Wall clock time and date at job start Tue Mar 31 2020 19:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 N 1.46498 * 109.46818 * 179.97438 * 3 2 1 5 5 C 1.46766 * 124.35196 * 270.04581 * 4 3 2 6 6 C 1.54478 * 105.47289 * 162.96575 * 5 4 3 7 7 H 1.08998 * 111.00253 * 267.27875 * 6 5 4 8 8 C 1.50709 * 110.96768 * 143.53683 * 6 5 4 9 9 O 1.21275 * 119.99668 * 6.16247 * 8 6 5 10 10 N 1.34775 * 119.99742 * 186.16563 * 8 6 5 11 11 C 1.47400 * 125.58982 * 359.97388 * 10 8 6 12 12 C 1.54868 * 104.81633 * 204.43978 * 11 10 8 13 13 C 1.55166 * 101.73316 * 322.76657 * 12 11 10 14 14 H 1.08993 * 113.25988 * 158.95418 * 13 12 11 15 15 C 1.53758 * 108.31179 * 285.39317 * 13 12 11 16 16 N 1.46586 * 108.10955 * 124.37433 * 15 13 12 17 17 C 1.36937 * 125.30908 * 181.28417 * 16 15 13 18 18 H 1.08010 * 119.99889 * 16.38111 * 17 16 15 19 19 C 1.38810 * 120.00194 * 196.37338 * 17 16 15 20 20 N 1.31622 * 119.99747 * 29.00950 * 19 17 16 21 21 Si 1.86799 * 120.00360 * 209.00404 * 19 17 16 22 22 H 1.48502 * 109.46908 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47323 * 240.00356 * 21 19 17 24 24 H 1.48497 * 109.47251 * 120.00111 * 21 19 17 25 25 C 1.46713 * 109.37879 * 1.54479 * 16 15 13 26 26 C 1.46707 * 125.58473 * 180.02562 * 10 8 6 27 27 H 1.08994 * 111.53813 * 56.06166 * 26 10 8 28 28 C 1.54621 * 101.76678 * 25.41566 * 6 5 4 29 29 C 1.34419 * 124.35046 * 90.02501 * 4 3 2 30 30 O 1.21279 * 124.94263 * 0.39173 * 29 4 3 31 31 H 1.09002 * 109.47231 * 59.99681 * 1 2 3 32 32 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47346 * 300.00336 * 1 2 3 34 34 H 1.08996 * 109.47194 * 239.99496 * 2 1 3 35 35 H 1.09006 * 109.46834 * 120.00035 * 2 1 3 36 36 H 1.08996 * 109.47275 * 60.00184 * 3 2 1 37 37 H 1.08997 * 109.47226 * 299.99533 * 3 2 1 38 38 H 1.09001 * 110.24400 * 43.96338 * 5 4 3 39 39 H 1.09002 * 110.24247 * 281.96880 * 5 4 3 40 40 H 1.08994 * 110.37293 * 85.60281 * 11 10 8 41 41 H 1.09001 * 110.46398 * 323.31667 * 11 10 8 42 42 H 1.09005 * 110.97468 * 204.65895 * 12 11 10 43 43 H 1.08997 * 110.97240 * 80.88186 * 12 11 10 44 44 H 1.08999 * 109.74424 * 4.70037 * 15 13 12 45 45 H 1.09006 * 109.74023 * 244.04668 * 15 13 12 46 46 H 0.97003 * 119.99667 * 6.10073 * 20 19 17 47 47 H 1.08998 * 109.98237 * 101.14301 * 25 16 15 48 48 H 1.08997 * 109.98585 * 222.44603 * 25 16 15 49 49 H 1.09001 * 110.48604 * 93.88303 * 28 6 5 50 50 H 1.09007 * 110.48614 * 216.52173 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3326 1.4416 1.2126 6 6 5.7405 1.0057 0.7500 7 1 5.8667 -0.0728 0.8456 8 6 6.8111 1.7410 1.5144 9 8 6.5073 2.4661 2.4378 10 7 8.1062 1.5927 1.1718 11 6 8.6122 0.7465 0.0761 12 6 10.0727 0.4171 0.4722 13 6 10.5324 1.7503 1.1194 14 1 11.3893 1.6337 1.7828 15 6 10.7695 2.7752 -0.0020 16 7 9.9493 3.9570 0.2799 17 6 9.8733 5.0740 -0.5085 18 1 10.2225 5.0389 -1.5300 19 6 9.3471 6.2515 0.0049 20 7 9.4478 6.5113 1.2913 21 14 8.4964 7.4673 -1.1297 22 1 8.5150 6.9440 -2.5193 23 1 9.2071 8.7703 -1.0814 24 1 7.0902 7.6539 -0.6903 25 6 9.2274 3.7588 1.5417 26 6 9.2433 2.2463 1.8291 27 1 9.2648 2.0326 2.8976 28 6 5.7301 1.4319 -0.7363 29 6 4.2639 1.4427 -1.1088 30 8 3.8356 1.4498 -2.2434 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.9374 0.7312 1.9388 39 1 4.3702 2.4418 1.6443 40 1 8.5887 1.2926 -0.8669 41 1 8.0246 -0.1683 -0.0013 42 1 10.6723 0.1834 -0.4076 43 1 10.1066 -0.3991 1.1938 44 1 10.4793 2.3457 -0.9608 45 1 11.8226 3.0555 -0.0280 46 1 9.9653 5.9252 1.8654 47 1 9.7273 4.2990 2.3456 48 1 8.1994 4.1070 1.4414 49 1 6.1601 2.4269 -0.8508 50 1 6.2730 0.7083 -1.3445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076302995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:55 Heat of formation + Delta-G solvation = -63.154542 kcal Electronic energy + Delta-G solvation = -30829.990636 eV Core-core repulsion = 26856.631410 eV Total energy + Delta-G solvation = -3973.359226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.18646 -41.21564 -39.46051 -37.51873 -36.77360 -35.79625 -34.12469 -32.63368 -32.37177 -30.52017 -28.87397 -28.08389 -27.31373 -26.41358 -24.87038 -23.24870 -22.72848 -22.43280 -21.08121 -20.49876 -19.92204 -19.61310 -18.59753 -17.91700 -17.47094 -17.06204 -16.55042 -16.33340 -16.00677 -15.69401 -15.61123 -15.50322 -15.13144 -14.85994 -14.73775 -14.58229 -14.54801 -14.13183 -13.85587 -13.79396 -13.48466 -13.13079 -13.08510 -12.86689 -12.73645 -12.70218 -12.52089 -12.49889 -12.45258 -12.22400 -11.97175 -11.94827 -11.80427 -11.72720 -11.66832 -11.59695 -11.18532 -10.79198 -10.53276 -9.82624 -9.67700 -9.01476 -8.34252 -5.36569 1.38848 1.48522 1.50366 1.57219 1.72060 1.75381 2.05271 2.57387 3.03214 3.14012 3.23834 3.35584 3.49931 3.67297 3.68981 3.78623 3.89185 3.96880 4.01038 4.04811 4.20049 4.31593 4.36263 4.41662 4.44312 4.46202 4.54730 4.56394 4.57343 4.63408 4.70235 4.79289 4.81406 4.88620 4.92388 4.96351 5.06208 5.13355 5.15676 5.17837 5.24216 5.31418 5.31549 5.41870 5.51765 5.66520 5.95449 6.28398 6.53681 6.90118 6.98963 7.09470 7.68580 8.25828 8.95212 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.003902 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.906336 B = 7174.305724 C = 8475.451194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.117 3.883 4 N -0.614 5.614 5 C 0.119 3.881 6 C -0.100 4.100 7 H 0.163 0.837 8 C 0.532 3.468 9 O -0.579 6.579 10 N -0.597 5.597 11 C 0.090 3.910 12 C -0.107 4.107 13 C -0.097 4.097 14 H 0.121 0.879 15 C 0.134 3.866 16 N -0.616 5.616 17 C -0.340 4.340 18 H 0.062 0.938 19 C -0.080 4.080 20 N -0.946 5.946 21 Si 1.109 2.891 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.297 1.297 25 C 0.154 3.846 26 C 0.131 3.869 27 H 0.091 0.909 28 C -0.139 4.139 29 C 0.515 3.485 30 O -0.572 6.572 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.041 0.959 45 H 0.015 0.985 46 H 0.256 0.744 47 H -0.003 1.003 48 H 0.002 0.998 49 H 0.081 0.919 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -22.254 0.116 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.004 4.004 4 N -0.346 5.346 5 C -0.003 4.003 6 C -0.121 4.121 7 H 0.181 0.819 8 C 0.321 3.679 9 O -0.459 6.459 10 N -0.328 5.328 11 C -0.031 4.031 12 C -0.144 4.144 13 C -0.116 4.116 14 H 0.139 0.861 15 C 0.009 3.991 16 N -0.342 5.342 17 C -0.469 4.469 18 H 0.080 0.920 19 C -0.276 4.276 20 N -0.589 5.589 21 Si 0.934 3.066 22 H -0.194 1.194 23 H -0.212 1.212 24 H -0.225 1.225 25 C 0.027 3.973 26 C 0.026 3.974 27 H 0.109 0.891 28 C -0.179 4.179 29 C 0.304 3.696 30 O -0.452 6.452 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.059 0.941 45 H 0.033 0.967 46 H 0.066 0.934 47 H 0.014 0.986 48 H 0.020 0.980 49 H 0.100 0.900 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.465 -20.381 -0.109 22.911 hybrid contribution 1.130 -0.153 0.217 1.160 sum -9.336 -20.534 0.108 22.557 Atomic orbital electron populations 1.21685 0.93776 1.02714 1.02333 1.21824 0.97222 0.95494 1.02430 1.21665 0.76605 0.98551 1.03531 1.48454 1.07147 1.72120 1.06884 1.22018 0.87963 1.03446 0.86914 1.22165 0.92645 1.03781 0.93478 0.81935 1.20329 0.82564 0.81393 0.83640 1.90724 1.81892 1.40662 1.32649 1.48325 1.04594 1.45991 1.33939 1.22727 0.96493 0.94741 0.89124 1.22859 0.93934 0.95194 1.02433 1.23078 0.95917 0.96006 0.96649 0.86146 1.21482 0.93355 0.87150 0.97084 1.44477 1.49620 1.15885 1.24234 1.19963 1.43109 0.90058 0.93775 0.91987 1.26955 1.02164 0.99015 0.99456 1.70840 1.43088 1.38211 1.06744 0.82960 0.75505 0.74169 0.73963 1.19399 1.21232 1.22470 1.21216 0.93747 0.94193 0.88165 1.22224 0.86943 0.90999 0.97262 0.89092 1.22342 0.94378 1.05062 0.96149 1.21053 0.89799 0.74502 0.84247 1.90691 1.79318 1.52567 1.22594 0.93025 0.91447 0.91445 0.93204 0.90293 0.88370 0.91554 0.86335 0.91749 0.92299 0.86328 0.87488 0.87544 0.94095 0.96673 0.93361 0.98591 0.97970 0.90034 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.96 6.26 30.59 0.19 -1.77 16 3 C 0.12 2.23 5.93 86.38 0.51 2.75 16 4 N -0.61 -14.13 2.93 -818.00 -2.40 -16.52 16 5 C 0.12 2.52 6.66 86.83 0.58 3.10 16 6 C -0.10 -2.05 2.79 -10.48 -0.03 -2.07 16 7 H 0.16 1.84 7.98 -2.39 -0.02 1.82 16 8 C 0.53 16.33 6.77 87.66 0.59 16.92 16 9 O -0.58 -23.47 15.30 -3.01 -0.05 -23.52 16 10 N -0.60 -17.38 3.02 -785.31 -2.37 -19.74 16 11 C 0.09 1.79 4.99 86.85 0.43 2.22 16 12 C -0.11 -1.77 6.30 31.97 0.20 -1.57 16 13 C -0.10 -2.65 4.25 -9.01 -0.04 -2.69 16 14 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 15 C 0.13 5.05 6.41 86.62 0.56 5.61 16 16 N -0.62 -31.35 3.28 -697.88 -2.29 -33.65 16 17 C -0.34 -19.79 9.98 84.03 0.84 -18.95 16 18 H 0.06 3.56 7.98 -2.91 -0.02 3.54 16 19 C -0.08 -4.81 5.12 84.86 0.43 -4.37 16 20 N -0.95 -61.55 12.97 21.65 0.28 -61.27 16 21 Si 1.11 54.80 30.01 68.60 2.06 56.86 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 25 C 0.15 7.64 5.00 86.66 0.43 8.07 16 26 C 0.13 4.53 3.65 46.06 0.17 4.70 16 27 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 28 C -0.14 -3.35 5.36 30.58 0.16 -3.18 16 29 C 0.52 14.57 8.02 87.90 0.71 15.28 16 30 O -0.57 -20.49 17.59 -3.03 -0.05 -20.55 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.49 7.92 -2.39 -0.02 1.47 16 38 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.79 7.06 -2.39 -0.02 1.77 16 40 H 0.06 1.41 7.46 -2.39 -0.02 1.39 16 41 H 0.12 1.30 7.50 -2.39 -0.02 1.28 16 42 H 0.11 1.41 7.96 -2.38 -0.02 1.39 16 43 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 1.45 6.78 -2.39 -0.02 1.43 16 45 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.26 16.86 5.93 -92.71 -0.55 16.31 16 47 H 0.00 -0.19 6.40 -2.39 -0.02 -0.21 16 48 H 0.00 0.11 7.22 -2.39 -0.02 0.10 16 49 H 0.08 2.58 7.89 -2.39 -0.02 2.56 16 50 H 0.14 2.47 7.70 -2.38 -0.02 2.45 16 Total: -1.00 -86.92 389.18 2.78 -84.14 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.14 Total: 11.23 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 6.46 Total: 23.02 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -6.78 Total: -131.19 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.10 Total: -44.06 kcal Atomic # 14 Polarization: 54.80 SS G_CDS: 2.06 Total: 56.86 kcal Total: -86.92 2.78 -84.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076302995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.990 kcal (2) G-P(sol) polarization free energy of solvation -86.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds