Wall clock time and date at job start Tue Mar 31 2020 19:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 N 1.46505 * 109.47057 * 179.97438 * 3 2 1 5 5 C 1.46764 * 124.34819 * 269.99668 * 4 3 2 6 6 C 1.54480 * 105.47106 * 162.96126 * 5 4 3 7 7 H 1.09002 * 110.97088 * 267.29706 * 6 5 4 8 8 C 1.50705 * 110.99864 * 143.54649 * 6 5 4 9 9 O 1.21279 * 119.99789 * 3.11206 * 8 6 5 10 10 N 1.34771 * 119.99889 * 183.11036 * 8 6 5 11 11 C 1.47396 * 135.85505 * 359.63905 * 10 8 6 12 12 C 1.52064 * 87.41045 * 154.38565 * 11 10 8 13 13 C 1.47392 * 135.85332 * 180.02562 * 10 8 6 14 14 C 1.53513 * 117.21176 * 267.27491 * 12 11 10 15 15 C 1.54631 * 102.70878 * 262.93464 * 14 12 11 16 16 N 1.47144 * 107.37234 * 339.38343 * 15 14 12 17 17 C 1.36942 * 125.58261 * 179.13634 * 16 15 14 18 18 H 1.07995 * 120.00658 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99437 * 359.97139 * 17 16 15 20 20 N 1.31620 * 120.00345 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46956 * 59.99886 * 21 19 17 23 23 H 1.48498 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46989 * 299.99871 * 21 19 17 25 25 C 1.47758 * 108.84440 * 359.08836 * 16 15 14 26 26 C 1.54632 * 101.76683 * 25.41714 * 6 5 4 27 27 C 1.34422 * 124.34955 * 89.96933 * 4 3 2 28 28 O 1.21279 * 124.94127 * 0.39841 * 27 4 3 29 29 H 1.09007 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47082 * 300.00204 * 1 2 3 31 31 H 1.08998 * 109.47080 * 60.00447 * 1 2 3 32 32 H 1.08995 * 109.47218 * 239.99566 * 2 1 3 33 33 H 1.09004 * 109.47037 * 120.00001 * 2 1 3 34 34 H 1.08995 * 109.47477 * 59.99724 * 3 2 1 35 35 H 1.08998 * 109.46826 * 299.99708 * 3 2 1 36 36 H 1.08996 * 110.24520 * 43.96308 * 5 4 3 37 37 H 1.08992 * 110.24373 * 281.96018 * 5 4 3 38 38 H 1.09005 * 113.53890 * 268.99302 * 11 10 8 39 39 H 1.09001 * 113.54261 * 39.66863 * 11 10 8 40 40 H 1.09003 * 113.54460 * 320.32157 * 13 10 8 41 41 H 1.08998 * 113.54409 * 90.93109 * 13 10 8 42 42 H 1.09007 * 110.75978 * 21.23861 * 14 12 11 43 43 H 1.08994 * 110.76776 * 144.62534 * 14 12 11 44 44 H 1.08995 * 109.86789 * 98.83079 * 15 14 12 45 45 H 1.08996 * 109.86421 * 219.93622 * 15 14 12 46 46 H 0.96997 * 120.00119 * 179.97438 * 20 19 17 47 47 H 1.09006 * 110.40406 * 263.50756 * 25 16 15 48 48 H 1.08992 * 110.41036 * 141.07891 * 25 16 15 49 49 H 1.08999 * 110.48384 * 93.87777 * 26 6 5 50 50 H 1.08996 * 110.48487 * 216.52569 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3326 1.4428 1.2127 6 6 5.7406 1.0064 0.7504 7 1 5.8661 -0.0720 0.8470 8 6 6.8117 1.7418 1.5140 9 8 6.5051 2.5103 2.4008 10 7 8.1102 1.5455 1.2115 11 6 8.8582 0.7218 0.2446 12 6 9.9740 1.7509 0.3359 13 6 9.4008 2.0558 1.7080 14 6 9.9641 2.8902 -0.6929 15 6 10.9539 2.3859 -1.7685 16 7 11.8061 1.3657 -1.1376 17 6 12.8018 0.6624 -1.7614 18 1 13.3743 -0.0683 -1.2094 19 6 13.0753 0.8886 -3.1034 20 7 12.3780 1.7795 -3.7761 21 14 14.4331 -0.0712 -3.9546 22 1 14.1278 -1.5231 -3.8905 23 1 14.5243 0.3537 -5.3746 24 1 15.7268 0.1931 -3.2753 25 6 11.4125 1.2251 0.2797 26 6 5.7301 1.4314 -0.7363 27 6 4.2640 1.4418 -1.1089 28 8 3.8356 1.4479 -2.2435 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9374 0.7330 1.9394 37 1 4.3702 2.4433 1.6434 38 1 9.1371 -0.2583 0.6317 39 1 8.3897 0.6711 -0.7383 40 1 9.3856 3.1192 1.9470 41 1 9.8309 1.4498 2.5053 42 1 8.9677 3.0206 -1.1155 43 1 10.3195 3.8182 -0.2453 44 1 10.4043 1.9463 -2.6008 45 1 11.5680 3.2134 -2.1238 46 1 12.5694 1.9378 -4.7137 47 1 12.0620 1.8264 0.9159 48 1 11.4466 0.1784 0.5816 49 1 6.1601 2.4264 -0.8516 50 1 6.2730 0.7073 -1.3438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073021636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:40 Heat of formation + Delta-G solvation = -3.408015 kcal Electronic energy + Delta-G solvation = -29664.500273 eV Core-core repulsion = 25693.731851 eV Total energy + Delta-G solvation = -3970.768422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.21060 -40.33467 -38.45832 -36.54449 -35.73069 -35.06182 -32.37064 -31.80917 -29.61434 -28.78383 -27.94075 -26.77964 -26.05816 -25.70548 -23.93432 -22.68219 -22.10142 -20.33934 -19.68126 -19.33948 -18.38676 -17.47020 -17.07289 -16.77008 -16.28071 -16.04318 -15.50338 -15.22786 -14.85066 -14.72586 -14.37630 -14.26762 -13.98914 -13.94370 -13.83903 -13.26431 -13.06352 -12.90096 -12.49892 -12.47289 -12.34184 -12.18634 -12.05113 -11.89161 -11.73507 -11.71395 -11.51875 -11.07638 -11.05377 -10.95006 -10.71266 -10.51652 -10.30522 -10.17311 -10.06462 -9.91487 -9.71995 -9.61861 -8.96918 -8.67778 -8.63328 -6.88354 -5.74789 -3.08915 2.36841 2.46686 2.58499 2.85467 3.38409 3.43020 3.44533 3.93835 4.06246 4.31437 4.44187 4.55901 4.57076 4.60503 4.67426 4.81545 4.88987 4.89465 5.06988 5.16337 5.19400 5.27155 5.30592 5.39111 5.43158 5.46364 5.49279 5.59237 5.60425 5.64117 5.65221 5.71588 5.74507 5.77198 5.84178 5.87425 6.09203 6.17267 6.27663 6.40446 6.44994 6.59857 6.64662 6.84148 7.51218 7.56929 7.69201 7.78610 7.95263 8.02588 8.21052 9.17656 9.77703 10.42675 11.36598 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.002571 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.915280 B =10888.906743 C =11959.095073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.126 3.874 4 N -0.622 5.622 5 C 0.119 3.881 6 C -0.118 4.118 7 H 0.116 0.884 8 C 0.553 3.447 9 O -0.544 6.544 10 N -0.638 5.638 11 C 0.117 3.883 12 C -0.105 4.105 13 C 0.120 3.880 14 C -0.117 4.117 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.154 3.846 26 C -0.144 4.144 27 C 0.521 3.479 28 O -0.526 6.526 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.253 0.747 47 H 0.027 0.973 48 H 0.042 0.958 49 H 0.111 0.889 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 -2.401 11.824 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.356 5.356 5 C -0.004 4.004 6 C -0.139 4.139 7 H 0.134 0.866 8 C 0.342 3.658 9 O -0.423 6.423 10 N -0.372 5.372 11 C -0.005 4.005 12 C -0.107 4.107 13 C -0.003 4.003 14 C -0.155 4.155 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.027 3.973 26 C -0.184 4.184 27 C 0.309 3.691 28 O -0.402 6.402 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.129 0.871 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.812 -1.948 11.506 22.138 hybrid contribution 0.798 -0.631 -0.408 1.096 sum -18.014 -2.580 11.097 21.315 Atomic orbital electron populations 1.21693 0.94929 1.02090 1.02011 1.21922 0.96322 0.97085 1.02739 1.21450 0.77644 0.97151 1.03328 1.48347 1.06288 1.73755 1.07208 1.21957 0.87785 1.03725 0.86929 1.22153 0.94044 1.02239 0.95494 0.86576 1.19507 0.81322 0.82070 0.82908 1.90703 1.81212 1.37908 1.32434 1.49783 1.03688 1.45294 1.38481 1.22987 0.89271 0.95251 0.92998 1.22184 0.96346 0.97336 0.94803 1.22810 0.79778 1.00649 0.97038 1.22474 1.00527 0.95815 0.96718 1.21227 0.90102 0.91787 0.91427 1.44530 1.39344 1.44854 1.04376 1.18980 1.08620 1.15607 0.92644 0.90459 1.24800 0.99616 0.99277 0.96626 1.69939 1.41988 1.35941 1.08957 0.86209 0.81573 0.79324 0.78688 1.21166 1.21628 1.21195 1.21135 0.89815 0.97751 0.88620 1.22359 0.95408 1.05800 0.94875 1.20784 0.88895 0.75016 0.84408 1.90742 1.78487 1.50027 1.20981 0.92355 0.92543 0.92414 0.91455 0.91709 0.90229 0.89881 0.89847 0.89016 0.89288 0.89885 0.90341 0.89624 0.92107 0.91773 0.93442 0.93794 0.93632 0.95586 0.93939 0.87129 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.14 -1.06 6.26 -26.73 -0.17 -1.23 16 3 C 0.13 1.05 5.93 -4.04 -0.02 1.03 16 4 N -0.62 -6.29 2.93 -172.42 -0.51 -6.80 16 5 C 0.12 1.08 6.69 -3.12 -0.02 1.06 16 6 C -0.12 -1.14 3.37 -90.13 -0.30 -1.44 16 7 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 8 C 0.55 6.96 7.31 -10.99 -0.08 6.88 16 9 O -0.54 -8.48 16.31 5.56 0.09 -8.39 16 10 N -0.64 -7.96 3.69 -185.71 -0.68 -8.65 16 11 C 0.12 1.47 7.61 -7.33 -0.06 1.42 16 12 C -0.10 -1.55 1.06 -155.21 -0.16 -1.71 16 13 C 0.12 1.51 8.03 -7.47 -0.06 1.45 16 14 C -0.12 -1.98 6.41 -25.61 -0.16 -2.14 16 15 C 0.18 4.04 5.39 -2.83 -0.02 4.02 16 16 N -0.60 -14.20 3.41 -170.54 -0.58 -14.78 16 17 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 18 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -26.17 10.30 55.49 0.57 -25.60 16 21 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.15 2.76 6.70 -3.22 -0.02 2.74 16 26 C -0.14 -1.56 5.84 -26.74 -0.16 -1.72 16 27 C 0.52 6.63 8.02 -10.86 -0.09 6.55 16 28 O -0.53 -8.71 17.59 5.56 0.10 -8.61 16 29 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.94 7.01 -51.93 -0.36 0.58 16 38 H 0.09 1.01 8.06 -51.93 -0.42 0.59 16 39 H 0.08 1.06 7.09 -51.93 -0.37 0.69 16 40 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.96 8.07 -51.92 -0.42 0.54 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 45 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.04 0.72 8.00 -51.93 -0.42 0.31 16 49 H 0.11 1.27 7.89 -51.93 -0.41 0.86 16 50 H 0.11 1.17 7.51 -51.93 -0.39 0.78 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -32.70 399.66 -9.80 -42.51 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.59 Total: -1.99 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -1.20 Total: 9.88 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.20 Total: -55.83 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.19 Total: -17.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.70 -9.80 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073021636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.097 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds