Wall clock time and date at job start Tue Mar 31 2020 19:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46972 * 2 1 4 4 N 1.46499 * 109.47269 * 119.99781 * 2 1 3 5 5 C 1.34420 * 124.34828 * 300.02609 * 4 2 1 6 6 O 1.21280 * 124.94278 * 0.40255 * 5 4 2 7 7 C 1.51290 * 110.11550 * 180.38604 * 5 4 2 8 8 C 1.54623 * 104.19210 * 16.25144 * 7 5 4 9 9 C 1.46761 * 124.35217 * 120.00291 * 4 2 1 10 10 H 1.08997 * 110.24571 * 43.91031 * 9 4 2 11 11 C 1.50707 * 110.24251 * 282.00709 * 9 4 2 12 12 O 1.21286 * 120.00219 * 359.97438 * 11 9 4 13 13 N 1.34776 * 120.00051 * 179.97438 * 11 9 4 14 14 C 1.46624 * 134.54789 * 359.56804 * 13 11 9 15 15 C 1.54650 * 85.48338 * 153.46172 * 14 13 11 16 16 H 1.08999 * 114.43879 * 140.46107 * 15 14 13 17 17 C 1.51980 * 112.19640 * 270.01487 * 15 14 13 18 18 C 1.53106 * 109.84635 * 143.46834 * 17 15 14 19 19 N 1.46617 * 108.05045 * 301.73808 * 18 17 15 20 20 C 1.36938 * 119.88612 * 237.32466 * 19 18 17 21 21 H 1.08001 * 120.00500 * 25.03785 * 20 19 18 22 22 C 1.38811 * 119.99765 * 205.03340 * 20 19 18 23 23 N 1.31622 * 119.99751 * 14.00953 * 22 20 19 24 24 Si 1.86798 * 120.00464 * 194.00493 * 22 20 19 25 25 H 1.48507 * 109.46850 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47247 * 120.00084 * 24 22 20 27 27 H 1.48498 * 109.47203 * 240.00616 * 24 22 20 28 28 C 1.45680 * 120.21734 * 57.30009 * 19 18 17 29 29 C 1.46820 * 135.01327 * 179.97438 * 13 11 9 30 30 H 1.09008 * 111.55565 * 95.13864 * 29 13 11 31 31 H 1.08998 * 109.47141 * 300.00047 * 1 2 3 32 32 H 1.09001 * 109.47204 * 60.00240 * 1 2 3 33 33 H 1.08997 * 109.47062 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47141 * 239.99953 * 2 1 3 35 35 H 1.09001 * 109.46980 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46960 * 299.99909 * 3 2 1 37 37 H 1.08998 * 109.47226 * 60.00005 * 3 2 1 38 38 H 1.08998 * 110.48525 * 134.93041 * 7 5 4 39 39 H 1.08994 * 110.48490 * 257.43941 * 7 5 4 40 40 H 1.09005 * 110.97068 * 217.08245 * 8 7 5 41 41 H 1.09003 * 110.97467 * 93.32704 * 8 7 5 42 42 H 1.09007 * 113.38235 * 39.42962 * 14 13 11 43 43 H 1.09002 * 114.62539 * 267.63511 * 14 13 11 44 44 H 1.09005 * 108.71649 * 23.69918 * 17 15 14 45 45 H 1.08997 * 109.83804 * 263.93256 * 17 15 14 46 46 H 1.09000 * 109.75565 * 182.08004 * 18 17 15 47 47 H 1.09005 * 109.75110 * 61.38672 * 18 17 15 48 48 H 0.97003 * 120.00236 * 179.97438 * 23 22 20 49 49 H 1.08992 * 108.71279 * 81.75219 * 28 19 18 50 50 H 1.09006 * 108.70832 * 199.76687 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7476 -0.3085 2.4562 6 8 1.0637 0.6457 2.7609 7 6 2.4197 -1.2420 3.4388 8 6 3.4719 -1.9924 2.5898 9 6 2.8656 -1.8887 1.1728 10 1 3.6557 -1.7775 0.4302 11 6 2.0348 -3.1091 0.8704 12 8 0.8405 -3.0000 0.6893 13 7 2.6188 -4.3217 0.8013 14 6 3.9925 -4.8119 0.9520 15 6 3.3392 -6.1482 1.3754 16 1 3.8406 -7.0367 0.9918 17 6 3.1002 -6.2208 2.8745 18 6 1.7877 -6.9571 3.1565 19 7 0.7073 -6.2363 2.4763 20 6 -0.3589 -5.7671 3.1963 21 1 -0.2477 -5.5538 4.2491 22 6 -1.5826 -5.5654 2.5728 23 7 -1.8047 -6.0739 1.3792 24 14 -2.9142 -4.5727 3.4276 25 1 -2.4178 -4.1143 4.7501 26 1 -3.2642 -3.3940 2.5951 27 1 -4.1187 -5.4202 3.6172 28 6 0.7644 -6.0174 1.0372 29 6 2.1483 -5.6875 0.5387 30 1 2.2664 -5.9569 -0.5109 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 2.9046 -0.6748 4.2333 39 1 1.6956 -1.9408 3.8575 40 1 3.5558 -3.0331 2.9031 41 1 4.4398 -1.4932 2.6375 42 1 4.5427 -4.3177 1.7527 43 1 4.5574 -4.8733 0.0218 44 1 3.0397 -5.2063 3.2686 45 1 3.9236 -6.7489 3.3552 46 1 1.5993 -6.9761 4.2300 47 1 1.8479 -7.9764 2.7750 48 1 -2.6599 -5.9333 0.9436 49 1 0.4162 -6.9183 0.5323 50 1 0.0954 -5.1956 0.7817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084603905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:57 Heat of formation + Delta-G solvation = -20.683373 kcal Electronic energy + Delta-G solvation = -32301.058937 eV Core-core repulsion = 28329.541399 eV Total energy + Delta-G solvation = -3971.517538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.27951 -41.31466 -39.02768 -37.23789 -37.03048 -36.01700 -33.98723 -31.92213 -31.21059 -30.93711 -28.93361 -28.19350 -28.15510 -25.70640 -24.56882 -23.75661 -23.39124 -22.53763 -21.19108 -19.85438 -19.50144 -18.74569 -17.86358 -17.73731 -17.26299 -16.98812 -16.40193 -16.27156 -16.02419 -15.59944 -15.30527 -15.08444 -14.88779 -14.67869 -14.53661 -14.50595 -14.28539 -14.06369 -13.93027 -13.69850 -13.48042 -13.16942 -13.06256 -12.90887 -12.77105 -12.68335 -12.50564 -12.41282 -12.24365 -12.22826 -12.13418 -12.11771 -11.97234 -11.70218 -11.38150 -11.15475 -10.76022 -10.67402 -10.45127 -9.64581 -9.40838 -8.67551 -7.88273 -5.29998 1.27621 1.35832 1.39077 1.41973 1.79439 1.84136 2.19589 2.42797 3.26181 3.28944 3.43958 3.51577 3.54879 3.74995 3.85310 3.93729 4.05791 4.07932 4.13752 4.23679 4.32281 4.42382 4.51927 4.58870 4.61283 4.66854 4.69433 4.71457 4.73844 4.83122 4.83760 4.85384 4.91090 4.95734 5.00902 5.04959 5.13602 5.16448 5.24243 5.28643 5.39500 5.49234 5.57031 5.61261 5.77093 5.86978 6.07749 6.38394 7.02278 7.10462 7.18230 7.43329 7.96932 8.34055 9.15587 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005907 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.793679 B = 4738.651392 C = 6107.761485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 C -0.151 4.151 4 N -0.592 5.592 5 C 0.510 3.490 6 O -0.574 6.574 7 C -0.157 4.157 8 C -0.103 4.103 9 C 0.122 3.878 10 H 0.152 0.848 11 C 0.505 3.495 12 O -0.574 6.574 13 N -0.629 5.629 14 C 0.109 3.891 15 C -0.102 4.102 16 H 0.116 0.884 17 C -0.105 4.105 18 C 0.137 3.863 19 N -0.599 5.599 20 C -0.244 4.244 21 H 0.062 0.938 22 C -0.042 4.042 23 N -0.931 5.931 24 Si 0.942 3.058 25 H -0.267 1.267 26 H -0.313 1.313 27 H -0.283 1.283 28 C 0.180 3.820 29 C 0.110 3.890 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.141 0.859 42 H 0.111 0.889 43 H 0.119 0.881 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.051 0.949 47 H 0.023 0.977 48 H 0.241 0.759 49 H -0.013 1.013 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.587 6.121 -2.853 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 C -0.209 4.209 4 N -0.323 5.323 5 C 0.300 3.700 6 O -0.454 6.454 7 C -0.197 4.197 8 C -0.141 4.141 9 C 0.014 3.986 10 H 0.170 0.830 11 C 0.293 3.707 12 O -0.452 6.452 13 N -0.365 5.365 14 C -0.012 4.012 15 C -0.121 4.121 16 H 0.134 0.866 17 C -0.144 4.144 18 C 0.012 3.988 19 N -0.323 5.323 20 C -0.375 4.375 21 H 0.080 0.920 22 C -0.237 4.237 23 N -0.578 5.578 24 Si 0.773 3.227 25 H -0.191 1.191 26 H -0.242 1.242 27 H -0.210 1.210 28 C 0.053 3.947 29 C 0.006 3.994 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.147 0.853 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.159 0.841 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.070 0.930 45 H 0.120 0.880 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.005 0.995 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.346 6.923 -2.929 23.577 hybrid contribution -2.518 0.226 0.046 2.529 sum 19.828 7.149 -2.884 21.274 Atomic orbital electron populations 1.22112 0.96988 1.01089 1.01953 1.21013 0.93108 0.94033 0.86590 1.22067 1.02120 0.93888 1.02784 1.48256 1.51091 1.26752 1.06240 1.21426 0.79392 0.84289 0.84890 1.90630 1.40999 1.31558 1.82222 1.22397 0.99804 0.98642 0.98894 1.22742 0.99234 1.03418 0.88684 1.21850 0.92011 0.81620 1.03093 0.83050 1.21330 0.88136 0.84282 0.76960 1.90795 1.17778 1.85576 1.51047 1.49785 1.12068 1.04832 1.69790 1.23688 0.83415 0.90800 1.03260 1.22658 0.94177 0.99364 0.95853 0.86586 1.21549 0.97618 1.00804 0.94400 1.21011 0.88410 0.93552 0.95854 1.43699 1.21168 1.63644 1.03760 1.19377 0.88720 1.35659 0.93709 0.92025 1.25470 0.98879 1.01499 0.97877 1.70162 1.23046 1.47978 1.16635 0.85571 0.80705 0.78215 0.78245 1.19101 1.24154 1.21005 1.19673 0.93389 0.97802 0.83796 1.22612 0.96724 0.80776 0.99333 0.89659 0.94296 0.89847 0.94815 0.88176 0.90335 0.89655 0.93756 0.85277 0.90458 0.88025 0.84059 0.87083 0.86362 0.93048 0.88047 0.93064 0.95933 0.94956 0.99529 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.77 9.20 71.98 0.66 -5.11 16 2 C 0.15 4.29 3.33 44.99 0.15 4.44 16 3 C -0.15 -3.32 9.20 71.98 0.66 -2.66 16 4 N -0.59 -17.32 2.02 -774.51 -1.57 -18.88 16 5 C 0.51 17.28 7.41 87.90 0.65 17.93 16 6 O -0.57 -23.80 15.12 -3.03 -0.05 -23.84 16 7 C -0.16 -4.05 6.85 30.59 0.21 -3.84 16 8 C -0.10 -1.73 6.24 31.65 0.20 -1.53 16 9 C 0.12 2.78 3.23 44.70 0.14 2.92 16 10 H 0.15 2.07 8.14 -2.39 -0.02 2.06 16 11 C 0.50 17.31 7.29 87.66 0.64 17.95 16 12 O -0.57 -28.18 14.20 -3.05 -0.04 -28.22 16 13 N -0.63 -18.15 3.16 -843.19 -2.67 -20.82 16 14 C 0.11 1.64 7.52 86.56 0.65 2.29 16 15 C -0.10 -2.24 4.25 -10.62 -0.05 -2.28 16 16 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 17 C -0.10 -2.64 5.71 30.29 0.17 -2.47 16 18 C 0.14 5.14 6.48 86.39 0.56 5.70 16 19 N -0.60 -30.10 3.02 -707.84 -2.14 -32.24 16 20 C -0.24 -14.17 9.55 84.03 0.80 -13.37 16 21 H 0.06 3.52 7.84 -2.91 -0.02 3.49 16 22 C -0.04 -2.58 4.96 84.86 0.42 -2.16 16 23 N -0.93 -60.25 10.91 21.65 0.24 -60.01 16 24 Si 0.94 51.37 29.58 68.60 2.03 53.40 16 25 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.31 -18.18 7.11 99.48 0.71 -17.48 16 27 H -0.28 -14.89 7.11 99.48 0.71 -14.19 16 28 C 0.18 8.98 4.61 85.80 0.40 9.38 16 29 C 0.11 3.74 4.29 43.73 0.19 3.93 16 30 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.04 1.56 6.77 -2.39 -0.02 1.54 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.03 1.47 6.82 -2.39 -0.02 1.45 16 34 H 0.10 2.39 8.07 -2.39 -0.02 2.37 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.24 6.80 -2.39 -0.02 1.22 16 38 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.10 1.69 5.69 -2.38 -0.01 1.67 16 41 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.00 6.45 -2.38 -0.02 0.99 16 43 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 1.40 7.19 -2.38 -0.02 1.38 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.94 7.88 -2.39 -0.02 1.92 16 47 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.24 15.45 8.31 -92.71 -0.77 14.68 16 49 H -0.01 -0.73 7.97 -2.39 -0.02 -0.75 16 50 H 0.05 3.22 4.83 -2.38 -0.01 3.21 16 Total: -1.00 -92.94 381.76 3.20 -89.74 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.93 Total: 9.76 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 6.46 Total: 31.11 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -6.14 Total: -131.95 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.06 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.03 Total: 53.40 kcal Total: -92.94 3.20 -89.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084603905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.058 kcal (2) G-P(sol) polarization free energy of solvation -92.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds