Wall clock time and date at job start Tue Mar 31 2020 18:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 H 1.09001 * 109.47633 * 56.46869 * 3 2 1 5 5 C 1.50704 * 109.47479 * 176.46817 * 3 2 1 6 6 O 1.21276 * 120.00020 * 103.36808 * 5 3 2 7 7 N 1.34779 * 119.99883 * 283.37103 * 5 3 2 8 8 C 1.47292 * 136.54317 * 4.51166 * 7 5 3 9 9 C 1.54357 * 87.50241 * 151.47441 * 8 7 5 10 10 H 1.09000 * 115.78851 * 141.80317 * 9 8 7 11 11 C 1.53063 * 111.57145 * 274.16782 * 9 8 7 12 12 C 1.53152 * 109.21091 * 142.38112 * 11 9 8 13 13 N 1.46543 * 108.25373 * 301.59121 * 12 11 9 14 14 C 1.36930 * 119.73588 * 236.40149 * 13 12 11 15 15 H 1.07999 * 120.00722 * 29.13577 * 14 13 12 16 16 C 1.38818 * 119.99714 * 209.13492 * 14 13 12 17 17 N 1.31621 * 120.00270 * 10.45698 * 16 14 13 18 18 Si 1.86800 * 120.00093 * 190.45622 * 16 14 13 19 19 H 1.48500 * 109.47111 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47110 * 119.99959 * 18 16 14 21 21 H 1.48497 * 109.47275 * 240.00090 * 18 16 14 22 22 C 1.45694 * 120.52234 * 56.41822 * 13 12 11 23 23 C 1.46460 * 136.54360 * 184.88266 * 7 5 3 24 24 H 1.08999 * 111.44440 * 97.06233 * 23 7 5 25 25 N 1.46496 * 109.47256 * 296.46798 * 3 2 1 26 26 C 1.46764 * 124.35329 * 119.99640 * 25 3 2 27 27 C 1.54475 * 105.47720 * 162.98182 * 26 25 3 28 28 C 1.54631 * 101.76090 * 25.42201 * 27 26 25 29 29 C 1.34741 * 124.29899 * 299.96297 * 25 3 2 30 30 O 1.21286 * 125.12519 * 0.40446 * 29 25 3 31 31 H 1.08995 * 109.46923 * 60.00076 * 1 2 3 32 32 H 1.08993 * 109.47138 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47289 * 300.00021 * 1 2 3 34 34 H 1.09002 * 109.47289 * 239.99979 * 2 1 3 35 35 H 1.08998 * 109.47344 * 119.99643 * 2 1 3 36 36 H 1.08993 * 113.52537 * 266.10183 * 8 7 5 37 37 H 1.09000 * 113.52886 * 36.73300 * 8 7 5 38 38 H 1.08992 * 109.51941 * 22.46297 * 11 9 8 39 39 H 1.09000 * 109.51571 * 262.29622 * 11 9 8 40 40 H 1.08994 * 109.70743 * 181.90171 * 12 11 9 41 41 H 1.08996 * 109.74163 * 61.29831 * 12 11 9 42 42 H 0.96994 * 120.00408 * 180.02562 * 17 16 14 43 43 H 1.09000 * 108.79092 * 199.11275 * 22 13 12 44 44 H 1.09003 * 108.79261 * 80.89998 * 22 13 12 45 45 H 1.09009 * 110.24387 * 43.98667 * 26 25 3 46 46 H 1.09001 * 110.32268 * 282.02803 * 26 25 3 47 47 H 1.09000 * 110.97573 * 267.30061 * 27 26 25 48 48 H 1.08997 * 110.96971 * 143.53496 * 27 26 25 49 49 H 1.09000 * 110.48694 * 93.88164 * 28 27 26 50 50 H 1.09002 * 110.48297 * 216.38979 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6259 1.9743 0.8566 5 6 3.5445 1.4435 0.0875 6 8 4.2093 1.6657 -0.9021 7 7 4.1511 1.1973 1.2656 8 6 3.7316 0.8170 2.6254 9 6 5.1059 0.1325 2.7850 10 1 5.5706 0.2250 3.7666 11 6 5.0886 -1.2981 2.2410 12 6 6.4261 -1.5928 1.5556 13 7 6.6183 -0.6124 0.4835 14 6 6.8249 -1.0416 -0.8003 15 1 6.4043 -1.9799 -1.1304 16 6 7.5752 -0.2705 -1.6776 17 7 8.2569 0.7620 -1.2285 18 14 7.6171 -0.6981 -3.4955 19 1 6.7722 -1.8941 -3.7423 20 1 7.0966 0.4466 -4.2855 21 1 9.0154 -0.9864 -3.9041 22 6 6.5916 0.8153 0.7728 23 6 5.5247 1.1936 1.7738 24 1 5.7671 2.1312 2.2740 25 7 1.6224 2.1081 -1.2364 26 6 0.7759 3.3059 -1.2869 27 6 0.9631 3.8834 -2.7074 28 6 1.3681 2.6244 -3.5086 29 6 1.9672 1.6987 -2.4729 30 8 2.6556 0.7314 -2.7211 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5897 1.6683 3.2910 37 1 2.8925 0.1215 2.6433 38 1 4.2787 -1.4035 1.5192 39 1 4.9385 -1.9984 3.0627 40 1 6.4101 -2.5984 1.1355 41 1 7.2368 -1.5096 2.2793 42 1 8.7808 1.3010 -1.8416 43 1 6.4109 1.3582 -0.1549 44 1 7.5637 1.1119 1.1668 45 1 1.1015 4.0297 -0.5396 46 1 -0.2681 3.0389 -1.1228 47 1 1.7582 4.6288 -2.7239 48 1 0.0301 4.3022 -3.0843 49 1 0.4921 2.1667 -3.9683 50 1 2.1080 2.8772 -4.2680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084840667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:04 Heat of formation + Delta-G solvation = 10.016416 kcal Electronic energy + Delta-G solvation = -32194.228914 eV Core-core repulsion = 28224.042619 eV Total energy + Delta-G solvation = -3970.186295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.76872 -40.01363 -37.43711 -36.06703 -35.09628 -34.64611 -32.01766 -30.95038 -30.03485 -29.25866 -27.49458 -26.99160 -26.40385 -23.74241 -22.81858 -22.20376 -21.86571 -21.03554 -20.23490 -18.70328 -17.64213 -16.97302 -16.82940 -16.34210 -15.86949 -15.61094 -15.11199 -14.59220 -14.40188 -14.12209 -13.71690 -13.62459 -13.51866 -13.30076 -13.27924 -13.08697 -12.91495 -12.64736 -12.53251 -12.46785 -12.17870 -11.91631 -11.70334 -11.57457 -11.34100 -11.13482 -11.09832 -10.95009 -10.88240 -10.56585 -10.54354 -10.35797 -10.05855 -9.77051 -9.67628 -9.50584 -9.28380 -9.01418 -8.38781 -8.14008 -7.97400 -6.41372 -5.52753 -2.98326 2.78160 3.11721 3.27637 3.55049 3.57724 3.67880 3.69836 4.41345 4.44005 4.70662 4.71594 4.75076 4.77522 4.94960 4.95994 5.10408 5.22050 5.28050 5.33833 5.39821 5.45764 5.49932 5.58329 5.60779 5.62306 5.70366 5.73109 5.78640 5.81679 5.91045 5.92307 5.96863 6.07417 6.18932 6.20933 6.31959 6.39472 6.47764 6.59811 6.65754 6.73918 6.88008 7.09090 7.35854 7.60097 7.90464 8.06990 8.44139 8.56310 8.72583 8.92295 9.49679 10.12538 10.60703 11.55333 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.005854 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.575463 B = 4782.001787 C = 6377.364859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.155 3.845 4 H 0.098 0.902 5 C 0.524 3.476 6 O -0.483 6.483 7 N -0.635 5.635 8 C 0.094 3.906 9 C -0.113 4.113 10 H 0.090 0.910 11 C -0.115 4.115 12 C 0.149 3.851 13 N -0.582 5.582 14 C -0.244 4.244 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.908 5.908 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.294 1.294 22 C 0.170 3.830 23 C 0.119 3.881 24 H 0.069 0.931 25 N -0.614 5.614 26 C 0.108 3.892 27 C -0.130 4.130 28 C -0.155 4.155 29 C 0.519 3.481 30 O -0.489 6.489 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.249 0.751 43 H 0.099 0.901 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.347 5.821 7.954 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.048 3.952 4 H 0.116 0.884 5 C 0.310 3.690 6 O -0.354 6.354 7 N -0.373 5.373 8 C -0.030 4.030 9 C -0.132 4.132 10 H 0.108 0.892 11 C -0.154 4.154 12 C 0.022 3.978 13 N -0.304 5.304 14 C -0.374 4.374 15 H 0.077 0.923 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.734 3.266 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.221 1.221 22 C 0.044 3.956 23 C 0.015 3.985 24 H 0.087 0.913 25 N -0.351 5.351 26 C -0.015 4.015 27 C -0.168 4.168 28 C -0.196 4.196 29 C 0.306 3.694 30 O -0.360 6.360 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.117 0.883 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.579 5.543 6.945 20.594 hybrid contribution -0.089 0.166 -0.728 0.752 sum -18.668 5.709 6.217 20.488 Atomic orbital electron populations 1.21689 0.95095 1.01691 1.01412 1.21819 0.96227 0.94576 1.04537 1.20725 0.92507 0.95078 0.86933 0.88439 1.20105 0.89184 0.77918 0.81812 1.90847 1.65251 1.45892 1.33435 1.49426 1.10412 1.70041 1.07423 1.23361 0.98349 0.97809 0.83485 1.22802 0.95436 0.96279 0.98720 0.89199 1.21836 1.01482 0.93104 0.99028 1.20718 0.92538 0.93684 0.90860 1.43391 1.83536 0.99780 1.03685 1.19062 1.25391 1.05904 0.87023 0.92349 1.24971 0.96618 0.98407 0.98403 1.69992 1.32328 1.19778 1.33158 0.86206 0.76395 0.77948 0.86100 1.20437 1.21617 1.22136 1.20146 0.91767 0.85975 0.97717 1.22643 0.85161 0.96503 0.94187 0.91334 1.48023 1.51957 1.29687 1.05405 1.22001 0.94432 0.86752 0.98321 1.22555 1.02855 0.97325 0.94044 1.22311 1.02771 0.96026 0.98443 1.20758 0.79535 0.85456 0.83635 1.90820 1.35089 1.27825 1.82294 0.92774 0.92483 0.92987 0.89516 0.90582 0.90739 0.91202 0.92137 0.92820 0.92698 0.96401 0.94079 0.88279 0.95442 0.90919 0.91341 0.90029 0.89469 0.88334 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.79 37.16 0.36 -1.13 16 2 C -0.13 -1.91 5.33 -26.73 -0.14 -2.06 16 3 C 0.15 2.33 2.54 -69.08 -0.18 2.15 16 4 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 5 C 0.52 10.70 7.17 -10.98 -0.08 10.62 16 6 O -0.48 -12.78 13.38 -15.19 -0.20 -12.98 16 7 N -0.63 -11.66 3.33 -187.52 -0.62 -12.28 16 8 C 0.09 1.23 7.78 -11.40 -0.09 1.14 16 9 C -0.11 -1.76 4.57 -90.16 -0.41 -2.17 16 10 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.12 -1.98 5.71 -26.62 -0.15 -2.14 16 12 C 0.15 3.23 6.46 -3.94 -0.03 3.20 16 13 N -0.58 -15.62 3.02 -174.89 -0.53 -16.15 16 14 C -0.24 -7.44 9.48 -15.06 -0.14 -7.58 16 15 H 0.06 1.79 7.84 -52.49 -0.41 1.38 16 16 C 0.01 0.44 5.02 -17.43 -0.09 0.36 16 17 N -0.91 -28.91 10.96 55.49 0.61 -28.30 16 18 Si 0.90 25.26 29.57 -169.99 -5.03 20.24 16 19 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 20 H -0.29 -8.36 7.11 56.52 0.40 -7.96 16 21 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 22 C 0.17 4.42 4.54 -5.43 -0.02 4.39 16 23 C 0.12 2.34 4.03 -77.69 -0.31 2.03 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 N -0.61 -8.93 2.13 -166.07 -0.35 -9.29 16 26 C 0.11 1.03 7.30 -3.12 -0.02 1.00 16 27 C -0.13 -1.15 7.18 -25.10 -0.18 -1.33 16 28 C -0.16 -1.89 6.85 -26.74 -0.18 -2.08 16 29 C 0.52 9.20 6.72 -10.72 -0.07 9.13 16 30 O -0.49 -11.61 14.85 -15.20 -0.23 -11.83 16 31 H 0.05 0.58 7.71 -51.93 -0.40 0.18 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 1.62 6.68 -51.93 -0.35 1.28 16 35 H 0.08 1.04 7.06 -51.93 -0.37 0.68 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.80 7.00 -51.93 -0.36 0.44 16 38 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.19 7.89 -51.93 -0.41 0.78 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.10 3.06 5.11 -51.93 -0.27 2.79 16 44 H 0.03 0.77 7.95 -51.93 -0.41 0.36 16 45 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -40.19 386.19 -10.70 -50.89 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.43 Total: -1.66 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -1.74 Total: 15.54 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.90 Total: -66.02 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.43 Total: -24.82 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.03 Total: 20.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.19 -10.70 -50.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084840667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.904 kcal (2) G-P(sol) polarization free energy of solvation -40.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds