Wall clock time and date at job start Tue Mar 31 2020 18:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47109 * 104.70397 * 3 2 1 5 5 C 1.48554 * 111.00037 * 285.41279 * 4 3 2 6 6 C 1.54379 * 104.59720 * 200.95804 * 5 4 3 7 7 C 1.54260 * 105.05765 * 23.85589 * 6 5 4 8 8 C 1.48560 * 110.99756 * 169.99294 * 4 3 2 9 9 H 1.08996 * 110.51569 * 40.21577 * 8 4 3 10 10 C 1.50697 * 110.41648 * 277.81931 * 8 4 3 11 11 O 1.21284 * 119.99748 * 3.37287 * 10 8 4 12 12 N 1.34776 * 120.00603 * 183.37925 * 10 8 4 13 13 C 1.46499 * 120.00408 * 179.72442 * 12 10 8 14 14 C 1.52994 * 109.46983 * 180.27003 * 13 12 10 15 15 H 1.08999 * 108.57132 * 62.05594 * 14 13 12 16 16 C 1.46919 * 108.61785 * 179.97438 * 14 13 12 17 17 N 1.50121 * 106.77470 * 177.92319 * 16 14 13 18 18 C 1.36933 * 120.63400 * 111.33385 * 17 16 14 19 19 H 1.08000 * 120.00045 * 155.65989 * 18 17 16 20 20 C 1.38812 * 120.00168 * 335.65245 * 18 17 16 21 21 N 1.31613 * 119.99829 * 340.74287 * 20 18 17 22 22 Si 1.86805 * 120.00014 * 160.73275 * 20 18 17 23 23 H 1.48502 * 109.47139 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46823 * 120.00702 * 22 20 18 25 25 H 1.48496 * 109.47062 * 240.00481 * 22 20 18 26 26 C 1.43427 * 118.72780 * 291.34467 * 17 16 14 27 27 C 1.55328 * 116.23431 * 89.35956 * 26 17 16 28 28 C 1.55195 * 108.87640 * 319.46054 * 27 26 17 29 29 O 1.39647 * 110.56353 * 322.14964 * 28 27 26 30 30 H 4.40885 * 5.52212 * 180.02562 * 4 1 2 31 31 H 1.08998 * 109.47566 * 344.69670 * 3 2 1 32 32 H 1.09008 * 109.46482 * 224.70330 * 3 2 1 33 33 H 1.09006 * 110.41001 * 82.18302 * 5 4 3 34 34 H 1.08995 * 110.51574 * 319.79302 * 5 4 3 35 35 H 1.08994 * 110.32643 * 264.96313 * 6 5 4 36 36 H 1.08996 * 110.32326 * 142.74438 * 6 5 4 37 37 H 1.09001 * 110.32744 * 241.10269 * 7 6 5 38 38 H 1.08995 * 110.41479 * 118.94009 * 7 6 5 39 39 H 0.97007 * 119.99176 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47021 * 300.26972 * 13 12 10 41 41 H 1.09002 * 109.46912 * 60.27314 * 13 12 10 42 42 H 1.08999 * 109.99543 * 297.23924 * 16 14 13 43 43 H 1.09001 * 109.99237 * 58.60912 * 16 14 13 44 44 H 0.97003 * 120.00285 * 179.97438 * 21 20 18 45 45 H 1.08995 * 108.12733 * 211.11029 * 26 17 16 46 46 H 1.08995 * 108.12720 * 327.81569 * 26 17 16 47 47 H 1.08998 * 109.57573 * 79.27663 * 27 26 17 48 48 H 1.09005 * 109.57003 * 199.52447 * 27 26 17 49 49 H 1.08999 * 109.25500 * 82.42730 * 28 27 26 50 50 H 1.08996 * 109.25904 * 201.86528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1355 0.3524 -1.3396 5 6 2.9659 -0.7823 -2.2833 6 6 3.9664 -0.4933 -3.4230 7 6 5.0418 0.4147 -2.7916 8 6 4.6005 0.5980 -1.3235 9 1 5.1023 -0.1268 -0.6825 10 6 4.8933 2.0011 -0.8580 11 8 3.9862 2.7241 -0.5038 12 7 6.1630 2.4526 -0.8353 13 6 6.4469 3.8185 -0.3885 14 6 7.9528 4.0776 -0.4654 15 1 8.2680 3.9866 -1.5048 16 6 8.2161 5.4508 -0.0144 17 7 9.7043 5.6430 -0.0572 18 6 10.2726 6.4890 -0.9718 19 1 11.2387 6.9290 -0.7731 20 6 9.6070 6.7809 -2.1545 21 7 8.6455 5.9899 -2.5810 22 14 10.0759 8.2967 -3.1405 23 1 11.1786 9.0139 -2.4514 24 1 10.5235 7.8866 -4.4957 25 1 8.8987 9.1941 -3.2584 26 6 10.5196 4.9235 0.8781 27 6 11.0070 3.5196 0.4261 28 6 9.8475 2.7992 -0.3123 29 8 8.6249 3.0829 0.3000 30 1 -1.0501 0.0002 0.0001 31 1 3.0098 -0.9904 0.2712 32 1 3.0089 0.7313 0.7230 33 1 1.9468 -0.8067 -2.6693 34 1 3.2090 -1.7255 -1.7942 35 1 3.4676 0.0241 -4.2425 36 1 4.4150 -1.4213 -3.7773 37 1 5.0709 1.3779 -3.3012 38 1 6.0190 -0.0659 -2.8360 39 1 6.8884 1.8741 -1.1184 40 1 5.9231 4.5270 -1.0302 41 1 6.1091 3.9418 0.6405 42 1 7.7292 6.1621 -0.6815 43 1 7.8523 5.5847 1.0044 44 1 8.1801 6.1940 -3.4072 45 1 11.3964 5.5312 1.1014 46 1 9.9508 4.8012 1.7998 47 1 11.8573 3.6276 -0.2473 48 1 11.3039 2.9377 1.2987 49 1 9.8173 3.1357 -1.3486 50 1 10.0201 1.7233 -0.2892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073641810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:26 Heat of formation + Delta-G solvation = 19.059387 kcal Electronic energy + Delta-G solvation = -30154.869101 eV Core-core repulsion = 26185.074939 eV Total energy + Delta-G solvation = -3969.794162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.21526 -39.07572 -37.84305 -35.02807 -34.52470 -34.12598 -32.20532 -31.37029 -31.19520 -29.72580 -28.41326 -26.32009 -25.46665 -25.28272 -22.97568 -21.92782 -21.27536 -20.76854 -19.78445 -19.55457 -18.32760 -17.37953 -16.96215 -16.37929 -15.96371 -15.65009 -15.05227 -14.95527 -14.62833 -14.52649 -14.39163 -14.31965 -13.96068 -13.71560 -13.20913 -13.03007 -12.79799 -12.64739 -12.54730 -12.37540 -12.06547 -11.96896 -11.67110 -11.45039 -11.39068 -11.20978 -10.86859 -10.83249 -10.74606 -10.53299 -10.47466 -10.21969 -10.16444 -9.98508 -9.70622 -9.55885 -9.48314 -8.81936 -8.70610 -8.61056 -8.50707 -6.83379 -5.93463 -3.32084 2.57235 2.79225 2.92356 3.31964 3.34784 3.41533 3.42928 4.02500 4.27825 4.38035 4.42591 4.55060 4.69361 4.75866 4.94631 5.05465 5.14138 5.23358 5.27299 5.29141 5.36912 5.41787 5.59485 5.68207 5.71540 5.79990 5.84117 5.89140 5.90760 5.95819 6.00657 6.13543 6.31891 6.41647 6.47374 6.53923 6.58087 6.65262 6.69897 6.70620 6.80417 6.92811 6.95738 7.11222 7.32115 7.55852 7.71222 7.87665 8.11881 8.30915 8.56939 9.05828 9.73961 10.28197 11.15572 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.002811 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.580815 B = 9959.285301 C =10427.104690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.153 3.847 4 N -0.482 5.482 5 C 0.032 3.968 6 C -0.122 4.122 7 C -0.115 4.115 8 C 0.044 3.956 9 H 0.079 0.921 10 C 0.517 3.483 11 O -0.528 6.528 12 N -0.714 5.714 13 C 0.123 3.877 14 C 0.061 3.939 15 H 0.107 0.893 16 C 0.143 3.857 17 N -0.588 5.588 18 C -0.248 4.248 19 H 0.069 0.931 20 C 0.002 3.998 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.288 1.288 26 C 0.161 3.839 27 C -0.172 4.172 28 C 0.068 3.932 29 O -0.370 6.370 30 H 0.216 0.784 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.399 0.601 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.019 0.981 44 H 0.255 0.745 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 -15.636 1.125 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.168 4.168 3 C 0.026 3.974 4 N -0.206 5.206 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.068 4.068 9 H 0.097 0.903 10 C 0.301 3.699 11 O -0.403 6.403 12 N -0.365 5.365 13 C -0.001 4.001 14 C 0.003 3.997 15 H 0.124 0.876 16 C 0.018 3.982 17 N -0.308 5.308 18 C -0.378 4.378 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.552 5.552 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.215 1.215 26 C 0.032 3.968 27 C -0.214 4.214 28 C -0.010 4.010 29 O -0.288 6.288 30 H 0.233 0.767 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.233 0.767 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.632 -14.631 1.275 17.035 hybrid contribution 1.000 -0.204 -0.639 1.204 sum -7.633 -14.835 0.636 16.695 Atomic orbital electron populations 1.24810 0.95794 1.01794 0.99905 1.22688 0.93960 0.99630 1.00560 1.19175 0.85832 1.00401 0.92000 1.65026 1.12010 1.36366 1.07219 1.23199 1.00762 0.91884 0.93676 1.22284 0.96001 0.99660 0.98045 1.22285 0.98926 1.01567 0.92607 1.22627 0.89956 0.95507 0.98705 0.90314 1.20133 0.82923 0.88443 0.78423 1.90702 1.44704 1.57682 1.47232 1.45881 1.07615 1.16069 1.66943 1.21682 0.96630 0.82146 0.99642 1.22195 0.88790 0.90714 0.98047 0.87551 1.20752 0.84938 0.94945 0.97560 1.44121 1.00550 1.47855 1.38283 1.19298 1.04044 1.18364 0.96051 0.91279 1.24898 0.99487 0.99037 0.96149 1.69867 1.26966 1.35963 1.22416 0.86209 0.77834 0.83090 0.79536 1.20399 1.21859 1.21504 1.20368 0.94150 0.90061 0.92232 1.23587 0.98232 0.99980 0.99561 1.22340 0.84865 0.96700 0.97127 1.87506 1.31280 1.57706 1.52352 0.76676 0.92343 0.87868 0.89759 0.93517 0.90578 0.90865 0.89987 0.90125 0.76734 0.90424 0.92161 0.87803 0.96283 0.93506 0.94898 0.95043 0.92533 0.93219 0.91892 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 19.25 29.55 0.57 -1.67 16 2 C -0.17 -2.11 13.25 -37.12 -0.49 -2.60 16 3 C 0.15 1.83 5.12 -6.61 -0.03 1.79 16 4 N -0.48 -6.04 4.59 -226.98 -1.04 -7.08 16 5 C 0.03 0.31 6.10 -2.19 -0.01 0.30 16 6 C -0.12 -1.05 7.00 -25.35 -0.18 -1.22 16 7 C -0.12 -1.15 6.47 -25.35 -0.16 -1.32 16 8 C 0.04 0.52 2.67 -67.22 -0.18 0.34 16 9 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 10 C 0.52 8.12 6.84 -10.99 -0.08 8.05 16 11 O -0.53 -10.43 15.76 5.55 0.09 -10.34 16 12 N -0.71 -11.03 5.34 -60.30 -0.32 -11.36 16 13 C 0.12 2.24 5.26 -4.05 -0.02 2.22 16 14 C 0.06 1.21 2.01 -29.65 -0.06 1.15 16 15 H 0.11 2.37 5.23 -51.93 -0.27 2.10 16 16 C 0.14 3.20 4.71 -4.93 -0.02 3.17 16 17 N -0.59 -13.90 2.61 -174.50 -0.46 -14.36 16 18 C -0.25 -6.39 9.62 -15.06 -0.14 -6.54 16 19 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.91 -23.38 9.56 55.49 0.53 -22.85 16 22 Si 0.90 20.75 29.60 -169.99 -5.03 15.71 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 C 0.16 3.35 5.33 -4.43 -0.02 3.32 16 27 C -0.17 -3.14 6.75 -24.33 -0.16 -3.30 16 28 C 0.07 1.22 6.38 38.32 0.24 1.46 16 29 O -0.37 -6.98 9.34 -31.95 -0.30 -7.28 16 30 H 0.22 1.54 7.80 -54.09 -0.42 1.12 16 31 H 0.06 0.56 7.77 -51.93 -0.40 0.15 16 32 H 0.10 1.38 7.30 -51.92 -0.38 1.00 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.38 7.75 -51.93 -0.40 -0.02 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 5.46 8.17 -40.82 -0.33 5.13 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.10 2.56 6.03 -51.93 -0.31 2.25 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 45 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 46 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 1.28 6.66 -51.93 -0.35 0.93 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -29.78 395.90 -9.71 -39.48 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.30 Total: 6.98 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.84 Total: 5.13 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -1.29 Total: -55.65 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.21 Total: -17.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.78 -9.71 -39.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073641810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.543 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds