Wall clock time and date at job start Tue Mar 31 2020 19:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47235 * 2 1 4 4 N 1.46504 * 109.46649 * 119.99441 * 2 1 3 5 5 C 1.34414 * 124.35444 * 300.02536 * 4 2 1 6 6 O 1.21282 * 124.93964 * 0.40930 * 5 4 2 7 7 C 1.51280 * 110.11879 * 180.38728 * 5 4 2 8 8 C 1.54625 * 104.19639 * 16.25037 * 7 5 4 9 9 C 1.46767 * 124.34474 * 120.00036 * 4 2 1 10 10 H 1.08999 * 110.24535 * 43.92030 * 9 4 2 11 11 C 1.50693 * 110.24756 * 282.00597 * 9 4 2 12 12 O 1.21279 * 120.00198 * 359.97438 * 11 9 4 13 13 N 1.34784 * 119.99981 * 180.02562 * 11 9 4 14 14 C 1.47853 * 134.36059 * 180.02562 * 13 11 9 15 15 C 1.52564 * 85.65617 * 156.40609 * 14 13 11 16 16 C 1.47852 * 134.36248 * 0.04549 * 13 11 9 17 17 C 1.53853 * 115.92082 * 265.01539 * 15 14 13 18 18 C 1.55153 * 101.41558 * 264.41615 * 17 15 14 19 19 N 1.47541 * 105.00646 * 324.36101 * 18 17 15 20 20 C 1.36943 * 125.65570 * 203.89025 * 19 18 17 21 21 H 1.08001 * 120.00122 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00011 * 0.03090 * 20 19 18 23 23 N 1.31616 * 119.99975 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99806 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47056 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47053 * 119.99780 * 24 22 20 27 27 H 1.48497 * 109.46947 * 239.99473 * 24 22 20 28 28 C 1.47355 * 108.68627 * 23.91407 * 19 18 17 29 29 H 1.09004 * 109.46772 * 60.00695 * 1 2 3 30 30 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47542 * 300.00503 * 1 2 3 32 32 H 1.08991 * 109.47542 * 239.99497 * 2 1 3 33 33 H 1.08997 * 109.47163 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47248 * 299.99516 * 3 2 1 35 35 H 1.09000 * 109.47120 * 59.99426 * 3 2 1 36 36 H 1.09002 * 110.48759 * 134.93453 * 7 5 4 37 37 H 1.09000 * 110.48479 * 257.56952 * 7 5 4 38 38 H 1.08998 * 110.97218 * 217.08338 * 8 7 5 39 39 H 1.09002 * 110.96847 * 93.32201 * 8 7 5 40 40 H 1.08995 * 113.84476 * 42.21784 * 14 13 11 41 41 H 1.08994 * 113.83790 * 270.58650 * 14 13 11 42 42 H 1.09003 * 113.83954 * 89.41014 * 16 13 11 43 43 H 1.09003 * 113.83851 * 317.78167 * 16 13 11 44 44 H 1.08998 * 111.03883 * 22.45355 * 17 15 14 45 45 H 1.09004 * 111.03962 * 146.38506 * 17 15 14 46 46 H 1.08994 * 110.33434 * 205.47537 * 18 17 15 47 47 H 1.08997 * 110.41589 * 83.28618 * 18 17 15 48 48 H 0.97007 * 119.99974 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.98465 * 238.61645 * 28 19 18 50 50 H 1.09001 * 109.98663 * 117.31015 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.7475 -0.3085 2.4562 6 8 1.0636 0.6456 2.7610 7 6 2.4195 -1.2420 3.4388 8 6 3.4717 -1.9925 2.5901 9 6 2.8654 -1.8888 1.1729 10 1 3.6556 -1.7776 0.4304 11 6 2.0346 -3.1091 0.8706 12 8 0.8404 -3.0000 0.6894 13 7 2.6186 -4.3219 0.8024 14 6 2.1291 -5.6914 0.5356 15 6 3.5619 -5.9954 0.1085 16 6 4.0036 -4.8131 0.9650 17 6 3.8533 -5.8806 -1.3978 18 6 3.6888 -7.3539 -1.8556 19 7 4.2059 -8.1622 -0.7349 20 6 4.6903 -9.4396 -0.8288 21 1 5.0471 -9.9482 0.0546 22 6 4.7230 -10.0807 -2.0596 23 7 4.2880 -9.4611 -3.1362 24 14 5.3846 -11.8230 -2.1878 25 1 5.8086 -12.2916 -0.8441 26 1 4.3223 -12.7184 -2.7125 27 1 6.5490 -11.8438 -3.1091 28 6 4.1140 -7.3672 0.5024 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8934 -0.5139 -0.8898 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.9043 -0.6748 4.2335 37 1 1.6957 -1.9423 3.8558 38 1 3.5554 -3.0331 2.9033 39 1 4.4395 -1.4933 2.6378 40 1 1.4052 -5.7500 -0.2770 41 1 1.8127 -6.2281 1.4299 42 1 4.2581 -5.0823 1.9902 43 1 4.7538 -4.1808 0.4900 44 1 3.1256 -5.2346 -1.8890 45 1 4.8693 -5.5273 -1.5740 46 1 4.2735 -7.5380 -2.7568 47 1 2.6378 -7.5816 -2.0336 48 1 4.3105 -9.9092 -3.9962 49 1 5.1025 -7.2567 0.9484 50 1 3.4388 -7.8520 1.2075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072912744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:49 Heat of formation + Delta-G solvation = 2.915453 kcal Electronic energy + Delta-G solvation = -30277.588376 eV Core-core repulsion = 26307.094160 eV Total energy + Delta-G solvation = -3970.494216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36258 -40.28015 -38.23762 -36.34892 -35.70042 -35.22531 -32.28193 -30.34123 -29.98564 -28.95974 -27.96843 -27.27744 -26.19664 -25.63239 -23.83414 -22.82677 -22.55263 -20.47426 -19.71433 -18.90832 -18.45219 -17.38758 -17.08240 -16.82496 -16.22935 -15.69491 -15.44592 -15.22175 -14.81011 -14.45053 -14.27909 -14.13297 -13.89952 -13.72107 -13.54372 -13.33656 -13.17358 -12.97050 -12.54173 -12.30807 -12.22313 -12.10765 -11.98025 -11.80148 -11.76499 -11.63977 -11.38485 -11.28114 -11.24963 -11.02495 -10.85647 -10.52155 -10.14672 -10.10760 -9.97255 -9.90339 -9.77594 -9.63439 -8.88798 -8.72400 -8.63793 -6.91637 -5.72123 -3.14098 2.29577 2.46610 2.58430 2.93618 3.35489 3.41176 3.43653 3.97277 4.08062 4.14248 4.40992 4.47208 4.55713 4.69276 4.79830 4.87568 4.93273 5.03486 5.07165 5.13496 5.29831 5.36261 5.37584 5.43515 5.44906 5.46137 5.49461 5.55319 5.55443 5.63262 5.73266 5.78028 5.82604 5.83418 5.98477 6.07424 6.18585 6.25962 6.41126 6.44424 6.47769 6.60040 6.65128 6.91025 7.43148 7.55603 7.66863 7.78178 7.97057 8.09280 8.28223 9.14704 9.75530 10.39468 11.31894 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028177 B = 0.002446 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.483861 B =11444.687642 C =11888.175374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.157 3.843 3 C -0.166 4.166 4 N -0.591 5.591 5 C 0.525 3.475 6 O -0.528 6.528 7 C -0.158 4.158 8 C -0.120 4.120 9 C 0.117 3.883 10 H 0.112 0.888 11 C 0.520 3.480 12 O -0.530 6.530 13 N -0.637 5.637 14 C 0.128 3.872 15 C -0.102 4.102 16 C 0.112 3.888 17 C -0.119 4.119 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.223 4.223 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.151 3.849 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.013 0.987 48 H 0.252 0.748 49 H 0.031 0.969 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 17.537 9.165 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.056 3.944 3 C -0.224 4.224 4 N -0.325 5.325 5 C 0.313 3.687 6 O -0.404 6.404 7 C -0.198 4.198 8 C -0.159 4.159 9 C 0.009 3.991 10 H 0.130 0.870 11 C 0.307 3.693 12 O -0.407 6.407 13 N -0.373 5.373 14 C 0.006 3.994 15 C -0.103 4.103 16 C -0.011 4.011 17 C -0.158 4.158 18 C 0.029 3.971 19 N -0.330 5.330 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.025 3.975 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.524 18.197 9.007 20.311 hybrid contribution 0.290 -1.115 -0.160 1.164 sum -0.233 17.081 8.846 19.238 Atomic orbital electron populations 1.22178 0.94276 1.03703 1.02414 1.20923 0.95154 0.92387 0.85974 1.22187 1.01060 0.95811 1.03304 1.48122 1.51251 1.26415 1.06664 1.20739 0.79831 0.84521 0.83582 1.90688 1.39193 1.29227 1.81334 1.22387 0.99404 0.99390 0.98610 1.22615 0.98935 1.02986 0.91318 1.21540 0.92635 0.84328 1.00624 0.87001 1.20556 0.88144 0.83371 0.77230 1.90708 1.14934 1.85249 1.49760 1.50196 1.11523 1.05746 1.69833 1.23082 0.97304 0.78602 1.00419 1.22465 0.94693 0.95366 0.97785 1.23214 0.83944 0.93693 1.00258 1.22698 1.00477 1.01081 0.91519 1.21976 0.97656 0.83678 0.93817 1.44585 1.73604 1.12912 1.01914 1.19108 1.33725 0.88291 0.94018 0.90369 1.24792 1.01486 0.98763 0.95571 1.69799 1.52446 1.36152 0.98586 0.86008 0.78155 0.83894 0.77476 1.20512 1.21757 1.21738 1.20991 0.97269 0.88394 0.90857 0.92002 0.90866 0.91469 0.89746 0.92583 0.91367 0.91059 0.87622 0.87776 0.88606 0.88576 0.89915 0.89659 0.89340 0.89809 0.92258 0.91523 0.87570 0.96921 0.93727 0.95121 0.95625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.20 37.16 0.34 -1.69 16 2 C 0.16 1.70 3.33 -67.93 -0.23 1.48 16 3 C -0.17 -1.54 9.20 37.16 0.34 -1.20 16 4 N -0.59 -6.59 2.02 -158.68 -0.32 -6.91 16 5 C 0.53 6.42 7.41 -10.86 -0.08 6.34 16 6 O -0.53 -8.13 15.12 5.56 0.08 -8.04 16 7 C -0.16 -1.34 6.85 -26.74 -0.18 -1.52 16 8 C -0.12 -0.81 6.47 -25.10 -0.16 -0.97 16 9 C 0.12 1.10 3.24 -68.16 -0.22 0.88 16 10 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 11 C 0.52 6.65 7.36 -10.99 -0.08 6.57 16 12 O -0.53 -8.90 15.80 5.56 0.09 -8.81 16 13 N -0.64 -7.67 3.48 -185.71 -0.65 -8.32 16 14 C 0.13 1.77 8.08 -3.52 -0.03 1.75 16 15 C -0.10 -1.46 0.97 -154.72 -0.15 -1.61 16 16 C 0.11 1.13 6.88 -3.54 -0.02 1.11 16 17 C -0.12 -1.99 6.42 -25.15 -0.16 -2.15 16 18 C 0.15 3.45 5.90 -2.33 -0.01 3.44 16 19 N -0.60 -14.24 3.41 -170.35 -0.58 -14.82 16 20 C -0.22 -5.87 10.28 -15.06 -0.15 -6.02 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -25.85 10.09 55.49 0.56 -25.29 16 24 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.15 2.71 6.75 -3.56 -0.02 2.69 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.05 6.82 -51.93 -0.35 0.70 16 31 H 0.07 0.92 6.77 -51.93 -0.35 0.57 16 32 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.80 6.80 -51.93 -0.35 0.45 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.59 6.82 -51.93 -0.35 0.23 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 1.29 8.12 -51.93 -0.42 0.86 16 41 H 0.09 1.11 8.00 -51.93 -0.42 0.69 16 42 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 44 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.11 2.74 5.89 -51.93 -0.31 2.43 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 50 H 0.03 0.46 7.86 -51.93 -0.41 0.05 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -33.01 391.50 -9.28 -42.28 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.41 Total: -0.91 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.92 Total: 8.70 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.99 Total: -55.35 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.17 Total: -16.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.01 -9.28 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072912744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.197 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds