Wall clock time and date at job start Tue Mar 31 2020 18:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47516 * 24.98576 * 3 2 1 5 5 C 1.48557 * 110.99957 * 285.42183 * 4 3 2 6 6 C 1.54376 * 104.59492 * 200.95785 * 5 4 3 7 7 C 1.54256 * 105.06068 * 23.85157 * 6 5 4 8 8 C 1.48550 * 111.00388 * 169.99959 * 4 3 2 9 9 H 1.09001 * 110.41126 * 40.25893 * 8 4 3 10 10 C 1.50705 * 110.41330 * 277.93803 * 8 4 3 11 11 O 1.21282 * 119.99795 * 359.97438 * 10 8 4 12 12 N 1.34774 * 120.00150 * 180.02562 * 10 8 4 13 13 C 1.46502 * 119.99960 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47172 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.40319 * 304.83761 * 14 13 12 16 16 C 1.54293 * 109.40210 * 185.00054 * 14 13 12 17 17 N 1.48184 * 110.68921 * 200.49297 * 16 14 13 18 18 C 1.36939 * 118.51120 * 138.77472 * 17 16 14 19 19 H 1.07998 * 119.99518 * 206.11790 * 18 17 16 20 20 C 1.38813 * 120.00040 * 26.12170 * 18 17 16 21 21 N 1.31622 * 120.00077 * 15.51068 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 195.50480 * 20 18 17 23 23 H 1.48507 * 109.46863 * 60.00470 * 22 20 18 24 24 H 1.48494 * 109.47129 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47613 * 300.00657 * 22 20 18 26 26 C 1.44460 * 122.97440 * 318.79381 * 17 16 14 27 27 C 1.54877 * 109.32638 * 88.91723 * 26 17 16 28 28 C 1.47687 * 109.67425 * 290.09887 * 27 26 17 29 29 O 1.40523 * 109.40339 * 64.59401 * 14 13 12 30 30 H 4.40893 * 5.52167 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.46933 * 144.98408 * 3 2 1 32 32 H 1.09001 * 109.47518 * 264.98445 * 3 2 1 33 33 H 1.09003 * 110.41186 * 319.73409 * 5 4 3 34 34 H 1.08996 * 110.42106 * 82.17603 * 5 4 3 35 35 H 1.08998 * 110.32378 * 264.95034 * 6 5 4 36 36 H 1.08997 * 110.32602 * 142.74684 * 6 5 4 37 37 H 1.09006 * 110.32261 * 241.10443 * 7 6 5 38 38 H 1.09001 * 110.32616 * 118.89860 * 7 6 5 39 39 H 0.96995 * 120.00269 * 359.97438 * 12 10 8 40 40 H 1.08992 * 109.46910 * 300.00338 * 13 12 10 41 41 H 1.09008 * 109.47120 * 59.99692 * 13 12 10 42 42 H 1.08998 * 109.23653 * 320.80057 * 16 14 13 43 43 H 1.08996 * 109.23358 * 80.18609 * 16 14 13 44 44 H 0.96990 * 119.99816 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49573 * 208.87192 * 26 17 16 46 46 H 1.09000 * 109.49456 * 328.92984 * 26 17 16 47 47 H 1.08989 * 109.43811 * 50.16361 * 27 26 17 48 48 H 1.08995 * 109.43306 * 170.04022 * 27 26 17 49 49 H 1.09011 * 108.64107 * 181.88188 * 28 27 26 50 50 H 1.08995 * 108.65156 * 299.85784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1363 -1.2545 -0.5850 5 6 2.9666 -2.3857 0.3629 6 6 3.9677 -3.4550 -0.1244 7 6 5.0432 -2.6713 -0.9045 8 6 4.6013 -1.1944 -0.8230 9 1 5.1009 -0.6933 0.0061 10 6 4.8946 -0.4832 -2.1189 11 8 3.9834 -0.0583 -2.7971 12 7 6.1695 -0.3202 -2.5247 13 6 6.4545 0.3706 -3.7847 14 6 7.9673 0.4204 -4.0082 15 1 8.4460 0.8808 -3.1440 16 6 8.2719 1.2561 -5.2689 17 7 9.6192 0.9359 -5.7964 18 6 9.7806 0.8224 -7.1515 19 1 10.5730 0.2070 -7.5511 20 6 8.9258 1.4983 -8.0113 21 7 8.1682 2.4729 -7.5545 22 14 8.8509 1.0249 -9.8168 23 1 8.4337 -0.3951 -9.9392 24 1 7.8675 1.8911 -10.5152 25 1 10.1912 1.2017 -10.4310 26 6 10.7698 0.7376 -4.9458 27 6 10.8557 -0.7544 -4.5392 28 6 9.7541 -1.0811 -3.6115 29 8 8.4583 -0.8862 -4.1711 30 1 -1.0499 -0.0004 0.0000 31 1 3.0088 0.8424 -0.5897 32 1 3.0093 0.0907 1.0237 33 1 3.2103 -2.0711 1.3777 34 1 1.9477 -2.7702 0.3176 35 1 3.4695 -4.1693 -0.7799 36 1 4.4160 -3.9692 0.7257 37 1 5.0729 -3.0009 -1.9431 38 1 6.0195 -2.8008 -0.4373 39 1 6.8983 -0.6604 -1.9825 40 1 5.9826 -0.1657 -4.6079 41 1 6.0606 1.3861 -3.7395 42 1 7.5260 1.0381 -6.0332 43 1 8.2277 2.3156 -5.0167 44 1 7.5713 2.9454 -8.1554 45 1 11.6739 1.0203 -5.4851 46 1 10.6719 1.3536 -4.0519 47 1 10.7771 -1.3780 -5.4296 48 1 11.8108 -0.9422 -4.0487 49 1 9.8500 -2.1244 -3.3103 50 1 9.8470 -0.4536 -2.7252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073641809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:22 Heat of formation + Delta-G solvation = -8.311128 kcal Electronic energy + Delta-G solvation = -29792.660585 eV Core-core repulsion = 25821.679548 eV Total energy + Delta-G solvation = -3970.981037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34628 -40.36145 -39.01696 -36.86928 -35.96591 -35.03756 -34.10261 -32.94619 -32.15310 -31.00188 -29.81272 -27.22359 -27.05720 -26.97724 -24.49992 -23.11009 -22.35731 -22.00296 -21.55461 -20.85501 -19.16173 -18.86648 -18.35351 -17.75217 -17.32824 -17.07365 -16.63749 -16.47243 -16.00430 -15.75736 -15.57602 -15.46962 -15.22864 -15.10226 -14.52763 -14.40569 -14.17998 -13.96563 -13.80065 -13.68230 -13.39870 -13.32011 -13.02122 -12.99669 -12.72919 -12.50934 -12.46586 -12.29655 -12.15785 -12.00204 -11.79488 -11.56427 -11.43635 -11.40438 -11.34015 -11.10028 -10.82802 -10.54802 -10.24509 -10.10362 -9.52380 -8.66986 -7.86101 -5.30741 1.42972 1.47306 1.52587 1.63516 1.70390 1.90428 2.09939 2.51142 2.94308 3.13283 3.27747 3.43253 3.57338 3.59526 3.69842 3.98140 4.03736 4.07740 4.15718 4.23655 4.26275 4.29218 4.32561 4.46956 4.48025 4.54305 4.60386 4.64377 4.70337 4.80720 4.88748 4.89940 4.90524 5.01936 5.07770 5.15641 5.16755 5.23647 5.24602 5.28367 5.43019 5.53648 5.61949 5.71422 5.73579 5.90184 6.39600 6.60272 6.61797 6.69782 7.17194 7.31288 7.93942 8.31168 9.18393 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002707 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.866002 B =10342.477035 C =11400.656287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.212 4.212 3 C 0.155 3.845 4 N -0.516 5.516 5 C 0.034 3.966 6 C -0.117 4.117 7 C -0.111 4.111 8 C 0.051 3.949 9 H 0.112 0.888 10 C 0.513 3.487 11 O -0.573 6.573 12 N -0.706 5.706 13 C 0.139 3.861 14 C 0.080 3.920 15 H 0.077 0.923 16 C 0.172 3.828 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.062 0.938 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.959 3.041 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.273 1.273 26 C 0.147 3.853 27 C -0.171 4.171 28 C 0.068 3.932 29 O -0.377 6.377 30 H 0.246 0.754 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.113 0.887 39 H 0.414 0.586 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.011 0.989 44 H 0.248 0.752 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.041 0.959 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -10.641 23.712 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.213 4.213 3 C 0.028 3.972 4 N -0.240 5.240 5 C -0.092 4.092 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.060 4.060 9 H 0.130 0.870 10 C 0.300 3.700 11 O -0.452 6.452 12 N -0.359 5.359 13 C 0.014 3.986 14 C 0.020 3.980 15 H 0.095 0.905 16 C 0.046 3.954 17 N -0.325 5.325 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.788 3.212 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.021 3.979 27 C -0.211 4.211 28 C -0.008 4.008 29 O -0.296 6.296 30 H 0.263 0.737 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.251 0.749 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.029 0.971 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.512 -10.436 22.574 25.473 hybrid contribution 0.345 0.593 -0.876 1.112 sum -5.167 -9.843 21.698 24.380 Atomic orbital electron populations 1.25669 0.96775 0.98566 1.00175 1.23217 0.94970 1.01989 1.01087 1.19143 0.85696 0.93074 0.99299 1.64919 1.12603 1.04071 1.42442 1.23234 1.00824 0.90897 0.94290 1.22301 0.95342 0.97139 1.00696 1.22317 1.00911 0.89981 1.01683 1.22651 0.90251 0.98732 0.94371 0.87036 1.21019 0.82078 0.78915 0.88007 1.90715 1.46098 1.50768 1.57581 1.45719 1.07963 1.58938 1.23259 1.21141 0.94426 0.96942 0.86127 1.22712 0.92303 0.84803 0.98203 0.90543 1.21371 0.86826 0.93972 0.93196 1.43816 1.03755 1.82477 1.02461 1.19404 1.14704 1.21482 0.83462 0.92063 1.25688 1.00797 0.96403 1.01575 1.70166 1.29404 1.22898 1.35547 0.85467 0.77466 0.77242 0.81063 1.21095 1.22121 1.19859 1.20923 0.89263 0.94313 0.93445 1.22153 0.99845 0.98869 1.00216 1.21583 0.82229 1.02311 0.94694 1.87434 1.32728 1.28072 1.81340 0.73747 0.90290 0.89652 0.91356 0.90582 0.91521 0.87877 0.92439 0.86821 0.74889 0.93863 0.91249 0.94179 0.97120 0.94313 0.94154 0.93538 0.94044 0.88465 0.88408 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.91 19.25 74.32 1.43 -2.47 16 2 C -0.21 -5.03 13.25 31.12 0.41 -4.62 16 3 C 0.15 3.34 5.13 84.50 0.43 3.77 16 4 N -0.52 -11.42 4.57 -872.08 -3.99 -15.41 16 5 C 0.03 0.52 6.10 86.45 0.53 1.05 16 6 C -0.12 -1.42 7.00 31.49 0.22 -1.20 16 7 C -0.11 -1.59 6.53 31.49 0.21 -1.38 16 8 C 0.05 0.97 2.67 44.32 0.12 1.09 16 9 H 0.11 1.37 8.00 -2.39 -0.02 1.36 16 10 C 0.51 14.59 6.78 87.66 0.59 15.19 16 11 O -0.57 -22.69 15.90 -3.04 -0.05 -22.74 16 12 N -0.71 -18.29 5.47 -463.05 -2.53 -20.82 16 13 C 0.14 4.80 5.24 86.38 0.45 5.25 16 14 C 0.08 2.82 2.35 31.03 0.07 2.89 16 15 H 0.08 2.25 7.20 -2.39 -0.02 2.24 16 16 C 0.17 8.27 4.50 86.49 0.39 8.66 16 17 N -0.60 -29.78 2.59 -696.45 -1.80 -31.58 16 18 C -0.26 -14.47 9.43 84.03 0.79 -13.68 16 19 H 0.06 3.36 7.88 -2.91 -0.02 3.34 16 20 C -0.05 -2.83 4.88 84.86 0.41 -2.42 16 21 N -0.93 -56.21 10.98 21.65 0.24 -55.97 16 22 Si 0.96 46.64 29.58 68.60 2.03 48.66 16 23 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 26 C 0.15 5.70 5.68 87.40 0.50 6.19 16 27 C -0.17 -5.24 6.03 29.57 0.18 -5.06 16 28 C 0.07 1.79 6.04 70.32 0.42 2.22 16 29 O -0.38 -13.14 9.76 -144.90 -1.41 -14.55 16 30 H 0.25 2.90 7.80 -4.42 -0.03 2.87 16 31 H 0.08 2.02 7.39 -2.39 -0.02 2.00 16 32 H 0.09 1.29 7.77 -2.39 -0.02 1.27 16 33 H 0.07 0.74 7.75 -2.39 -0.02 0.72 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 37 H 0.06 1.12 7.86 -2.38 -0.02 1.10 16 38 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.41 7.73 8.46 -92.71 -0.78 6.95 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 2.52 8.14 -2.38 -0.02 2.51 16 42 H 0.04 2.25 6.24 -2.39 -0.01 2.23 16 43 H 0.01 0.56 8.02 -2.39 -0.02 0.54 16 44 H 0.25 14.65 8.31 -92.72 -0.77 13.88 16 45 H 0.04 1.61 7.97 -2.39 -0.02 1.59 16 46 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 50 H 0.06 1.36 7.26 -2.39 -0.02 1.35 16 Total: -1.00 -78.67 400.30 -0.22 -78.89 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.13 Total: 18.05 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 7.16 Total: 15.47 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -8.09 Total: -123.79 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.46 Total: -37.29 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -78.67 -0.22 -78.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073641809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.582 kcal (2) G-P(sol) polarization free energy of solvation -78.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds