51.93 -0.41 0.64 16
49 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16
50 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16
LS Contribution 394.17 15.07 5.94 5.94
Total: -1.00 -29.73 394.17 -8.58 -38.32
By element:
Atomic # 1 Polarization: 9.83 SS G_CDS: -8.26 Total: 1.57 kcal
Atomic # 6 Polarization: -0.23 SS G_CDS: -1.84 Total: -2.07 kcal
Atomic # 7 Polarization: -53.32 SS G_CDS: 0.34 Total: -52.98 kcal
Atomic # 8 Polarization: -7.34 SS G_CDS: 0.26 Total: -7.08 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -29.73 -8.58 -38.32 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052773842.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.584 kcal
(2) G-P(sol) polarization free energy of solvation -29.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.853 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.268 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds