Wall clock time and date at job start Tue Mar 31 2020 18:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47516 * 24.98576 * 3 2 1 5 5 C 1.48557 * 110.99957 * 285.42183 * 4 3 2 6 6 C 1.54376 * 104.59492 * 200.95785 * 5 4 3 7 7 C 1.54256 * 105.06068 * 23.85157 * 6 5 4 8 8 C 1.48550 * 111.00388 * 169.99959 * 4 3 2 9 9 H 1.09001 * 110.41126 * 40.25893 * 8 4 3 10 10 C 1.50705 * 110.41330 * 277.93803 * 8 4 3 11 11 O 1.21282 * 119.99795 * 359.97438 * 10 8 4 12 12 N 1.34774 * 120.00150 * 180.02562 * 10 8 4 13 13 C 1.46502 * 119.99960 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47172 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.40319 * 304.83761 * 14 13 12 16 16 C 1.54293 * 109.40210 * 185.00054 * 14 13 12 17 17 N 1.48184 * 110.68921 * 200.49297 * 16 14 13 18 18 C 1.36939 * 118.51120 * 138.77472 * 17 16 14 19 19 H 1.07998 * 119.99518 * 206.11790 * 18 17 16 20 20 C 1.38813 * 120.00040 * 26.12170 * 18 17 16 21 21 N 1.31622 * 120.00077 * 15.51068 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 195.50480 * 20 18 17 23 23 H 1.48507 * 109.46863 * 60.00470 * 22 20 18 24 24 H 1.48494 * 109.47129 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47613 * 300.00657 * 22 20 18 26 26 C 1.44460 * 122.97440 * 318.79381 * 17 16 14 27 27 C 1.54877 * 109.32638 * 88.91723 * 26 17 16 28 28 C 1.47687 * 109.67425 * 290.09887 * 27 26 17 29 29 O 1.40523 * 109.40339 * 64.59401 * 14 13 12 30 30 H 4.40893 * 5.52167 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.46933 * 144.98408 * 3 2 1 32 32 H 1.09001 * 109.47518 * 264.98445 * 3 2 1 33 33 H 1.09003 * 110.41186 * 319.73409 * 5 4 3 34 34 H 1.08996 * 110.42106 * 82.17603 * 5 4 3 35 35 H 1.08998 * 110.32378 * 264.95034 * 6 5 4 36 36 H 1.08997 * 110.32602 * 142.74684 * 6 5 4 37 37 H 1.09006 * 110.32261 * 241.10443 * 7 6 5 38 38 H 1.09001 * 110.32616 * 118.89860 * 7 6 5 39 39 H 0.96995 * 120.00269 * 359.97438 * 12 10 8 40 40 H 1.08992 * 109.46910 * 300.00338 * 13 12 10 41 41 H 1.09008 * 109.47120 * 59.99692 * 13 12 10 42 42 H 1.08998 * 109.23653 * 320.80057 * 16 14 13 43 43 H 1.08996 * 109.23358 * 80.18609 * 16 14 13 44 44 H 0.96990 * 119.99816 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49573 * 208.87192 * 26 17 16 46 46 H 1.09000 * 109.49456 * 328.92984 * 26 17 16 47 47 H 1.08989 * 109.43811 * 50.16361 * 27 26 17 48 48 H 1.08995 * 109.43306 * 170.04022 * 27 26 17 49 49 H 1.09011 * 108.64107 * 181.88188 * 28 27 26 50 50 H 1.08995 * 108.65156 * 299.85784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1363 -1.2545 -0.5850 5 6 2.9666 -2.3857 0.3629 6 6 3.9677 -3.4550 -0.1244 7 6 5.0432 -2.6713 -0.9045 8 6 4.6013 -1.1944 -0.8230 9 1 5.1009 -0.6933 0.0061 10 6 4.8946 -0.4832 -2.1189 11 8 3.9834 -0.0583 -2.7971 12 7 6.1695 -0.3202 -2.5247 13 6 6.4545 0.3706 -3.7847 14 6 7.9673 0.4204 -4.0082 15 1 8.4460 0.8808 -3.1440 16 6 8.2719 1.2561 -5.2689 17 7 9.6192 0.9359 -5.7964 18 6 9.7806 0.8224 -7.1515 19 1 10.5730 0.2070 -7.5511 20 6 8.9258 1.4983 -8.0113 21 7 8.1682 2.4729 -7.5545 22 14 8.8509 1.0249 -9.8168 23 1 8.4337 -0.3951 -9.9392 24 1 7.8675 1.8911 -10.5152 25 1 10.1912 1.2017 -10.4310 26 6 10.7698 0.7376 -4.9458 27 6 10.8557 -0.7544 -4.5392 28 6 9.7541 -1.0811 -3.6115 29 8 8.4583 -0.8862 -4.1711 30 1 -1.0499 -0.0004 0.0000 31 1 3.0088 0.8424 -0.5897 32 1 3.0093 0.0907 1.0237 33 1 3.2103 -2.0711 1.3777 34 1 1.9477 -2.7702 0.3176 35 1 3.4695 -4.1693 -0.7799 36 1 4.4160 -3.9692 0.7257 37 1 5.0729 -3.0009 -1.9431 38 1 6.0195 -2.8008 -0.4373 39 1 6.8983 -0.6604 -1.9825 40 1 5.9826 -0.1657 -4.6079 41 1 6.0606 1.3861 -3.7395 42 1 7.5260 1.0381 -6.0332 43 1 8.2277 2.3156 -5.0167 44 1 7.5713 2.9454 -8.1554 45 1 11.6739 1.0203 -5.4851 46 1 10.6719 1.3536 -4.0519 47 1 10.7771 -1.3780 -5.4296 48 1 11.8108 -0.9422 -4.0487 49 1 9.8500 -2.1244 -3.3103 50 1 9.8470 -0.4536 -2.7252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073641809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:23 Heat of formation + Delta-G solvation = 15.793978 kcal Electronic energy + Delta-G solvation = -29791.615310 eV Core-core repulsion = 25821.679548 eV Total energy + Delta-G solvation = -3969.935761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.32978 -38.99435 -37.96920 -35.14362 -34.61709 -34.22475 -32.57357 -31.42516 -31.14932 -29.90220 -28.44554 -26.40072 -25.57358 -25.23589 -23.06057 -21.98052 -21.36683 -20.94837 -20.09630 -19.53333 -18.39402 -17.45597 -16.91562 -16.40180 -16.24731 -15.85337 -15.29062 -15.11843 -14.68179 -14.59800 -14.51436 -14.41009 -13.97656 -13.61972 -13.28309 -12.98689 -12.89762 -12.67608 -12.55688 -12.44417 -12.32467 -12.12073 -11.88172 -11.68576 -11.50210 -11.13476 -10.93228 -10.84205 -10.72171 -10.59653 -10.58736 -10.27858 -10.22253 -10.02112 -9.90794 -9.72756 -9.61431 -8.90504 -8.81290 -8.75039 -8.38906 -6.68977 -5.76749 -3.19672 2.50739 2.74126 2.77187 3.17571 3.41539 3.47926 3.49595 3.92143 4.18751 4.26779 4.29556 4.45879 4.52840 4.65489 4.83065 4.91189 5.05356 5.14666 5.18452 5.27647 5.31588 5.39231 5.45637 5.49826 5.53761 5.59367 5.61937 5.74906 5.75959 5.82363 5.86867 5.89371 6.02577 6.12018 6.22987 6.32633 6.37378 6.44153 6.48214 6.61358 6.67845 6.76057 6.96786 7.18260 7.50981 7.58489 7.67016 7.82772 7.97076 8.40683 8.47672 9.23010 9.89660 10.33534 11.31253 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002707 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.866002 B =10342.477035 C =11400.656287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.153 3.847 4 N -0.483 5.483 5 C 0.033 3.967 6 C -0.122 4.122 7 C -0.114 4.114 8 C 0.044 3.956 9 H 0.078 0.922 10 C 0.516 3.484 11 O -0.519 6.519 12 N -0.722 5.722 13 C 0.126 3.874 14 C 0.057 3.943 15 H 0.046 0.954 16 C 0.166 3.834 17 N -0.585 5.585 18 C -0.256 4.256 19 H 0.064 0.936 20 C 0.005 3.995 21 N -0.906 5.906 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.157 3.843 27 C -0.184 4.184 28 C 0.079 3.921 29 O -0.359 6.359 30 H 0.217 0.783 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.397 0.603 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.255 0.745 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 -8.654 20.474 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.171 4.171 3 C 0.027 3.973 4 N -0.207 5.207 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.068 4.068 9 H 0.096 0.904 10 C 0.300 3.700 11 O -0.393 6.393 12 N -0.374 5.374 13 C 0.003 3.997 14 C -0.004 4.004 15 H 0.064 0.936 16 C 0.040 3.960 17 N -0.306 5.306 18 C -0.386 4.386 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.029 3.971 27 C -0.225 4.225 28 C 0.002 3.998 29 O -0.277 6.277 30 H 0.234 0.766 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.866 -8.406 19.285 22.129 hybrid contribution 0.715 -0.020 0.116 0.725 sum -6.151 -8.425 19.400 22.027 Atomic orbital electron populations 1.24825 0.95814 0.99898 1.01410 1.22648 0.93937 1.00695 0.99835 1.19162 0.85938 0.93852 0.98385 1.65019 1.11836 1.03166 1.40664 1.23202 1.00842 0.91643 0.93799 1.22291 0.95994 0.97729 1.00021 1.22266 0.98876 0.91532 1.02536 1.22625 0.90151 0.97789 0.96214 0.90416 1.20168 0.82868 0.79881 0.87039 1.90738 1.44518 1.48490 1.55597 1.45966 1.07271 1.59598 1.24575 1.21562 0.95217 0.97577 0.85370 1.23168 0.91767 0.85183 1.00241 0.93579 1.21626 0.88088 0.94241 0.92061 1.43569 1.02172 1.82169 1.02724 1.19124 1.15270 1.22522 0.81641 0.91840 1.25001 1.00358 0.95955 0.98018 1.70009 1.28539 1.21690 1.34808 0.86377 0.77362 0.78011 0.85043 1.21002 1.21618 1.20990 1.20664 0.91327 0.91538 0.93575 1.22303 0.96921 1.02630 1.00605 1.21283 0.84425 0.99626 0.94419 1.87427 1.30944 1.28675 1.80692 0.76640 0.87975 0.92299 0.93477 0.89665 0.90538 0.90833 0.89986 0.90173 0.77010 0.90473 0.90244 0.89791 0.94561 0.93522 0.93162 0.95406 0.91126 0.92411 0.91589 0.94854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 19.25 29.55 0.57 -1.54 16 2 C -0.17 -2.04 13.25 -37.12 -0.49 -2.54 16 3 C 0.15 1.70 5.13 -6.61 -0.03 1.66 16 4 N -0.48 -5.60 4.57 -226.99 -1.04 -6.63 16 5 C 0.03 0.28 6.10 -2.19 -0.01 0.27 16 6 C -0.12 -0.92 7.00 -25.35 -0.18 -1.10 16 7 C -0.11 -0.98 6.53 -25.35 -0.17 -1.15 16 8 C 0.04 0.46 2.67 -67.23 -0.18 0.28 16 9 H 0.08 0.63 8.00 -51.93 -0.42 0.22 16 10 C 0.52 7.41 6.78 -10.98 -0.07 7.33 16 11 O -0.52 -9.82 15.90 5.56 0.09 -9.73 16 12 N -0.72 -9.74 5.47 -60.29 -0.33 -10.07 16 13 C 0.13 2.13 5.24 -4.04 -0.02 2.11 16 14 C 0.06 1.01 2.35 -26.06 -0.06 0.95 16 15 H 0.05 0.75 7.20 -51.93 -0.37 0.37 16 16 C 0.17 3.84 4.50 -2.44 -0.01 3.83 16 17 N -0.59 -14.27 2.59 -171.48 -0.44 -14.72 16 18 C -0.26 -6.96 9.43 -15.06 -0.14 -7.11 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.01 0.14 4.88 -17.43 -0.09 0.06 16 21 N -0.91 -26.05 10.98 55.49 0.61 -25.44 16 22 Si 0.90 22.03 29.58 -169.99 -5.03 17.00 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.16 3.16 5.68 -4.14 -0.02 3.13 16 27 C -0.18 -3.10 6.03 -28.31 -0.17 -3.27 16 28 C 0.08 1.21 6.04 34.59 0.21 1.42 16 29 O -0.36 -6.59 9.76 -34.09 -0.33 -6.92 16 30 H 0.22 1.46 7.80 -54.10 -0.42 1.04 16 31 H 0.10 1.26 7.39 -51.93 -0.38 0.88 16 32 H 0.06 0.50 7.77 -51.93 -0.40 0.10 16 33 H 0.05 0.34 7.75 -51.93 -0.40 -0.06 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 4.32 8.46 -40.82 -0.35 3.98 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 42 H 0.08 2.22 6.24 -51.93 -0.32 1.90 16 43 H 0.04 0.90 8.02 -51.93 -0.42 0.48 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.05 1.02 7.97 -51.93 -0.41 0.61 16 46 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.07 1.36 8.14 -51.94 -0.42 0.94 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 50 H 0.03 0.45 7.26 -51.93 -0.38 0.07 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -33.40 400.30 -9.77 -43.18 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.46 Total: 2.95 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.87 Total: 4.35 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -1.20 Total: -56.86 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.24 Total: -16.65 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.40 -9.77 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073641809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.969 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds