Wall clock time and date at job start Tue Mar 31 2020 19:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46972 * 2 1 4 4 N 1.46499 * 109.47269 * 119.99781 * 2 1 3 5 5 C 1.34420 * 124.34828 * 300.02609 * 4 2 1 6 6 O 1.21280 * 124.94278 * 0.40255 * 5 4 2 7 7 C 1.51290 * 110.11550 * 180.38604 * 5 4 2 8 8 C 1.54623 * 104.19210 * 16.25144 * 7 5 4 9 9 C 1.46761 * 124.35217 * 120.00291 * 4 2 1 10 10 H 1.08997 * 110.24571 * 43.91031 * 9 4 2 11 11 C 1.50707 * 110.24251 * 282.00709 * 9 4 2 12 12 O 1.21286 * 120.00219 * 359.97438 * 11 9 4 13 13 N 1.34776 * 120.00051 * 179.97438 * 11 9 4 14 14 C 1.46624 * 134.54789 * 359.56804 * 13 11 9 15 15 C 1.54650 * 85.48338 * 153.46172 * 14 13 11 16 16 H 1.08999 * 114.43879 * 140.46107 * 15 14 13 17 17 C 1.51980 * 112.19640 * 270.01487 * 15 14 13 18 18 C 1.53106 * 109.84635 * 143.46834 * 17 15 14 19 19 N 1.46617 * 108.05045 * 301.73808 * 18 17 15 20 20 C 1.36938 * 119.88612 * 237.32466 * 19 18 17 21 21 H 1.08001 * 120.00500 * 25.03785 * 20 19 18 22 22 C 1.38811 * 119.99765 * 205.03340 * 20 19 18 23 23 N 1.31622 * 119.99751 * 14.00953 * 22 20 19 24 24 Si 1.86798 * 120.00464 * 194.00493 * 22 20 19 25 25 H 1.48507 * 109.46850 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47247 * 120.00084 * 24 22 20 27 27 H 1.48498 * 109.47203 * 240.00616 * 24 22 20 28 28 C 1.45680 * 120.21734 * 57.30009 * 19 18 17 29 29 C 1.46820 * 135.01327 * 179.97438 * 13 11 9 30 30 H 1.09008 * 111.55565 * 95.13864 * 29 13 11 31 31 H 1.08998 * 109.47141 * 300.00047 * 1 2 3 32 32 H 1.09001 * 109.47204 * 60.00240 * 1 2 3 33 33 H 1.08997 * 109.47062 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47141 * 239.99953 * 2 1 3 35 35 H 1.09001 * 109.46980 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46960 * 299.99909 * 3 2 1 37 37 H 1.08998 * 109.47226 * 60.00005 * 3 2 1 38 38 H 1.08998 * 110.48525 * 134.93041 * 7 5 4 39 39 H 1.08994 * 110.48490 * 257.43941 * 7 5 4 40 40 H 1.09005 * 110.97068 * 217.08245 * 8 7 5 41 41 H 1.09003 * 110.97467 * 93.32704 * 8 7 5 42 42 H 1.09007 * 113.38235 * 39.42962 * 14 13 11 43 43 H 1.09002 * 114.62539 * 267.63511 * 14 13 11 44 44 H 1.09005 * 108.71649 * 23.69918 * 17 15 14 45 45 H 1.08997 * 109.83804 * 263.93256 * 17 15 14 46 46 H 1.09000 * 109.75565 * 182.08004 * 18 17 15 47 47 H 1.09005 * 109.75110 * 61.38672 * 18 17 15 48 48 H 0.97003 * 120.00236 * 179.97438 * 23 22 20 49 49 H 1.08992 * 108.71279 * 81.75219 * 28 19 18 50 50 H 1.09006 * 108.70832 * 199.76687 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7476 -0.3085 2.4562 6 8 1.0637 0.6457 2.7609 7 6 2.4197 -1.2420 3.4388 8 6 3.4719 -1.9924 2.5898 9 6 2.8656 -1.8887 1.1728 10 1 3.6557 -1.7775 0.4302 11 6 2.0348 -3.1091 0.8704 12 8 0.8405 -3.0000 0.6893 13 7 2.6188 -4.3217 0.8013 14 6 3.9925 -4.8119 0.9520 15 6 3.3392 -6.1482 1.3754 16 1 3.8406 -7.0367 0.9918 17 6 3.1002 -6.2208 2.8745 18 6 1.7877 -6.9571 3.1565 19 7 0.7073 -6.2363 2.4763 20 6 -0.3589 -5.7671 3.1963 21 1 -0.2477 -5.5538 4.2491 22 6 -1.5826 -5.5654 2.5728 23 7 -1.8047 -6.0739 1.3792 24 14 -2.9142 -4.5727 3.4276 25 1 -2.4178 -4.1143 4.7501 26 1 -3.2642 -3.3940 2.5951 27 1 -4.1187 -5.4202 3.6172 28 6 0.7644 -6.0174 1.0372 29 6 2.1483 -5.6875 0.5387 30 1 2.2664 -5.9569 -0.5109 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 2.9046 -0.6748 4.2333 39 1 1.6956 -1.9408 3.8575 40 1 3.5558 -3.0331 2.9031 41 1 4.4398 -1.4932 2.6375 42 1 4.5427 -4.3177 1.7527 43 1 4.5574 -4.8733 0.0218 44 1 3.0397 -5.2063 3.2686 45 1 3.9236 -6.7489 3.3552 46 1 1.5993 -6.9761 4.2300 47 1 1.8479 -7.9764 2.7750 48 1 -2.6599 -5.9333 0.9436 49 1 0.4162 -6.9183 0.5323 50 1 0.0954 -5.1956 0.7817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084603905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:58 Heat of formation + Delta-G solvation = 4.220981 kcal Electronic energy + Delta-G solvation = -32299.979003 eV Core-core repulsion = 28329.541399 eV Total energy + Delta-G solvation = -3970.437604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.08381 -40.08555 -37.62659 -35.91159 -35.28976 -34.89548 -32.20806 -30.20883 -30.03197 -29.62744 -27.46806 -27.01032 -26.83859 -23.95263 -23.20557 -22.59917 -22.26335 -21.05890 -19.92211 -18.62190 -17.92537 -17.36270 -16.70861 -16.22601 -15.73997 -15.60942 -15.19531 -14.84262 -14.32432 -14.12628 -13.90169 -13.68741 -13.56007 -13.44070 -13.24487 -13.13180 -13.00978 -12.73049 -12.58512 -12.31587 -12.04482 -11.92905 -11.73389 -11.58016 -11.40322 -11.26582 -11.10747 -11.05978 -10.94921 -10.69838 -10.66622 -10.51292 -10.17487 -9.90715 -9.83499 -9.71471 -9.44047 -9.18723 -8.50814 -8.25565 -8.15192 -6.61768 -5.67432 -3.09575 2.68185 2.93566 3.05316 3.35570 3.47326 3.55492 3.57787 4.34475 4.43261 4.52767 4.58651 4.67410 4.80569 4.99719 5.10623 5.15266 5.15413 5.28661 5.34226 5.40142 5.43537 5.50064 5.57434 5.65156 5.65941 5.69462 5.75403 5.82554 5.85856 5.87813 5.95572 6.09421 6.09977 6.12060 6.25920 6.26886 6.35070 6.49219 6.55150 6.61502 6.75080 6.79040 6.95550 7.24202 7.48035 7.75827 7.92898 8.23689 8.34300 8.55357 8.69926 9.33976 9.97957 10.45406 11.40617 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005907 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.793679 B = 4738.651392 C = 6107.761485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.160 3.840 3 C -0.164 4.164 4 N -0.592 5.592 5 C 0.528 3.472 6 O -0.530 6.530 7 C -0.157 4.157 8 C -0.121 4.121 9 C 0.119 3.881 10 H 0.104 0.896 11 C 0.518 3.482 12 O -0.499 6.499 13 N -0.627 5.627 14 C 0.091 3.909 15 C -0.109 4.109 16 H 0.082 0.918 17 C -0.117 4.117 18 C 0.147 3.853 19 N -0.584 5.584 20 C -0.253 4.253 21 H 0.063 0.937 22 C 0.013 3.987 23 N -0.902 5.902 24 Si 0.897 3.103 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.292 1.292 28 C 0.166 3.834 29 C 0.126 3.874 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.019 0.981 48 H 0.251 0.749 49 H 0.030 0.970 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.563 5.928 -2.962 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.058 3.942 3 C -0.222 4.222 4 N -0.325 5.325 5 C 0.316 3.684 6 O -0.407 6.407 7 C -0.198 4.198 8 C -0.158 4.158 9 C 0.010 3.990 10 H 0.121 0.879 11 C 0.304 3.696 12 O -0.372 6.372 13 N -0.364 5.364 14 C -0.033 4.033 15 C -0.128 4.128 16 H 0.100 0.900 17 C -0.156 4.156 18 C 0.021 3.979 19 N -0.306 5.306 20 C -0.382 4.382 21 H 0.081 0.919 22 C -0.186 4.186 23 N -0.547 5.547 24 Si 0.728 3.272 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.219 1.219 28 C 0.040 3.960 29 C 0.022 3.978 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.037 0.963 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.216 6.786 -3.064 17.844 hybrid contribution -0.598 0.397 0.074 0.721 sum 15.619 7.183 -2.989 17.449 Atomic orbital electron populations 1.22195 0.94212 1.04186 1.02178 1.20859 0.95237 0.92082 0.86008 1.22184 1.00747 0.96090 1.03193 1.48070 1.51386 1.26487 1.06538 1.20738 0.79684 0.84355 0.83581 1.90666 1.39179 1.29482 1.81367 1.22377 0.99596 0.99409 0.98373 1.22618 0.98390 1.03054 0.91785 1.21550 0.92455 0.84904 1.00088 0.87868 1.20347 0.88485 0.82626 0.78178 1.90792 1.14322 1.84336 1.47763 1.49646 1.09608 1.06155 1.71015 1.23398 0.85843 0.93827 1.00230 1.22653 0.96401 0.96087 0.97644 0.89995 1.21669 0.99519 1.01563 0.92882 1.20731 0.87442 0.93137 0.96628 1.43464 1.20773 1.62920 1.03486 1.19095 0.87864 1.37664 0.93579 0.91929 1.24904 0.96893 0.99683 0.97085 1.70005 1.23324 1.46004 1.15372 0.86304 0.81918 0.80034 0.78957 1.20443 1.21500 1.21879 1.20099 0.90012 1.01663 0.84275 1.22737 0.99015 0.78191 0.97821 0.91010 0.91451 0.92299 0.90438 0.90084 0.92822 0.91597 0.91037 0.88012 0.87123 0.88431 0.89296 0.90613 0.90393 0.92261 0.92625 0.92547 0.96279 0.93853 0.95253 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.20 37.16 0.34 -2.47 16 2 C 0.16 2.28 3.33 -67.93 -0.23 2.05 16 3 C -0.16 -1.96 9.20 37.16 0.34 -1.62 16 4 N -0.59 -8.98 2.02 -158.67 -0.32 -9.30 16 5 C 0.53 8.91 7.41 -10.86 -0.08 8.83 16 6 O -0.53 -10.53 15.12 5.56 0.08 -10.44 16 7 C -0.16 -2.15 6.85 -26.74 -0.18 -2.33 16 8 C -0.12 -1.31 6.24 -25.10 -0.16 -1.47 16 9 C 0.12 1.56 3.23 -68.16 -0.22 1.34 16 10 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 11 C 0.52 9.14 7.29 -10.98 -0.08 9.06 16 12 O -0.50 -11.58 14.20 5.55 0.08 -11.50 16 13 N -0.63 -9.93 3.16 -180.44 -0.57 -10.50 16 14 C 0.09 0.99 7.52 -3.65 -0.03 0.96 16 15 C -0.11 -1.47 4.25 -90.62 -0.38 -1.86 16 16 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.12 -1.74 5.71 -27.20 -0.16 -1.89 16 18 C 0.15 2.87 6.48 -3.92 -0.03 2.84 16 19 N -0.58 -14.29 3.02 -175.08 -0.53 -14.82 16 20 C -0.25 -7.05 9.55 -15.06 -0.14 -7.19 16 21 H 0.06 1.73 7.84 -52.49 -0.41 1.32 16 22 C 0.01 0.38 4.96 -17.43 -0.09 0.29 16 23 N -0.90 -27.20 10.91 55.49 0.61 -26.59 16 24 Si 0.90 23.57 29.58 -169.99 -5.03 18.54 16 25 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 C 0.17 3.95 4.61 -5.62 -0.03 3.93 16 29 C 0.13 2.22 4.29 -69.61 -0.30 1.93 16 30 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 31 H 0.07 1.24 6.77 -51.93 -0.35 0.89 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.55 6.82 -51.93 -0.35 1.19 16 34 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.01 6.80 -51.93 -0.35 0.66 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.10 1.08 5.69 -51.93 -0.30 0.79 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.68 6.45 -51.93 -0.33 0.34 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.94 7.19 -51.93 -0.37 0.57 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.09 7.88 -51.93 -0.41 0.69 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.03 0.77 7.97 -51.93 -0.41 0.36 16 50 H 0.11 3.01 4.83 -51.93 -0.25 2.76 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -35.63 381.76 -9.51 -45.14 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.18 Total: 1.30 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -1.41 Total: 12.42 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.82 Total: -61.21 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.16 Total: -21.95 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.03 Total: 18.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.63 -9.51 -45.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084603905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.362 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds