Wall clock time and date at job start Tue Mar 31 2020 19:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 N 1.46505 * 109.47057 * 179.97438 * 3 2 1 5 5 C 1.46764 * 124.34819 * 269.99668 * 4 3 2 6 6 C 1.54480 * 105.47106 * 162.96126 * 5 4 3 7 7 H 1.09002 * 110.97088 * 267.29706 * 6 5 4 8 8 C 1.50705 * 110.99864 * 143.54649 * 6 5 4 9 9 O 1.21279 * 119.99789 * 3.11206 * 8 6 5 10 10 N 1.34771 * 119.99889 * 183.11036 * 8 6 5 11 11 C 1.47396 * 135.85505 * 359.63905 * 10 8 6 12 12 C 1.52064 * 87.41045 * 154.38565 * 11 10 8 13 13 C 1.47392 * 135.85332 * 180.02562 * 10 8 6 14 14 C 1.53513 * 117.21176 * 267.27491 * 12 11 10 15 15 C 1.54631 * 102.70878 * 262.93464 * 14 12 11 16 16 N 1.47144 * 107.37234 * 339.38343 * 15 14 12 17 17 C 1.36942 * 125.58261 * 179.13634 * 16 15 14 18 18 H 1.07995 * 120.00658 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99437 * 359.97139 * 17 16 15 20 20 N 1.31620 * 120.00345 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46956 * 59.99886 * 21 19 17 23 23 H 1.48498 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46989 * 299.99871 * 21 19 17 25 25 C 1.47758 * 108.84440 * 359.08836 * 16 15 14 26 26 C 1.54632 * 101.76683 * 25.41714 * 6 5 4 27 27 C 1.34422 * 124.34955 * 89.96933 * 4 3 2 28 28 O 1.21279 * 124.94127 * 0.39841 * 27 4 3 29 29 H 1.09007 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47082 * 300.00204 * 1 2 3 31 31 H 1.08998 * 109.47080 * 60.00447 * 1 2 3 32 32 H 1.08995 * 109.47218 * 239.99566 * 2 1 3 33 33 H 1.09004 * 109.47037 * 120.00001 * 2 1 3 34 34 H 1.08995 * 109.47477 * 59.99724 * 3 2 1 35 35 H 1.08998 * 109.46826 * 299.99708 * 3 2 1 36 36 H 1.08996 * 110.24520 * 43.96308 * 5 4 3 37 37 H 1.08992 * 110.24373 * 281.96018 * 5 4 3 38 38 H 1.09005 * 113.53890 * 268.99302 * 11 10 8 39 39 H 1.09001 * 113.54261 * 39.66863 * 11 10 8 40 40 H 1.09003 * 113.54460 * 320.32157 * 13 10 8 41 41 H 1.08998 * 113.54409 * 90.93109 * 13 10 8 42 42 H 1.09007 * 110.75978 * 21.23861 * 14 12 11 43 43 H 1.08994 * 110.76776 * 144.62534 * 14 12 11 44 44 H 1.08995 * 109.86789 * 98.83079 * 15 14 12 45 45 H 1.08996 * 109.86421 * 219.93622 * 15 14 12 46 46 H 0.96997 * 120.00119 * 179.97438 * 20 19 17 47 47 H 1.09006 * 110.40406 * 263.50756 * 25 16 15 48 48 H 1.08992 * 110.41036 * 141.07891 * 25 16 15 49 49 H 1.08999 * 110.48384 * 93.87777 * 26 6 5 50 50 H 1.08996 * 110.48487 * 216.52569 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3326 1.4428 1.2127 6 6 5.7406 1.0064 0.7504 7 1 5.8661 -0.0720 0.8470 8 6 6.8117 1.7418 1.5140 9 8 6.5051 2.5103 2.4008 10 7 8.1102 1.5455 1.2115 11 6 8.8582 0.7218 0.2446 12 6 9.9740 1.7509 0.3359 13 6 9.4008 2.0558 1.7080 14 6 9.9641 2.8902 -0.6929 15 6 10.9539 2.3859 -1.7685 16 7 11.8061 1.3657 -1.1376 17 6 12.8018 0.6624 -1.7614 18 1 13.3743 -0.0683 -1.2094 19 6 13.0753 0.8886 -3.1034 20 7 12.3780 1.7795 -3.7761 21 14 14.4331 -0.0712 -3.9546 22 1 14.1278 -1.5231 -3.8905 23 1 14.5243 0.3537 -5.3746 24 1 15.7268 0.1931 -3.2753 25 6 11.4125 1.2251 0.2797 26 6 5.7301 1.4314 -0.7363 27 6 4.2640 1.4418 -1.1089 28 8 3.8356 1.4479 -2.2435 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9374 0.7330 1.9394 37 1 4.3702 2.4433 1.6434 38 1 9.1371 -0.2583 0.6317 39 1 8.3897 0.6711 -0.7383 40 1 9.3856 3.1192 1.9470 41 1 9.8309 1.4498 2.5053 42 1 8.9677 3.0206 -1.1155 43 1 10.3195 3.8182 -0.2453 44 1 10.4043 1.9463 -2.6008 45 1 11.5680 3.2134 -2.1238 46 1 12.5694 1.9378 -4.7137 47 1 12.0620 1.8264 0.9159 48 1 11.4466 0.1784 0.5816 49 1 6.1601 2.4264 -0.8516 50 1 6.2730 0.7073 -1.3438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073021636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:39 Heat of formation + Delta-G solvation = -23.583243 kcal Electronic energy + Delta-G solvation = -29665.375136 eV Core-core repulsion = 25693.731851 eV Total energy + Delta-G solvation = -3971.643286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20668 -41.37672 -39.58703 -37.56794 -37.23004 -35.77242 -34.07690 -32.69671 -31.16194 -30.19723 -28.82357 -27.75499 -27.19390 -26.85415 -25.51504 -23.62652 -22.74064 -22.09477 -20.57305 -20.40007 -19.61466 -18.56668 -18.35949 -17.95162 -17.31884 -16.99318 -16.67910 -16.49768 -16.22538 -15.65703 -15.58091 -15.56109 -15.27932 -14.82382 -14.70065 -14.24247 -14.19638 -13.96335 -13.75413 -13.65961 -13.55131 -13.26375 -13.10417 -12.87303 -12.85359 -12.70916 -12.54573 -12.45752 -12.21599 -12.19568 -12.05581 -11.87465 -11.78257 -11.67803 -11.63428 -11.17985 -11.14841 -10.73797 -10.63632 -9.81004 -9.70277 -8.82276 -7.79070 -5.13400 1.39859 1.49998 1.50288 1.52322 1.58473 1.67116 1.98995 2.54233 3.03387 3.24164 3.32866 3.42104 3.52754 3.65088 3.79920 3.86469 3.97358 4.01622 4.03524 4.10340 4.25535 4.32763 4.44999 4.46146 4.47759 4.57297 4.60733 4.62220 4.68522 4.71067 4.74799 4.80338 4.87877 4.90604 4.94158 4.99315 5.08400 5.14108 5.18188 5.21996 5.25028 5.32080 5.53301 5.53834 5.71537 5.84008 5.97802 6.25345 6.69528 7.00231 7.04973 7.16222 7.84588 8.48212 9.30996 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.002571 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.915280 B =10888.906743 C =11959.095073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.120 3.880 4 N -0.614 5.614 5 C 0.122 3.878 6 C -0.106 4.106 7 H 0.144 0.856 8 C 0.556 3.444 9 O -0.574 6.574 10 N -0.637 5.637 11 C 0.124 3.876 12 C -0.102 4.102 13 C 0.127 3.873 14 C -0.102 4.102 15 C 0.189 3.811 16 N -0.625 5.625 17 C -0.233 4.233 18 H 0.087 0.913 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.973 3.027 22 H -0.275 1.275 23 H -0.301 1.301 24 H -0.279 1.279 25 C 0.151 3.849 26 C -0.140 4.140 27 C 0.514 3.486 28 O -0.575 6.575 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.012 0.988 45 H 0.001 0.999 46 H 0.244 0.756 47 H 0.032 0.968 48 H 0.059 0.941 49 H 0.102 0.898 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.032 -3.969 14.683 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.346 5.346 5 C -0.001 4.001 6 C -0.127 4.127 7 H 0.162 0.838 8 C 0.346 3.654 9 O -0.454 6.454 10 N -0.370 5.370 11 C 0.002 3.998 12 C -0.103 4.103 13 C 0.005 3.995 14 C -0.141 4.141 15 C 0.064 3.936 16 N -0.352 5.352 17 C -0.362 4.362 18 H 0.105 0.895 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.802 3.198 22 H -0.201 1.201 23 H -0.228 1.228 24 H -0.205 1.205 25 C 0.026 3.974 26 C -0.180 4.180 27 C 0.302 3.698 28 O -0.455 6.455 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.019 0.981 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.120 0.880 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.649 -3.536 14.446 24.642 hybrid contribution 1.065 -0.103 -1.225 1.627 sum -18.583 -3.639 13.221 23.095 Atomic orbital electron populations 1.21680 0.93723 1.02593 1.02470 1.21854 0.97324 0.96085 1.02139 1.21647 0.76621 0.98043 1.03819 1.48467 1.07108 1.72138 1.06935 1.22047 0.87337 1.04074 0.86636 1.22153 0.93421 1.03404 0.93765 0.83816 1.19844 0.81481 0.81551 0.82553 1.90701 1.81562 1.39187 1.33932 1.49733 1.03832 1.45144 1.38292 1.23006 0.88023 0.95558 0.93250 1.22007 0.95257 0.97143 0.95942 1.22799 0.79515 1.01266 0.95905 1.22253 0.99227 0.96868 0.95712 1.20909 0.90134 0.90127 0.92431 1.44823 1.38934 1.44596 1.06826 1.19417 1.08768 1.15149 0.92870 0.89513 1.25598 1.02137 1.00727 0.97694 1.70175 1.43738 1.37834 1.08500 0.85222 0.79256 0.78403 0.76885 1.20109 1.22778 1.20499 1.21319 0.91630 0.99006 0.85461 1.22300 0.94219 1.05549 0.95970 1.21095 0.89885 0.74551 0.84252 1.90712 1.79361 1.52519 1.22893 0.91844 0.91063 0.93000 0.93818 0.90437 0.87653 0.91477 0.86949 0.89961 0.86974 0.90093 0.90447 0.87093 0.91058 0.91072 0.96973 0.98119 0.94699 0.94994 0.92262 0.88003 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.14 -1.81 6.26 30.59 0.19 -1.62 16 3 C 0.12 1.83 5.93 86.38 0.51 2.34 16 4 N -0.61 -11.51 2.93 -817.99 -2.40 -13.91 16 5 C 0.12 1.85 6.69 86.83 0.58 2.43 16 6 C -0.11 -1.74 3.37 -10.48 -0.04 -1.78 16 7 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 8 C 0.56 12.36 7.31 87.66 0.64 13.00 16 9 O -0.57 -16.41 16.31 -3.03 -0.05 -16.45 16 10 N -0.64 -13.83 3.69 -859.85 -3.17 -17.00 16 11 C 0.12 2.73 7.61 83.76 0.64 3.37 16 12 C -0.10 -2.77 1.06 -52.62 -0.06 -2.83 16 13 C 0.13 2.78 8.03 83.67 0.67 3.45 16 14 C -0.10 -3.40 6.41 31.32 0.20 -3.20 16 15 C 0.19 8.80 5.39 86.81 0.47 9.27 16 16 N -0.63 -29.40 3.41 -693.45 -2.36 -31.76 16 17 C -0.23 -12.26 10.28 84.03 0.86 -11.40 16 18 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 20 N -0.95 -56.39 10.30 21.65 0.22 -56.16 16 21 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 C 0.15 5.12 6.70 86.23 0.58 5.69 16 26 C -0.14 -2.86 5.84 30.59 0.18 -2.69 16 27 C 0.51 12.90 8.02 87.90 0.71 13.60 16 28 O -0.57 -19.59 17.59 -3.03 -0.05 -19.64 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.26 7.93 -2.39 -0.02 1.24 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.49 7.01 -2.39 -0.02 1.48 16 38 H 0.11 2.05 8.06 -2.38 -0.02 2.03 16 39 H 0.08 1.87 7.09 -2.39 -0.02 1.86 16 40 H 0.08 1.76 8.13 -2.39 -0.02 1.74 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.01 0.64 7.39 -2.39 -0.02 0.62 16 45 H 0.00 0.03 7.49 -2.39 -0.02 0.01 16 46 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 49 H 0.10 2.28 7.89 -2.39 -0.02 2.26 16 50 H 0.12 2.30 7.51 -2.39 -0.02 2.28 16 Total: -1.00 -74.13 399.66 2.44 -71.69 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.91 Total: 11.06 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: 7.32 Total: 25.52 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -7.71 Total: -118.83 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.10 Total: -36.10 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.13 2.44 -71.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073021636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.107 kcal (2) G-P(sol) polarization free energy of solvation -74.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds