Wall clock time and date at job start Tue Mar 31 2020 18:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 H 1.09001 * 109.47633 * 56.46869 * 3 2 1 5 5 C 1.50704 * 109.47479 * 176.46817 * 3 2 1 6 6 O 1.21276 * 120.00020 * 103.36808 * 5 3 2 7 7 N 1.34779 * 119.99883 * 283.37103 * 5 3 2 8 8 C 1.47292 * 136.54317 * 4.51166 * 7 5 3 9 9 C 1.54357 * 87.50241 * 151.47441 * 8 7 5 10 10 H 1.09000 * 115.78851 * 141.80317 * 9 8 7 11 11 C 1.53063 * 111.57145 * 274.16782 * 9 8 7 12 12 C 1.53152 * 109.21091 * 142.38112 * 11 9 8 13 13 N 1.46543 * 108.25373 * 301.59121 * 12 11 9 14 14 C 1.36930 * 119.73588 * 236.40149 * 13 12 11 15 15 H 1.07999 * 120.00722 * 29.13577 * 14 13 12 16 16 C 1.38818 * 119.99714 * 209.13492 * 14 13 12 17 17 N 1.31621 * 120.00270 * 10.45698 * 16 14 13 18 18 Si 1.86800 * 120.00093 * 190.45622 * 16 14 13 19 19 H 1.48500 * 109.47111 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47110 * 119.99959 * 18 16 14 21 21 H 1.48497 * 109.47275 * 240.00090 * 18 16 14 22 22 C 1.45694 * 120.52234 * 56.41822 * 13 12 11 23 23 C 1.46460 * 136.54360 * 184.88266 * 7 5 3 24 24 H 1.08999 * 111.44440 * 97.06233 * 23 7 5 25 25 N 1.46496 * 109.47256 * 296.46798 * 3 2 1 26 26 C 1.46764 * 124.35329 * 119.99640 * 25 3 2 27 27 C 1.54475 * 105.47720 * 162.98182 * 26 25 3 28 28 C 1.54631 * 101.76090 * 25.42201 * 27 26 25 29 29 C 1.34741 * 124.29899 * 299.96297 * 25 3 2 30 30 O 1.21286 * 125.12519 * 0.40446 * 29 25 3 31 31 H 1.08995 * 109.46923 * 60.00076 * 1 2 3 32 32 H 1.08993 * 109.47138 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47289 * 300.00021 * 1 2 3 34 34 H 1.09002 * 109.47289 * 239.99979 * 2 1 3 35 35 H 1.08998 * 109.47344 * 119.99643 * 2 1 3 36 36 H 1.08993 * 113.52537 * 266.10183 * 8 7 5 37 37 H 1.09000 * 113.52886 * 36.73300 * 8 7 5 38 38 H 1.08992 * 109.51941 * 22.46297 * 11 9 8 39 39 H 1.09000 * 109.51571 * 262.29622 * 11 9 8 40 40 H 1.08994 * 109.70743 * 181.90171 * 12 11 9 41 41 H 1.08996 * 109.74163 * 61.29831 * 12 11 9 42 42 H 0.96994 * 120.00408 * 180.02562 * 17 16 14 43 43 H 1.09000 * 108.79092 * 199.11275 * 22 13 12 44 44 H 1.09003 * 108.79261 * 80.89998 * 22 13 12 45 45 H 1.09009 * 110.24387 * 43.98667 * 26 25 3 46 46 H 1.09001 * 110.32268 * 282.02803 * 26 25 3 47 47 H 1.09000 * 110.97573 * 267.30061 * 27 26 25 48 48 H 1.08997 * 110.96971 * 143.53496 * 27 26 25 49 49 H 1.09000 * 110.48694 * 93.88164 * 28 27 26 50 50 H 1.09002 * 110.48297 * 216.38979 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6259 1.9743 0.8566 5 6 3.5445 1.4435 0.0875 6 8 4.2093 1.6657 -0.9021 7 7 4.1511 1.1973 1.2656 8 6 3.7316 0.8170 2.6254 9 6 5.1059 0.1325 2.7850 10 1 5.5706 0.2250 3.7666 11 6 5.0886 -1.2981 2.2410 12 6 6.4261 -1.5928 1.5556 13 7 6.6183 -0.6124 0.4835 14 6 6.8249 -1.0416 -0.8003 15 1 6.4043 -1.9799 -1.1304 16 6 7.5752 -0.2705 -1.6776 17 7 8.2569 0.7620 -1.2285 18 14 7.6171 -0.6981 -3.4955 19 1 6.7722 -1.8941 -3.7423 20 1 7.0966 0.4466 -4.2855 21 1 9.0154 -0.9864 -3.9041 22 6 6.5916 0.8153 0.7728 23 6 5.5247 1.1936 1.7738 24 1 5.7671 2.1312 2.2740 25 7 1.6224 2.1081 -1.2364 26 6 0.7759 3.3059 -1.2869 27 6 0.9631 3.8834 -2.7074 28 6 1.3681 2.6244 -3.5086 29 6 1.9672 1.6987 -2.4729 30 8 2.6556 0.7314 -2.7211 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5897 1.6683 3.2910 37 1 2.8925 0.1215 2.6433 38 1 4.2787 -1.4035 1.5192 39 1 4.9385 -1.9984 3.0627 40 1 6.4101 -2.5984 1.1355 41 1 7.2368 -1.5096 2.2793 42 1 8.7808 1.3010 -1.8416 43 1 6.4109 1.3582 -0.1549 44 1 7.5637 1.1119 1.1668 45 1 1.1015 4.0297 -0.5396 46 1 -0.2681 3.0389 -1.1228 47 1 1.7582 4.6288 -2.7239 48 1 0.0301 4.3022 -3.0843 49 1 0.4921 2.1667 -3.9683 50 1 2.1080 2.8772 -4.2680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084840667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:03 Heat of formation + Delta-G solvation = -18.810727 kcal Electronic energy + Delta-G solvation = -32195.478953 eV Core-core repulsion = 28224.042619 eV Total energy + Delta-G solvation = -3971.436334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10464 -41.27884 -38.97730 -37.37915 -37.05270 -35.78162 -33.99529 -31.95162 -31.90135 -30.82516 -28.73673 -28.43808 -27.61877 -25.68921 -24.42088 -23.28577 -22.73062 -22.60626 -21.71089 -20.03777 -19.43861 -18.54060 -17.91222 -17.54999 -17.44116 -17.28350 -16.67680 -16.15665 -15.82621 -15.54300 -15.46788 -15.08519 -14.97957 -14.65203 -14.59571 -14.33302 -14.26567 -14.09863 -13.86867 -13.60397 -13.49571 -13.30458 -13.16659 -12.85995 -12.81893 -12.73983 -12.44278 -12.38276 -12.24314 -12.15835 -12.00195 -11.98282 -11.85884 -11.75484 -11.48561 -11.06720 -10.73056 -10.61232 -10.41045 -9.60931 -9.39997 -8.64967 -7.90180 -5.37076 1.22881 1.33085 1.37945 1.54086 1.82807 1.96508 2.28710 2.41605 3.26147 3.38136 3.44966 3.57861 3.63657 3.71339 3.87119 3.91727 3.98846 4.05883 4.16665 4.25170 4.31852 4.43241 4.47336 4.54642 4.61460 4.64969 4.67261 4.68699 4.76598 4.79565 4.83712 4.86183 4.93844 5.02175 5.04688 5.05565 5.11121 5.15209 5.21767 5.31445 5.33044 5.41865 5.52128 5.63758 5.72926 5.80129 6.23025 6.36976 7.03795 7.16720 7.29505 7.48399 7.93921 8.30664 9.12931 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.005854 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.575463 B = 4782.001787 C = 6377.364859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.126 4.126 3 C 0.161 3.839 4 H 0.147 0.853 5 C 0.508 3.492 6 O -0.563 6.563 7 N -0.642 5.642 8 C 0.111 3.889 9 C -0.103 4.103 10 H 0.132 0.868 11 C -0.104 4.104 12 C 0.139 3.861 13 N -0.599 5.599 14 C -0.247 4.247 15 H 0.046 0.954 16 C -0.039 4.039 17 N -0.931 5.931 18 Si 0.951 3.049 19 H -0.277 1.277 20 H -0.309 1.309 21 H -0.273 1.273 22 C 0.185 3.815 23 C 0.103 3.897 24 H 0.092 0.908 25 N -0.612 5.612 26 C 0.101 3.899 27 C -0.118 4.118 28 C -0.153 4.153 29 C 0.498 3.502 30 O -0.570 6.570 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.029 0.971 42 H 0.243 0.757 43 H 0.041 0.959 44 H -0.008 1.008 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.132 0.868 49 H 0.125 0.875 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.670 6.756 11.813 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C 0.054 3.946 4 H 0.165 0.835 5 C 0.296 3.704 6 O -0.440 6.440 7 N -0.379 5.379 8 C -0.010 4.010 9 C -0.122 4.122 10 H 0.150 0.850 11 C -0.143 4.143 12 C 0.014 3.986 13 N -0.322 5.322 14 C -0.378 4.378 15 H 0.064 0.936 16 C -0.234 4.234 17 N -0.578 5.578 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.237 1.237 21 H -0.199 1.199 22 C 0.058 3.942 23 C -0.002 4.002 24 H 0.109 0.891 25 N -0.347 5.347 26 C -0.020 4.020 27 C -0.155 4.155 28 C -0.193 4.193 29 C 0.287 3.713 30 O -0.448 6.448 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.056 0.944 39 H 0.120 0.880 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.010 0.990 45 H 0.107 0.893 46 H 0.127 0.873 47 H 0.089 0.911 48 H 0.150 0.850 49 H 0.143 0.857 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.964 6.484 10.910 26.238 hybrid contribution 1.300 -0.165 -1.879 2.291 sum -21.664 6.319 9.031 24.307 Atomic orbital electron populations 1.21626 0.91504 1.02583 1.02989 1.21744 0.99109 0.93584 1.02048 1.20844 0.88649 0.96329 0.88817 0.83511 1.21255 0.91435 0.76440 0.81275 1.90824 1.67360 1.49485 1.36291 1.49625 1.10123 1.68941 1.09190 1.23602 0.97482 0.99516 0.80367 1.22851 0.97186 0.93502 0.98635 0.85008 1.21703 0.97134 0.95880 0.99533 1.20980 0.95786 0.91987 0.89881 1.43612 1.83728 1.01161 1.03717 1.19234 1.24075 1.05220 0.89248 0.93636 1.25579 0.97376 0.98953 1.01536 1.70136 1.33382 1.20621 1.33623 0.85450 0.77169 0.76878 0.82435 1.20163 1.23688 1.19932 1.19739 0.92723 0.84917 0.96806 1.22662 0.84300 0.99426 0.93825 0.89072 1.48259 1.51401 1.30646 1.04381 1.22448 0.95524 0.85052 0.98957 1.22628 1.04534 0.95191 0.93189 1.22366 1.02918 0.96827 0.97197 1.21785 0.78573 0.85010 0.85915 1.90765 1.38781 1.31439 1.83817 0.93053 0.92081 0.89327 0.95322 0.89848 0.86083 0.88419 0.94444 0.88007 0.93705 0.95303 0.94749 0.94090 0.98992 0.89260 0.87338 0.91082 0.85028 0.85652 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.79 71.98 0.70 -1.58 16 2 C -0.13 -3.49 5.33 30.59 0.16 -3.33 16 3 C 0.16 4.56 2.54 44.25 0.11 4.67 16 4 H 0.15 2.66 8.07 -2.39 -0.02 2.64 16 5 C 0.51 21.10 7.17 87.66 0.63 21.73 16 6 O -0.56 -32.15 13.38 16.83 0.23 -31.92 16 7 N -0.64 -22.71 3.33 -865.58 -2.88 -25.59 16 8 C 0.11 2.30 7.78 81.18 0.63 2.93 16 9 C -0.10 -2.76 4.57 -10.50 -0.05 -2.81 16 10 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 11 C -0.10 -3.29 5.71 30.67 0.17 -3.11 16 12 C 0.14 6.03 6.46 86.42 0.56 6.59 16 13 N -0.60 -33.77 3.02 -707.23 -2.13 -35.90 16 14 C -0.25 -16.03 9.48 84.04 0.80 -15.24 16 15 H 0.05 3.00 7.84 -2.91 -0.02 2.98 16 16 C -0.04 -2.61 5.02 84.86 0.43 -2.18 16 17 N -0.93 -63.56 10.96 21.65 0.24 -63.32 16 18 Si 0.95 55.51 29.57 68.60 2.03 57.53 16 19 H -0.28 -15.81 7.11 99.48 0.71 -15.10 16 20 H -0.31 -18.86 7.11 99.48 0.71 -18.16 16 21 H -0.27 -14.87 7.11 99.48 0.71 -14.17 16 22 C 0.18 10.12 4.54 85.92 0.39 10.51 16 23 C 0.10 3.95 4.03 38.69 0.16 4.11 16 24 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 25 N -0.61 -17.22 2.13 -797.73 -1.70 -18.92 16 26 C 0.10 1.53 7.30 86.83 0.63 2.17 16 27 C -0.12 -1.76 7.18 31.65 0.23 -1.54 16 28 C -0.15 -3.74 6.85 30.59 0.21 -3.53 16 29 C 0.50 18.55 6.72 87.85 0.59 19.14 16 30 O -0.57 -29.83 14.85 16.80 0.25 -29.58 16 31 H 0.05 0.94 7.71 -2.39 -0.02 0.92 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.03 1.13 6.68 -2.39 -0.02 1.11 16 35 H 0.08 2.10 7.06 -2.39 -0.02 2.08 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.58 7.00 -2.39 -0.02 1.56 16 38 H 0.04 1.36 7.69 -2.39 -0.02 1.35 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.04 1.99 7.89 -2.39 -0.02 1.97 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.24 16.20 8.31 -92.71 -0.77 15.43 16 43 H 0.04 2.73 5.11 -2.39 -0.01 2.72 16 44 H -0.01 -0.46 7.95 -2.39 -0.02 -0.48 16 45 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -106.45 386.19 3.30 -103.14 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.92 Total: 6.01 kcal Atomic # 6 Polarization: 32.19 SS G_CDS: 6.36 Total: 38.55 kcal Atomic # 7 Polarization: -137.26 SS G_CDS: -6.48 Total: -143.73 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: 0.47 Total: -61.50 kcal Atomic # 14 Polarization: 55.51 SS G_CDS: 2.03 Total: 57.53 kcal Total: -106.45 3.30 -103.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084840667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.334 kcal (2) G-P(sol) polarization free energy of solvation -106.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds