Wall clock time and date at job start Tue Mar 31 2020 18:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47109 * 104.70397 * 3 2 1 5 5 C 1.48554 * 111.00037 * 285.41279 * 4 3 2 6 6 C 1.54379 * 104.59720 * 200.95804 * 5 4 3 7 7 C 1.54260 * 105.05765 * 23.85589 * 6 5 4 8 8 C 1.48560 * 110.99756 * 169.99294 * 4 3 2 9 9 H 1.08996 * 110.51569 * 40.21577 * 8 4 3 10 10 C 1.50697 * 110.41648 * 277.81931 * 8 4 3 11 11 O 1.21284 * 119.99748 * 3.37287 * 10 8 4 12 12 N 1.34776 * 120.00603 * 183.37925 * 10 8 4 13 13 C 1.46499 * 120.00408 * 179.72442 * 12 10 8 14 14 C 1.52994 * 109.46983 * 180.27003 * 13 12 10 15 15 H 1.08999 * 108.57132 * 62.05594 * 14 13 12 16 16 C 1.46919 * 108.61785 * 179.97438 * 14 13 12 17 17 N 1.50121 * 106.77470 * 177.92319 * 16 14 13 18 18 C 1.36933 * 120.63400 * 111.33385 * 17 16 14 19 19 H 1.08000 * 120.00045 * 155.65989 * 18 17 16 20 20 C 1.38812 * 120.00168 * 335.65245 * 18 17 16 21 21 N 1.31613 * 119.99829 * 340.74287 * 20 18 17 22 22 Si 1.86805 * 120.00014 * 160.73275 * 20 18 17 23 23 H 1.48502 * 109.47139 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46823 * 120.00702 * 22 20 18 25 25 H 1.48496 * 109.47062 * 240.00481 * 22 20 18 26 26 C 1.43427 * 118.72780 * 291.34467 * 17 16 14 27 27 C 1.55328 * 116.23431 * 89.35956 * 26 17 16 28 28 C 1.55195 * 108.87640 * 319.46054 * 27 26 17 29 29 O 1.39647 * 110.56353 * 322.14964 * 28 27 26 30 30 H 4.40885 * 5.52212 * 180.02562 * 4 1 2 31 31 H 1.08998 * 109.47566 * 344.69670 * 3 2 1 32 32 H 1.09008 * 109.46482 * 224.70330 * 3 2 1 33 33 H 1.09006 * 110.41001 * 82.18302 * 5 4 3 34 34 H 1.08995 * 110.51574 * 319.79302 * 5 4 3 35 35 H 1.08994 * 110.32643 * 264.96313 * 6 5 4 36 36 H 1.08996 * 110.32326 * 142.74438 * 6 5 4 37 37 H 1.09001 * 110.32744 * 241.10269 * 7 6 5 38 38 H 1.08995 * 110.41479 * 118.94009 * 7 6 5 39 39 H 0.97007 * 119.99176 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47021 * 300.26972 * 13 12 10 41 41 H 1.09002 * 109.46912 * 60.27314 * 13 12 10 42 42 H 1.08999 * 109.99543 * 297.23924 * 16 14 13 43 43 H 1.09001 * 109.99237 * 58.60912 * 16 14 13 44 44 H 0.97003 * 120.00285 * 179.97438 * 21 20 18 45 45 H 1.08995 * 108.12733 * 211.11029 * 26 17 16 46 46 H 1.08995 * 108.12720 * 327.81569 * 26 17 16 47 47 H 1.08998 * 109.57573 * 79.27663 * 27 26 17 48 48 H 1.09005 * 109.57003 * 199.52447 * 27 26 17 49 49 H 1.08999 * 109.25500 * 82.42730 * 28 27 26 50 50 H 1.08996 * 109.25904 * 201.86528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1355 0.3524 -1.3396 5 6 2.9659 -0.7823 -2.2833 6 6 3.9664 -0.4933 -3.4230 7 6 5.0418 0.4147 -2.7916 8 6 4.6005 0.5980 -1.3235 9 1 5.1023 -0.1268 -0.6825 10 6 4.8933 2.0011 -0.8580 11 8 3.9862 2.7241 -0.5038 12 7 6.1630 2.4526 -0.8353 13 6 6.4469 3.8185 -0.3885 14 6 7.9528 4.0776 -0.4654 15 1 8.2680 3.9866 -1.5048 16 6 8.2161 5.4508 -0.0144 17 7 9.7043 5.6430 -0.0572 18 6 10.2726 6.4890 -0.9718 19 1 11.2387 6.9290 -0.7731 20 6 9.6070 6.7809 -2.1545 21 7 8.6455 5.9899 -2.5810 22 14 10.0759 8.2967 -3.1405 23 1 11.1786 9.0139 -2.4514 24 1 10.5235 7.8866 -4.4957 25 1 8.8987 9.1941 -3.2584 26 6 10.5196 4.9235 0.8781 27 6 11.0070 3.5196 0.4261 28 6 9.8475 2.7992 -0.3123 29 8 8.6249 3.0829 0.3000 30 1 -1.0501 0.0002 0.0001 31 1 3.0098 -0.9904 0.2712 32 1 3.0089 0.7313 0.7230 33 1 1.9468 -0.8067 -2.6693 34 1 3.2090 -1.7255 -1.7942 35 1 3.4676 0.0241 -4.2425 36 1 4.4150 -1.4213 -3.7773 37 1 5.0709 1.3779 -3.3012 38 1 6.0190 -0.0659 -2.8360 39 1 6.8884 1.8741 -1.1184 40 1 5.9231 4.5270 -1.0302 41 1 6.1091 3.9418 0.6405 42 1 7.7292 6.1621 -0.6815 43 1 7.8523 5.5847 1.0044 44 1 8.1801 6.1940 -3.4072 45 1 11.3964 5.5312 1.1014 46 1 9.9508 4.8012 1.7998 47 1 11.8573 3.6276 -0.2473 48 1 11.3039 2.9377 1.2987 49 1 9.8173 3.1357 -1.3486 50 1 10.0201 1.7233 -0.2892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073641810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:25 Heat of formation + Delta-G solvation = -0.500786 kcal Electronic energy + Delta-G solvation = -30155.717294 eV Core-core repulsion = 26185.074939 eV Total energy + Delta-G solvation = -3970.642355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36404 -40.55305 -38.98721 -36.78740 -35.92024 -35.02539 -33.83225 -32.98853 -32.14072 -30.87099 -29.88393 -27.20107 -27.05621 -26.94226 -24.48598 -23.14522 -22.38358 -21.99396 -21.31481 -20.89853 -19.14985 -18.95096 -18.33709 -17.70496 -17.23003 -16.92058 -16.58292 -16.35664 -16.07285 -15.77274 -15.57844 -15.45689 -15.23315 -15.06724 -14.78816 -14.31338 -14.18110 -13.94536 -13.69120 -13.57075 -13.38563 -13.28979 -13.06612 -12.90325 -12.64728 -12.50847 -12.48332 -12.26240 -12.16361 -11.92235 -11.76027 -11.56380 -11.40129 -11.36604 -11.17330 -11.09184 -10.79398 -10.55592 -10.25807 -10.02366 -9.52997 -8.71163 -7.89164 -5.29650 1.46442 1.51904 1.59046 1.65326 1.73183 1.91475 2.18088 2.52349 3.11507 3.15869 3.28323 3.43946 3.52570 3.56783 3.71593 3.97203 4.07590 4.18675 4.24970 4.29832 4.32890 4.39062 4.42669 4.48067 4.53382 4.58457 4.69608 4.74425 4.80892 4.81489 4.88838 4.98917 5.01364 5.07406 5.09404 5.14791 5.19667 5.20759 5.23413 5.35824 5.41459 5.46394 5.53613 5.69079 5.73096 5.90667 6.36869 6.53372 6.65095 6.70674 7.11263 7.32704 7.83661 8.36588 9.16700 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.002811 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.580815 B = 9959.285301 C =10427.104690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.212 4.212 3 C 0.154 3.846 4 N -0.512 5.512 5 C 0.035 3.965 6 C -0.116 4.116 7 C -0.114 4.114 8 C 0.051 3.949 9 H 0.107 0.893 10 C 0.514 3.486 11 O -0.574 6.574 12 N -0.705 5.705 13 C 0.136 3.864 14 C 0.083 3.917 15 H 0.085 0.915 16 C 0.144 3.856 17 N -0.602 5.602 18 C -0.261 4.261 19 H 0.063 0.937 20 C -0.036 4.036 21 N -0.916 5.916 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.154 3.846 27 C -0.165 4.165 28 C 0.068 3.932 29 O -0.366 6.366 30 H 0.248 0.752 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.410 0.590 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.022 0.978 44 H 0.250 0.750 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.036 0.964 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 -18.216 1.040 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.212 4.212 3 C 0.028 3.972 4 N -0.236 5.236 5 C -0.092 4.092 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.061 4.061 9 H 0.125 0.875 10 C 0.301 3.699 11 O -0.453 6.453 12 N -0.357 5.357 13 C 0.011 3.989 14 C 0.024 3.976 15 H 0.103 0.897 16 C 0.019 3.981 17 N -0.323 5.323 18 C -0.391 4.391 19 H 0.081 0.919 20 C -0.233 4.233 21 N -0.562 5.562 22 Si 0.787 3.213 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.026 3.974 27 C -0.206 4.206 28 C -0.010 4.010 29 O -0.284 6.284 30 H 0.264 0.736 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.246 0.754 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.055 0.945 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.216 -17.248 1.194 19.142 hybrid contribution 0.854 0.631 -0.552 1.197 sum -7.362 -16.617 0.642 18.186 Atomic orbital electron populations 1.25670 0.96722 1.00272 0.98338 1.23173 0.94873 1.01121 1.02071 1.19131 0.85833 1.00877 0.91398 1.64942 1.12334 1.38371 1.08002 1.23235 1.00850 0.91755 0.93392 1.22292 0.95276 1.00477 0.97331 1.22328 1.00837 1.01051 0.90979 1.22623 0.90342 0.92852 1.00242 0.87502 1.20936 0.82015 0.89879 0.77108 1.90677 1.45956 1.59390 1.49248 1.45748 1.08303 1.14977 1.66650 1.21305 0.95285 0.83482 0.98859 1.21710 0.89550 0.89754 0.96623 0.89689 1.20667 0.84487 0.95897 0.97017 1.44230 1.01125 1.48579 1.38371 1.19418 1.04020 1.19167 0.96531 0.91938 1.25459 0.99872 1.00885 0.97041 1.69991 1.27346 1.36524 1.22310 0.85370 0.77231 0.80504 0.78203 1.19999 1.21995 1.22119 1.20493 0.93761 0.91456 0.91723 1.23500 0.98078 0.98396 1.00649 1.22409 0.84250 0.98855 0.95449 1.87506 1.31700 1.56988 1.52216 0.73608 0.89895 0.90270 0.90296 0.91469 0.91307 0.88015 0.92379 0.87388 0.75377 0.92570 0.92758 0.90524 0.95960 0.94024 0.95156 0.94787 0.92781 0.90308 0.94511 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.95 19.25 74.32 1.43 -2.52 16 2 C -0.21 -5.21 13.25 31.13 0.41 -4.80 16 3 C 0.15 3.60 5.12 84.50 0.43 4.04 16 4 N -0.51 -12.36 4.59 -872.04 -4.00 -16.37 16 5 C 0.03 0.59 6.10 86.45 0.53 1.12 16 6 C -0.12 -1.70 7.00 31.49 0.22 -1.48 16 7 C -0.11 -2.04 6.47 31.49 0.20 -1.83 16 8 C 0.05 1.13 2.67 44.32 0.12 1.25 16 9 H 0.11 1.79 8.00 -2.39 -0.02 1.77 16 10 C 0.51 16.23 6.84 87.66 0.60 16.83 16 11 O -0.57 -23.50 15.76 -3.04 -0.05 -23.54 16 12 N -0.71 -21.70 5.34 -463.08 -2.47 -24.17 16 13 C 0.14 5.09 5.26 86.38 0.45 5.55 16 14 C 0.08 3.31 2.01 28.71 0.06 3.37 16 15 H 0.09 3.86 5.23 -2.39 -0.01 3.85 16 16 C 0.14 6.60 4.71 83.78 0.39 7.00 16 17 N -0.60 -28.73 2.61 -706.00 -1.84 -30.57 16 18 C -0.26 -13.63 9.62 84.03 0.81 -12.82 16 19 H 0.06 3.28 7.88 -2.91 -0.02 3.25 16 20 C -0.04 -1.88 4.92 84.86 0.42 -1.46 16 21 N -0.92 -48.29 9.56 21.65 0.21 -48.08 16 22 Si 0.96 43.17 29.60 68.60 2.03 45.20 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 C 0.15 6.27 5.33 87.75 0.47 6.74 16 27 C -0.17 -5.67 6.75 32.15 0.22 -5.45 16 28 C 0.07 2.31 6.38 72.73 0.46 2.77 16 29 O -0.37 -13.29 9.34 -137.26 -1.28 -14.57 16 30 H 0.25 2.95 7.80 -4.41 -0.03 2.91 16 31 H 0.08 1.43 7.77 -2.39 -0.02 1.41 16 32 H 0.08 2.18 7.30 -2.38 -0.02 2.16 16 33 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 0.87 7.75 -2.39 -0.02 0.86 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.33 7.85 -2.39 -0.02 1.31 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.41 10.71 8.17 -92.70 -0.76 9.95 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 43 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 45 H 0.03 1.23 7.96 -2.39 -0.02 1.21 16 46 H 0.03 1.35 7.98 -2.39 -0.02 1.33 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 49 H 0.04 1.46 6.66 -2.39 -0.02 1.45 16 50 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -66.24 395.90 -0.02 -66.25 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.17 Total: 27.57 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 7.23 Total: 18.28 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -8.11 Total: -119.19 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.33 Total: -38.11 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -66.24 -0.02 -66.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073641810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.753 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds