Wall clock time and date at job start Tue Mar 31 2020 19:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 N 1.46498 * 109.46818 * 179.97438 * 3 2 1 5 5 C 1.46766 * 124.35196 * 270.04581 * 4 3 2 6 6 C 1.54478 * 105.47289 * 162.96575 * 5 4 3 7 7 H 1.08998 * 111.00253 * 267.27875 * 6 5 4 8 8 C 1.50709 * 110.96768 * 143.53683 * 6 5 4 9 9 O 1.21275 * 119.99668 * 6.16247 * 8 6 5 10 10 N 1.34775 * 119.99742 * 186.16563 * 8 6 5 11 11 C 1.47400 * 125.58982 * 359.97388 * 10 8 6 12 12 C 1.54868 * 104.81633 * 204.43978 * 11 10 8 13 13 C 1.55166 * 101.73316 * 322.76657 * 12 11 10 14 14 H 1.08993 * 113.25988 * 158.95418 * 13 12 11 15 15 C 1.53758 * 108.31179 * 285.39317 * 13 12 11 16 16 N 1.46586 * 108.10955 * 124.37433 * 15 13 12 17 17 C 1.36937 * 125.30908 * 181.28417 * 16 15 13 18 18 H 1.08010 * 119.99889 * 16.38111 * 17 16 15 19 19 C 1.38810 * 120.00194 * 196.37338 * 17 16 15 20 20 N 1.31622 * 119.99747 * 29.00950 * 19 17 16 21 21 Si 1.86799 * 120.00360 * 209.00404 * 19 17 16 22 22 H 1.48502 * 109.46908 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47323 * 240.00356 * 21 19 17 24 24 H 1.48497 * 109.47251 * 120.00111 * 21 19 17 25 25 C 1.46713 * 109.37879 * 1.54479 * 16 15 13 26 26 C 1.46707 * 125.58473 * 180.02562 * 10 8 6 27 27 H 1.08994 * 111.53813 * 56.06166 * 26 10 8 28 28 C 1.54621 * 101.76678 * 25.41566 * 6 5 4 29 29 C 1.34419 * 124.35046 * 90.02501 * 4 3 2 30 30 O 1.21279 * 124.94263 * 0.39173 * 29 4 3 31 31 H 1.09002 * 109.47231 * 59.99681 * 1 2 3 32 32 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47346 * 300.00336 * 1 2 3 34 34 H 1.08996 * 109.47194 * 239.99496 * 2 1 3 35 35 H 1.09006 * 109.46834 * 120.00035 * 2 1 3 36 36 H 1.08996 * 109.47275 * 60.00184 * 3 2 1 37 37 H 1.08997 * 109.47226 * 299.99533 * 3 2 1 38 38 H 1.09001 * 110.24400 * 43.96338 * 5 4 3 39 39 H 1.09002 * 110.24247 * 281.96880 * 5 4 3 40 40 H 1.08994 * 110.37293 * 85.60281 * 11 10 8 41 41 H 1.09001 * 110.46398 * 323.31667 * 11 10 8 42 42 H 1.09005 * 110.97468 * 204.65895 * 12 11 10 43 43 H 1.08997 * 110.97240 * 80.88186 * 12 11 10 44 44 H 1.08999 * 109.74424 * 4.70037 * 15 13 12 45 45 H 1.09006 * 109.74023 * 244.04668 * 15 13 12 46 46 H 0.97003 * 119.99667 * 6.10073 * 20 19 17 47 47 H 1.08998 * 109.98237 * 101.14301 * 25 16 15 48 48 H 1.08997 * 109.98585 * 222.44603 * 25 16 15 49 49 H 1.09001 * 110.48604 * 93.88303 * 28 6 5 50 50 H 1.09007 * 110.48614 * 216.52173 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3326 1.4416 1.2126 6 6 5.7405 1.0057 0.7500 7 1 5.8667 -0.0728 0.8456 8 6 6.8111 1.7410 1.5144 9 8 6.5073 2.4661 2.4378 10 7 8.1062 1.5927 1.1718 11 6 8.6122 0.7465 0.0761 12 6 10.0727 0.4171 0.4722 13 6 10.5324 1.7503 1.1194 14 1 11.3893 1.6337 1.7828 15 6 10.7695 2.7752 -0.0020 16 7 9.9493 3.9570 0.2799 17 6 9.8733 5.0740 -0.5085 18 1 10.2225 5.0389 -1.5300 19 6 9.3471 6.2515 0.0049 20 7 9.4478 6.5113 1.2913 21 14 8.4964 7.4673 -1.1297 22 1 8.5150 6.9440 -2.5193 23 1 9.2071 8.7703 -1.0814 24 1 7.0902 7.6539 -0.6903 25 6 9.2274 3.7588 1.5417 26 6 9.2433 2.2463 1.8291 27 1 9.2648 2.0326 2.8976 28 6 5.7301 1.4319 -0.7363 29 6 4.2639 1.4427 -1.1088 30 8 3.8356 1.4498 -2.2434 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.9374 0.7312 1.9388 39 1 4.3702 2.4418 1.6443 40 1 8.5887 1.2926 -0.8669 41 1 8.0246 -0.1683 -0.0013 42 1 10.6723 0.1834 -0.4076 43 1 10.1066 -0.3991 1.1938 44 1 10.4793 2.3457 -0.9608 45 1 11.8226 3.0555 -0.0280 46 1 9.9653 5.9252 1.8654 47 1 9.7273 4.2990 2.3456 48 1 8.1994 4.1070 1.4414 49 1 6.1601 2.4269 -0.8508 50 1 6.2730 0.7083 -1.3445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076302995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:56 Heat of formation + Delta-G solvation = -39.059600 kcal Electronic energy + Delta-G solvation = -30828.945801 eV Core-core repulsion = 26856.631410 eV Total energy + Delta-G solvation = -3972.314391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.03588 -39.98951 -38.10453 -36.39290 -35.14456 -34.86572 -32.55164 -31.50003 -30.98445 -28.89186 -27.81309 -26.76619 -26.31748 -24.54175 -23.75527 -22.16859 -21.91934 -20.73930 -19.82644 -19.41174 -18.64797 -17.68498 -17.35563 -16.87766 -16.26338 -15.99738 -15.38532 -14.88049 -14.76698 -14.46063 -14.22866 -13.86133 -13.80383 -13.78137 -13.50441 -13.44315 -13.23034 -12.84768 -12.74340 -12.40464 -12.36737 -12.16580 -12.06984 -11.77812 -11.63734 -11.59497 -11.40164 -11.23233 -10.98754 -10.76951 -10.66051 -10.52135 -10.44241 -10.33640 -10.02849 -9.99180 -9.58672 -9.52721 -8.82751 -8.40933 -8.33328 -6.90639 -6.06439 -3.12640 2.51731 2.72886 2.77186 3.14727 3.53638 3.58072 3.69968 4.09254 4.22162 4.45668 4.58100 4.65259 4.67256 4.69188 4.75945 4.81915 4.95501 4.98435 5.06363 5.18275 5.25393 5.32174 5.36155 5.39952 5.40547 5.44947 5.52527 5.59374 5.65333 5.68865 5.70110 5.72231 5.80388 5.84265 5.88126 5.95693 6.06054 6.08856 6.21060 6.35128 6.40552 6.55619 6.71746 6.97443 6.99041 7.11078 7.70797 7.84758 8.08275 8.31507 8.51785 9.05235 9.83793 10.36809 11.24225 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.003902 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.906336 B = 7174.305724 C = 8475.451194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.620 5.620 5 C 0.119 3.881 6 C -0.117 4.117 7 H 0.114 0.886 8 C 0.539 3.461 9 O -0.530 6.530 10 N -0.595 5.595 11 C 0.100 3.900 12 C -0.124 4.124 13 C -0.109 4.109 14 H 0.098 0.902 15 C 0.141 3.859 16 N -0.596 5.596 17 C -0.340 4.340 18 H 0.065 0.935 19 C -0.022 4.022 20 N -0.912 5.912 21 Si 1.063 2.937 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.290 1.290 25 C 0.142 3.858 26 C 0.125 3.875 27 H 0.084 0.916 28 C -0.146 4.146 29 C 0.523 3.477 30 O -0.531 6.531 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.022 0.978 46 H 0.270 0.730 47 H 0.034 0.966 48 H 0.054 0.946 49 H 0.116 0.884 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.943 -18.275 0.589 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.004 3.996 4 N -0.354 5.354 5 C -0.004 4.004 6 C -0.139 4.139 7 H 0.132 0.868 8 C 0.326 3.674 9 O -0.407 6.407 10 N -0.328 5.328 11 C -0.023 4.023 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.117 0.883 15 C 0.015 3.985 16 N -0.323 5.323 17 C -0.468 4.468 18 H 0.082 0.918 19 C -0.224 4.224 20 N -0.553 5.553 21 Si 0.893 3.107 22 H -0.218 1.218 23 H -0.221 1.221 24 H -0.217 1.217 25 C 0.016 3.984 26 C 0.021 3.979 27 H 0.102 0.898 28 C -0.186 4.186 29 C 0.310 3.690 30 O -0.407 6.407 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.134 0.866 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.349 -16.347 0.380 19.351 hybrid contribution 1.062 -1.434 0.066 1.785 sum -9.287 -17.781 0.446 20.066 Atomic orbital electron populations 1.21693 0.94981 1.01976 1.02076 1.21912 0.96265 0.97154 1.02591 1.21446 0.77746 0.97028 1.03429 1.48330 1.06260 1.73572 1.07275 1.21973 0.87711 1.03952 0.86795 1.22152 0.94417 1.01837 0.95492 0.86820 1.19560 0.81782 0.81975 0.84049 1.90741 1.81074 1.38628 1.30224 1.48205 1.05130 1.46124 1.33383 1.22405 0.94787 0.93880 0.91263 1.22811 0.95157 0.97154 1.01111 1.23073 0.96730 0.95001 0.98071 0.88338 1.21212 0.94761 0.87956 0.94560 1.44239 1.48273 1.15380 1.24440 1.19693 1.44604 0.88980 0.93495 0.91751 1.25676 1.01152 0.96674 0.98943 1.70735 1.41172 1.37585 1.05766 0.83572 0.77053 0.75524 0.74533 1.21794 1.22126 1.21672 1.21466 0.97492 0.89912 0.89579 1.22437 0.84241 0.95184 0.96033 0.89819 1.22412 0.95320 1.06107 0.94797 1.20780 0.88935 0.74864 0.84380 1.90718 1.78569 1.50422 1.21019 0.92426 0.92438 0.92496 0.91578 0.91740 0.90172 0.89901 0.89856 0.88846 0.90548 0.91051 0.89758 0.90947 0.95485 0.95996 0.91847 0.94883 0.92775 0.86608 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.13 1.26 5.93 -4.04 -0.02 1.23 16 4 N -0.62 -7.49 2.93 -172.42 -0.51 -8.00 16 5 C 0.12 1.35 6.66 -3.12 -0.02 1.33 16 6 C -0.12 -1.36 2.79 -90.14 -0.25 -1.61 16 7 H 0.11 0.98 7.98 -51.93 -0.41 0.56 16 8 C 0.54 8.51 6.77 -10.98 -0.07 8.44 16 9 O -0.53 -10.42 15.30 5.56 0.09 -10.34 16 10 N -0.60 -9.18 3.02 -162.15 -0.49 -9.67 16 11 C 0.10 1.19 4.99 -2.56 -0.01 1.18 16 12 C -0.12 -1.37 6.30 -24.60 -0.16 -1.52 16 13 C -0.11 -1.64 4.25 -87.87 -0.37 -2.01 16 14 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.14 2.73 6.41 -3.60 -0.02 2.71 16 16 N -0.60 -14.74 3.28 -171.93 -0.56 -15.31 16 17 C -0.34 -9.59 9.98 -15.06 -0.15 -9.74 16 18 H 0.06 1.82 7.98 -52.48 -0.42 1.40 16 19 C -0.02 -0.64 5.12 -17.43 -0.09 -0.73 16 20 N -0.91 -28.09 12.97 55.49 0.72 -27.37 16 21 Si 1.06 26.26 30.01 -169.99 -5.10 21.16 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.14 3.34 5.00 -3.42 -0.02 3.32 16 26 C 0.12 2.20 3.65 -66.11 -0.24 1.95 16 27 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 28 C -0.15 -1.86 5.36 -26.75 -0.14 -2.00 16 29 C 0.52 7.55 8.02 -10.86 -0.09 7.46 16 30 O -0.53 -9.46 17.59 5.56 0.10 -9.36 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.28 7.06 -51.93 -0.37 0.91 16 40 H 0.08 1.03 7.46 -51.93 -0.39 0.65 16 41 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16 42 H 0.08 0.82 7.96 -51.93 -0.41 0.40 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.51 6.78 -51.93 -0.35 0.16 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.27 8.30 5.93 -40.82 -0.24 8.06 16 47 H 0.03 0.86 6.40 -51.93 -0.33 0.53 16 48 H 0.05 1.48 7.22 -51.93 -0.38 1.11 16 49 H 0.12 1.79 7.89 -51.93 -0.41 1.38 16 50 H 0.11 1.16 7.70 -51.93 -0.40 0.76 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -35.76 389.18 -9.71 -45.47 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.36 Total: -0.46 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.46 Total: 8.00 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.84 Total: -60.35 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.18 Total: -19.69 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.10 Total: 21.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.76 -9.71 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076302995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.410 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds