Wall clock time and date at job start Tue Mar 31 2020 19:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47235 * 2 1 4 4 N 1.46504 * 109.46649 * 119.99441 * 2 1 3 5 5 C 1.34414 * 124.35444 * 300.02536 * 4 2 1 6 6 O 1.21282 * 124.93964 * 0.40930 * 5 4 2 7 7 C 1.51280 * 110.11879 * 180.38728 * 5 4 2 8 8 C 1.54625 * 104.19639 * 16.25037 * 7 5 4 9 9 C 1.46767 * 124.34474 * 120.00036 * 4 2 1 10 10 H 1.08999 * 110.24535 * 43.92030 * 9 4 2 11 11 C 1.50693 * 110.24756 * 282.00597 * 9 4 2 12 12 O 1.21279 * 120.00198 * 359.97438 * 11 9 4 13 13 N 1.34784 * 119.99981 * 180.02562 * 11 9 4 14 14 C 1.47853 * 134.36059 * 180.02562 * 13 11 9 15 15 C 1.52564 * 85.65617 * 156.40609 * 14 13 11 16 16 C 1.47852 * 134.36248 * 0.04549 * 13 11 9 17 17 C 1.53853 * 115.92082 * 265.01539 * 15 14 13 18 18 C 1.55153 * 101.41558 * 264.41615 * 17 15 14 19 19 N 1.47541 * 105.00646 * 324.36101 * 18 17 15 20 20 C 1.36943 * 125.65570 * 203.89025 * 19 18 17 21 21 H 1.08001 * 120.00122 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00011 * 0.03090 * 20 19 18 23 23 N 1.31616 * 119.99975 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99806 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47056 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47053 * 119.99780 * 24 22 20 27 27 H 1.48497 * 109.46947 * 239.99473 * 24 22 20 28 28 C 1.47355 * 108.68627 * 23.91407 * 19 18 17 29 29 H 1.09004 * 109.46772 * 60.00695 * 1 2 3 30 30 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47542 * 300.00503 * 1 2 3 32 32 H 1.08991 * 109.47542 * 239.99497 * 2 1 3 33 33 H 1.08997 * 109.47163 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47248 * 299.99516 * 3 2 1 35 35 H 1.09000 * 109.47120 * 59.99426 * 3 2 1 36 36 H 1.09002 * 110.48759 * 134.93453 * 7 5 4 37 37 H 1.09000 * 110.48479 * 257.56952 * 7 5 4 38 38 H 1.08998 * 110.97218 * 217.08338 * 8 7 5 39 39 H 1.09002 * 110.96847 * 93.32201 * 8 7 5 40 40 H 1.08995 * 113.84476 * 42.21784 * 14 13 11 41 41 H 1.08994 * 113.83790 * 270.58650 * 14 13 11 42 42 H 1.09003 * 113.83954 * 89.41014 * 16 13 11 43 43 H 1.09003 * 113.83851 * 317.78167 * 16 13 11 44 44 H 1.08998 * 111.03883 * 22.45355 * 17 15 14 45 45 H 1.09004 * 111.03962 * 146.38506 * 17 15 14 46 46 H 1.08994 * 110.33434 * 205.47537 * 18 17 15 47 47 H 1.08997 * 110.41589 * 83.28618 * 18 17 15 48 48 H 0.97007 * 119.99974 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.98465 * 238.61645 * 28 19 18 50 50 H 1.09001 * 109.98663 * 117.31015 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.7475 -0.3085 2.4562 6 8 1.0636 0.6456 2.7610 7 6 2.4195 -1.2420 3.4388 8 6 3.4717 -1.9925 2.5901 9 6 2.8654 -1.8888 1.1729 10 1 3.6556 -1.7776 0.4304 11 6 2.0346 -3.1091 0.8706 12 8 0.8404 -3.0000 0.6894 13 7 2.6186 -4.3219 0.8024 14 6 2.1291 -5.6914 0.5356 15 6 3.5619 -5.9954 0.1085 16 6 4.0036 -4.8131 0.9650 17 6 3.8533 -5.8806 -1.3978 18 6 3.6888 -7.3539 -1.8556 19 7 4.2059 -8.1622 -0.7349 20 6 4.6903 -9.4396 -0.8288 21 1 5.0471 -9.9482 0.0546 22 6 4.7230 -10.0807 -2.0596 23 7 4.2880 -9.4611 -3.1362 24 14 5.3846 -11.8230 -2.1878 25 1 5.8086 -12.2916 -0.8441 26 1 4.3223 -12.7184 -2.7125 27 1 6.5490 -11.8438 -3.1091 28 6 4.1140 -7.3672 0.5024 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8934 -0.5139 -0.8898 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.9043 -0.6748 4.2335 37 1 1.6957 -1.9423 3.8558 38 1 3.5554 -3.0331 2.9033 39 1 4.4395 -1.4933 2.6378 40 1 1.4052 -5.7500 -0.2770 41 1 1.8127 -6.2281 1.4299 42 1 4.2581 -5.0823 1.9902 43 1 4.7538 -4.1808 0.4900 44 1 3.1256 -5.2346 -1.8890 45 1 4.8693 -5.5273 -1.5740 46 1 4.2735 -7.5380 -2.7568 47 1 2.6378 -7.5816 -2.0336 48 1 4.3105 -9.9092 -3.9962 49 1 5.1025 -7.2567 0.9484 50 1 3.4388 -7.8520 1.2075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072912744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:48 Heat of formation + Delta-G solvation = -17.970721 kcal Electronic energy + Delta-G solvation = -30278.494068 eV Core-core repulsion = 26307.094160 eV Total energy + Delta-G solvation = -3971.399908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.25426 -41.31701 -39.35970 -37.39144 -37.10817 -36.00971 -34.04022 -31.44111 -31.01357 -30.39744 -29.03726 -28.13961 -27.25527 -27.02370 -25.33892 -23.64800 -23.31017 -22.17850 -20.72095 -19.81838 -19.64036 -18.61871 -18.26594 -17.90683 -17.22260 -16.89923 -16.62038 -16.31238 -16.15259 -15.62879 -15.50563 -15.20927 -15.00202 -14.69121 -14.45996 -14.22982 -14.14665 -13.86991 -13.82183 -13.65376 -13.54384 -13.30635 -13.03167 -12.84111 -12.81825 -12.75445 -12.52203 -12.45327 -12.37948 -12.14942 -12.10696 -11.95602 -11.82460 -11.70644 -11.48821 -11.26094 -10.94082 -10.70884 -10.66774 -9.78656 -9.63902 -8.82717 -7.73199 -5.16304 1.39527 1.49991 1.50642 1.55811 1.60473 1.73934 2.07529 2.53341 3.25087 3.31088 3.35143 3.46398 3.51024 3.69513 3.80861 3.87615 3.96240 4.10423 4.14488 4.17688 4.24850 4.26683 4.39987 4.48472 4.63049 4.65375 4.66777 4.71613 4.74221 4.75121 4.82796 4.86641 4.88256 4.92958 4.96328 4.97343 5.06323 5.13612 5.18752 5.25561 5.29536 5.30239 5.53205 5.59895 5.67094 5.87301 6.09286 6.35484 6.73461 7.06969 7.15502 7.16781 7.84294 8.47412 9.28950 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028177 B = 0.002446 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.483861 B =11444.687642 C =11888.175374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 C -0.155 4.155 4 N -0.593 5.593 5 C 0.510 3.490 6 O -0.572 6.572 7 C -0.155 4.155 8 C -0.107 4.107 9 C 0.118 3.882 10 H 0.144 0.856 11 C 0.517 3.483 12 O -0.580 6.580 13 N -0.632 5.632 14 C 0.121 3.879 15 C -0.098 4.098 16 C 0.131 3.869 17 C -0.101 4.101 18 C 0.155 3.845 19 N -0.627 5.627 20 C -0.229 4.229 21 H 0.086 0.914 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.975 3.025 25 H -0.264 1.264 26 H -0.299 1.299 27 H -0.293 1.293 28 C 0.148 3.852 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.069 0.931 47 H -0.024 1.024 48 H 0.244 0.756 49 H 0.051 0.949 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 18.599 11.113 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 C -0.213 4.213 4 N -0.325 5.325 5 C 0.300 3.700 6 O -0.451 6.451 7 C -0.195 4.195 8 C -0.144 4.144 9 C 0.010 3.990 10 H 0.161 0.839 11 C 0.306 3.694 12 O -0.460 6.460 13 N -0.367 5.367 14 C -0.001 4.001 15 C -0.099 4.099 16 C 0.010 3.990 17 C -0.139 4.139 18 C 0.030 3.970 19 N -0.353 5.353 20 C -0.358 4.358 21 H 0.103 0.897 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.804 3.196 25 H -0.188 1.188 26 H -0.227 1.227 27 H -0.220 1.220 28 C 0.023 3.977 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.087 0.913 47 H -0.006 1.006 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.422 19.254 10.993 22.303 hybrid contribution -0.711 -1.490 -0.774 1.823 sum 1.711 17.764 10.219 20.565 Atomic orbital electron populations 1.22090 0.95933 1.01669 1.02173 1.21031 0.93946 0.93639 0.86577 1.22085 1.01882 0.94471 1.02836 1.48287 1.51110 1.26685 1.06452 1.21492 0.79403 0.84450 0.84653 1.90659 1.41077 1.31285 1.82109 1.22433 0.99742 0.98780 0.98520 1.22745 0.99431 1.03979 0.88274 1.21812 0.92100 0.81596 1.03484 0.83865 1.21272 0.87876 0.84204 0.76094 1.90707 1.17394 1.85935 1.51972 1.50151 1.12364 1.04851 1.69312 1.23029 0.96553 0.80467 1.00096 1.22334 0.95425 0.95478 0.96679 1.23385 0.83218 0.91056 1.01380 1.22444 1.01526 0.96627 0.93304 1.21706 0.94602 0.87688 0.92993 1.44898 1.73244 1.12844 1.04336 1.19508 1.32504 0.89687 0.94076 0.89664 1.25590 1.02751 1.02371 0.95603 1.70070 1.54152 1.37287 0.98681 0.85043 0.76959 0.79717 0.77838 1.18795 1.22672 1.22016 1.21207 0.98484 0.89356 0.88701 0.90242 0.93637 0.93685 0.88627 0.91025 0.89913 0.93407 0.85546 0.88422 0.87183 0.84974 0.92681 0.88605 0.85804 0.86565 0.91739 0.89978 0.91299 1.00634 0.94634 0.93080 0.95393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.20 71.98 0.66 -3.34 16 2 C 0.15 3.07 3.33 44.99 0.15 3.22 16 3 C -0.15 -2.64 9.20 71.98 0.66 -1.98 16 4 N -0.59 -12.11 2.02 -774.53 -1.57 -13.68 16 5 C 0.51 11.89 7.41 87.90 0.65 12.54 16 6 O -0.57 -17.86 15.12 -3.04 -0.05 -17.90 16 7 C -0.15 -2.16 6.85 30.59 0.21 -1.95 16 8 C -0.11 -0.85 6.47 31.65 0.20 -0.65 16 9 C 0.12 1.74 3.24 44.70 0.14 1.88 16 10 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 11 C 0.52 11.93 7.36 87.65 0.65 12.57 16 12 O -0.58 -19.38 15.80 -3.03 -0.05 -19.43 16 13 N -0.63 -13.09 3.48 -859.84 -2.99 -16.08 16 14 C 0.12 3.19 8.08 85.97 0.69 3.88 16 15 C -0.10 -2.54 0.97 -52.11 -0.05 -2.59 16 16 C 0.13 1.90 6.88 85.97 0.59 2.49 16 17 C -0.10 -3.21 6.42 31.62 0.20 -3.01 16 18 C 0.16 7.19 5.90 86.92 0.51 7.70 16 19 N -0.63 -29.49 3.41 -692.88 -2.36 -31.85 16 20 C -0.23 -12.02 10.28 84.03 0.86 -11.16 16 21 H 0.09 4.24 7.83 -2.91 -0.02 4.22 16 22 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 23 N -0.95 -55.44 10.09 21.65 0.22 -55.22 16 24 Si 0.98 44.20 29.55 68.60 2.03 46.23 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 C 0.15 4.93 6.75 86.22 0.58 5.51 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.04 1.37 6.82 -2.39 -0.02 1.36 16 31 H 0.04 1.30 6.77 -2.39 -0.02 1.28 16 32 H 0.10 1.73 8.07 -2.39 -0.02 1.72 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.06 6.80 -2.39 -0.02 1.04 16 36 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 0.64 6.82 -2.39 -0.02 0.63 16 39 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.05 1.75 8.12 -2.39 -0.02 1.73 16 41 H 0.10 2.32 8.00 -2.39 -0.02 2.30 16 42 H 0.12 1.09 8.06 -2.39 -0.02 1.07 16 43 H 0.12 1.09 8.12 -2.39 -0.02 1.07 16 44 H 0.06 1.99 8.06 -2.39 -0.02 1.97 16 45 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.07 3.72 5.89 -2.39 -0.01 3.70 16 47 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 48 H 0.24 13.91 8.31 -92.70 -0.77 13.14 16 49 H 0.05 1.53 8.09 -2.39 -0.02 1.52 16 50 H 0.03 0.93 7.86 -2.39 -0.02 0.92 16 Total: -1.00 -79.03 391.50 3.34 -75.69 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.92 Total: 10.53 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 7.19 Total: 21.72 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -6.70 Total: -116.84 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.09 Total: -37.33 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -79.03 3.34 -75.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072912744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.722 kcal (2) G-P(sol) polarization free energy of solvation -79.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds