Wall clock time and date at job start Tue Mar 31 2020 18:30:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47092 * 2 1
4 4 H 1.09006 * 109.47258 * 54.99983 * 3 2 1
5 5 C 1.53001 * 109.47392 * 295.00063 * 3 2 1
6 6 C 1.50700 * 109.47121 * 175.00182 * 3 2 1
7 7 C 1.41263 * 126.70675 * 85.33274 * 6 3 2
8 8 C 1.36829 * 103.84605 * 180.13516 * 7 6 3
9 9 C 1.47509 * 126.94088 * 179.87553 * 8 7 6
10 10 O 1.21584 * 120.00019 * 359.70933 * 9 8 7
11 11 N 1.34775 * 119.99852 * 179.43733 * 9 8 7
12 12 C 1.46503 * 120.00337 * 180.27623 * 11 9 8
13 13 H 1.09004 * 108.44376 * 324.99843 * 12 11 9
14 14 C 1.52561 * 108.51305 * 207.30986 * 12 11 9
15 15 C 1.51038 * 109.27628 * 153.60217 * 14 12 11
16 16 C 1.53946 * 109.96974 * 92.06285 * 15 14 12
17 17 N 1.47603 * 112.14577 * 319.41933 * 16 15 14
18 18 C 1.36934 * 118.64650 * 137.88639 * 17 16 15
19 19 H 1.08000 * 120.00078 * 206.46232 * 18 17 16
20 20 C 1.38810 * 119.99824 * 26.46491 * 18 17 16
21 21 N 1.31622 * 120.00251 * 15.66809 * 20 18 17
22 22 Si 1.86804 * 120.00037 * 195.66763 * 20 18 17
23 23 H 1.48497 * 109.47261 * 90.00141 * 22 20 18
24 24 H 1.48507 * 109.46967 * 210.00138 * 22 20 18
25 25 H 1.48504 * 109.46954 * 330.00133 * 22 20 18
26 26 C 1.44581 * 122.71181 * 317.86865 * 17 16 15
27 27 C 1.47092 * 108.51333 * 82.68184 * 12 11 9
28 28 O 1.34635 * 106.11014 * 359.61352 * 8 7 6
29 29 N 1.20880 * 111.47246 * 0.25940 * 28 8 7
30 30 H 1.09005 * 109.46660 * 299.99944 * 1 2 3
31 31 H 1.09000 * 109.46871 * 59.99622 * 1 2 3
32 32 H 1.08999 * 109.46776 * 179.97438 * 1 2 3
33 33 H 1.09003 * 109.47236 * 240.00528 * 2 1 3
34 34 H 1.08999 * 109.47409 * 119.99837 * 2 1 3
35 35 H 1.09001 * 109.47183 * 299.99871 * 5 3 2
36 36 H 1.09001 * 109.46778 * 59.99939 * 5 3 2
37 37 H 1.08999 * 109.47261 * 179.97438 * 5 3 2
38 38 H 1.08000 * 128.07479 * 0.02562 * 7 6 3
39 39 H 0.97005 * 120.00086 * 0.27150 * 11 9 8
40 40 H 1.09002 * 109.48629 * 273.69452 * 14 12 11
41 41 H 1.08998 * 109.49194 * 33.76273 * 14 12 11
42 42 H 1.08994 * 109.44145 * 331.90238 * 15 14 12
43 43 H 1.09000 * 109.31109 * 212.13918 * 15 14 12
44 44 H 1.08998 * 108.94942 * 198.73327 * 16 15 14
45 45 H 1.08999 * 108.87684 * 80.05761 * 16 15 14
46 46 H 0.97003 * 120.00248 * 179.97438 * 21 20 18
47 47 H 1.09002 * 109.44595 * 330.68693 * 26 17 16
48 48 H 1.08994 * 109.43260 * 210.75333 * 26 17 16
49 49 H 1.09005 * 109.33217 * 304.32356 * 27 12 11
50 50 H 1.09001 * 109.32612 * 63.97625 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 0.8419
5 6 1.6352 2.1266 -1.3073
6 6 3.5419 1.4443 0.1238
7 6 4.4760 1.3205 -0.9286
8 6 5.6891 1.3775 -0.2982
9 6 7.0203 1.2933 -0.9280
10 8 7.1155 1.1532 -2.1320
11 7 8.1311 1.3771 -0.1694
12 6 9.4534 1.2996 -0.7955
13 1 9.3977 0.6054 -1.6341
14 6 10.4416 0.7463 0.2266
15 6 11.5758 0.0601 -0.4973
16 6 12.7252 1.0556 -0.7373
17 7 12.2325 2.3893 -1.1339
18 6 12.8244 3.4969 -0.5880
19 1 12.2674 4.4177 -0.4978
20 6 14.1405 3.4361 -0.1508
21 7 14.9141 2.4404 -0.5284
22 14 14.8136 4.7674 0.9735
23 1 14.5865 4.3812 2.3893
24 1 16.2699 4.9294 0.7321
25 1 14.1195 6.0499 0.6928
26 6 11.1509 2.5745 -2.0752
27 6 9.8035 2.6309 -1.3138
28 8 5.4221 1.5318 1.0124
29 7 4.2318 1.5659 1.2204
30 1 -0.3633 0.5139 0.8901
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 2.0699 1.5876 -2.1492
36 1 0.5489 2.1253 -1.3969
37 1 1.9982 3.1544 -1.3071
38 1 4.2787 1.2056 -1.9842
39 1 8.0552 1.4889 0.7912
40 1 10.8345 1.5634 0.8318
41 1 9.9348 0.0275 0.8704
42 1 11.2189 -0.3177 -1.4553
43 1 11.9382 -0.7716 0.1070
44 1 13.3705 0.6680 -1.5255
45 1 13.3061 1.1514 0.1801
46 1 15.8339 2.3981 -0.2231
47 1 11.1356 1.7420 -2.7788
48 1 11.2995 3.5070 -2.6196
49 1 9.0204 2.9719 -1.9911
50 1 9.8910 3.3302 -0.4823
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001052773842.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:30:24
Heat of formation + Delta-G solvation = 14.981129 kcal
Electronic energy + Delta-G solvation = -29224.061537 eV
Core-core repulsion = 25254.090528 eV
Total energy + Delta-G solvation = -3969.971009 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.60 seconds
Orbital eigenvalues (eV)
-46.11550 -41.23316 -39.23343 -38.12971 -36.49464 -34.34260 -34.17997 -33.33125
-33.09236 -31.51739 -30.39421 -27.96765 -26.31216 -26.07971 -25.44170 -24.28610
-23.98307 -22.08579 -21.59784 -21.19334 -20.64799 -19.29716 -18.84549 -18.56653
-17.45498 -17.34367 -16.94612 -16.09877 -16.05113 -15.92414 -15.71367 -15.36474
-15.25464 -15.01405 -14.76270 -14.58879 -14.30368 -14.15683 -13.67664 -13.59883
-13.18104 -13.02527 -13.00174 -12.90366 -12.71753 -12.53383 -12.40753 -12.19671
-12.15251 -12.05015 -11.96684 -11.73842 -11.61518 -11.57824 -11.50727 -11.34002
-11.29184 -11.08002 -10.85801 -10.42972 -10.21653 -8.63082 -7.82220 -5.28207
-0.31608 0.96225 1.46989 1.48372 1.49659 1.57643 1.86848 2.13578
2.54029 2.90397 3.30704 3.36071 3.67437 3.75182 3.86268 3.87217
3.97703 4.05762 4.11238 4.14619 4.31227 4.44790 4.45379 4.47344
4.55253 4.61174 4.67453 4.73815 4.78507 4.84106 4.92797 4.99986
5.01951 5.07673 5.12544 5.13862 5.16526 5.17628 5.23884 5.31064
5.37631 5.44050 5.48309 5.50805 5.61796 5.71853 5.85719 6.27300
6.44586 6.87837 7.00212 7.22427 7.98392 8.37101 9.22695
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.025837 B = 0.002146 C = 0.002104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.472615 B =13046.901964 C =13307.910379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.114 4.114
3 C -0.013 4.013
4 H 0.090 0.910
5 C -0.147 4.147
6 C 0.024 3.976
7 C -0.144 4.144
8 C -0.088 4.088
9 C 0.605 3.395
10 O -0.544 6.544
11 N -0.700 5.700
12 C 0.169 3.831
13 H 0.073 0.927
14 C -0.104 4.104
15 C -0.129 4.129
16 C 0.186 3.814
17 N -0.601 5.601
18 C -0.259 4.259
19 H 0.064 0.936
20 C -0.048 4.048
21 N -0.934 5.934
22 Si 0.961 3.039
23 H -0.285 1.285
24 H -0.298 1.298
25 H -0.272 1.272
26 C 0.159 3.841
27 C -0.140 4.140
28 O 0.110 5.890
29 N -0.364 5.364
30 H 0.057 0.943
31 H 0.071 0.929
32 H 0.061 0.939
33 H 0.070 0.930
34 H 0.052 0.948
35 H 0.067 0.933
36 H 0.088 0.912
37 H 0.054 0.946
38 H 0.197 0.803
39 H 0.415 0.585
40 H 0.062 0.938
41 H 0.085 0.915
42 H 0.058 0.942
43 H 0.077 0.923
44 H -0.007 1.007
45 H 0.044 0.956
46 H 0.248 0.752
47 H 0.040 0.960
48 H 0.039 0.961
49 H 0.059 0.941
50 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.760 -5.571 1.566 28.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.152 4.152
3 C -0.032 4.032
4 H 0.109 0.891
5 C -0.204 4.204
6 C -0.134 4.134
7 C -0.166 4.166
8 C -0.154 4.154
9 C 0.389 3.611
10 O -0.422 6.422
11 N -0.350 5.350
12 C 0.066 3.934
13 H 0.091 0.909
14 C -0.142 4.142
15 C -0.168 4.168
16 C 0.061 3.939
17 N -0.324 5.324
18 C -0.390 4.390
19 H 0.082 0.918
20 C -0.243 4.243
21 N -0.581 5.581
22 Si 0.790 3.210
23 H -0.212 1.212
24 H -0.225 1.225
25 H -0.197 1.197
26 C 0.032 3.968
27 C -0.181 4.181
28 O 0.039 5.961
29 N -0.066 5.066
30 H 0.076 0.924
31 H 0.089 0.911
32 H 0.080 0.920
33 H 0.089 0.911
34 H 0.070 0.930
35 H 0.086 0.914
36 H 0.106 0.894
37 H 0.074 0.926
38 H 0.214 0.786
39 H 0.252 0.748
40 H 0.081 0.919
41 H 0.103 0.897
42 H 0.077 0.923
43 H 0.096 0.904
44 H 0.011 0.989
45 H 0.062 0.938
46 H 0.057 0.943
47 H 0.059 0.941
48 H 0.058 0.942
49 H 0.077 0.923
50 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -27.817 -5.562 2.014 28.439
hybrid contribution 1.132 0.740 0.191 1.366
sum -26.684 -4.822 2.205 27.206
Atomic orbital electron populations
1.21806 0.93593 1.02547 1.02767 1.21549 0.97494 0.93875 1.02276
1.19778 0.83381 0.98769 1.01296 0.89129 1.21922 1.03286 1.00184
0.95017 1.24085 1.00119 1.01621 0.87614 1.23074 0.88942 1.01667
1.02886 1.24161 0.97077 1.09473 0.84686 1.16645 0.81648 0.77022
0.85765 1.90859 1.85926 1.51326 1.14100 1.46262 1.05338 1.71508
1.11884 1.19911 0.80030 0.97511 0.95934 0.90921 1.21184 0.95176
1.00402 0.97408 1.21859 0.96410 0.98315 1.00238 1.20819 0.92327
0.83161 0.97590 1.43866 1.37847 1.02247 1.48402 1.19466 0.93450
0.92366 1.33695 0.91828 1.25714 0.96144 0.99958 1.02522 1.70227
1.06252 1.34589 1.46997 0.85364 0.76807 0.79617 0.79228 1.21173
1.22511 1.19683 1.20659 0.86795 0.98752 0.90634 1.21663 0.98767
0.97052 1.00626 1.84968 1.19582 1.66868 1.24667 1.73722 0.89438
1.18368 1.25110 0.92415 0.91057 0.91984 0.91096 0.92957 0.91389
0.89370 0.92645 0.78586 0.74798 0.91930 0.89668 0.92330 0.90405
0.98893 0.93754 0.94288 0.94125 0.94244 0.92269 0.92620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.15 9.67 71.98 0.70 -0.45 16
2 C -0.11 -1.27 5.38 30.59 0.16 -1.10 16
3 C -0.01 -0.17 2.85 -11.54 -0.03 -0.20 16
4 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16
5 C -0.15 -1.37 8.56 71.98 0.62 -0.76 16
6 C 0.02 0.45 6.21 43.55 0.27 0.72 16
7 C -0.14 -2.83 10.12 22.68 0.23 -2.60 16
8 C -0.09 -2.03 7.29 24.39 0.18 -1.85 16
9 C 0.61 16.20 7.60 86.69 0.66 16.86 16
10 O -0.54 -17.75 16.23 -3.98 -0.06 -17.82 16
11 N -0.70 -17.60 4.91 -455.28 -2.24 -19.83 16
12 C 0.17 5.10 1.94 43.01 0.08 5.19 16
13 H 0.07 2.35 6.72 -2.39 -0.02 2.33 16
14 C -0.10 -3.15 4.98 29.81 0.15 -3.00 16
15 C -0.13 -4.42 5.72 30.27 0.17 -4.24 16
16 C 0.19 8.63 4.66 86.49 0.40 9.03 16
17 N -0.60 -28.93 2.27 -698.38 -1.58 -30.51 16
18 C -0.26 -13.83 9.44 84.03 0.79 -13.04 16
19 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16
20 C -0.05 -2.64 4.87 84.86 0.41 -2.22 16
21 N -0.93 -54.38 11.01 21.65 0.24 -54.14 16
22 Si 0.96 44.47 29.58 68.60 2.03 46.50 16
23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
26 C 0.16 6.56 5.66 87.37 0.49 7.05 16
27 C -0.14 -4.84 5.17 29.39 0.15 -4.69 16
28 O 0.11 2.54 11.04 65.90 0.73 3.27 16
29 N -0.36 -8.40 12.04 -48.86 -0.59 -8.99 16
30 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16
31 H 0.07 0.40 6.56 -2.39 -0.02 0.38 16
32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16
33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
35 H 0.07 0.59 7.48 -2.39 -0.02 0.57 16
36 H 0.09 0.52 6.56 -2.39 -0.02 0.51 16
37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16
38 H 0.20 3.15 7.65 -2.91 -0.02 3.12 16
39 H 0.42 8.61 8.41 -92.70 -0.78 7.83 16
40 H 0.06 2.22 7.48 -2.39 -0.02 2.20 16
41 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16
42 H 0.06 1.91 7.31 -2.39 -0.02 1.89 16
43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
44 H -0.01 -0.37 8.03 -2.39 -0.02 -0.39 16
45 H 0.04 2.31 6.33 -2.39 -0.02 2.30 16
46 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16
47 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16
48 H 0.04 1.68 7.99 -2.39 -0.02 1.66 16
49 H 0.06 2.00 7.67 -2.38 -0.02 1.98 16
50 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
Total: -1.00 -64.86 394.17 4.12 -60.74
By element:
Atomic # 1 Polarization: 15.93 SS G_CDS: 0.16 Total: 16.09 kcal
Atomic # 6 Polarization: -0.74 SS G_CDS: 5.44 Total: 4.70 kcal
Atomic # 7 Polarization: -109.30 SS G_CDS: -4.17 Total: -113.47 kcal
Atomic # 8 Polarization: -15.22 SS G_CDS: 0.66 Total: -14.55 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal
Total: -64.86 4.12 -60.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052773842.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.719 kcal
(2) G-P(sol) polarization free energy of solvation -64.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.60 seconds