Wall clock time and date at job start Tue Mar 31 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47246 * 2 1 4 4 H 1.08996 * 109.47310 * 54.99314 * 3 2 1 5 5 C 1.53007 * 109.46820 * 295.00138 * 3 2 1 6 6 C 1.50694 * 109.47633 * 174.99920 * 3 2 1 7 7 C 1.41268 * 126.70590 * 85.25957 * 6 3 2 8 8 C 1.36820 * 103.84782 * 180.10421 * 7 6 3 9 9 C 1.47507 * 126.94672 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99835 * 359.70501 * 9 8 7 11 11 N 1.34774 * 120.00473 * 179.70336 * 9 8 7 12 12 C 1.46501 * 119.99987 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.47152 * 35.00375 * 12 11 9 14 14 C 1.52996 * 109.47264 * 274.99912 * 12 11 9 15 15 C 1.52998 * 109.47048 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47292 * 60.00174 * 15 14 12 17 17 C 1.52996 * 109.47270 * 300.00068 * 16 15 14 18 18 C 1.52998 * 109.47019 * 59.99765 * 17 16 15 19 19 H 1.09000 * 109.47516 * 59.99967 * 18 17 16 20 20 N 1.46506 * 109.47262 * 180.02562 * 18 17 16 21 21 C 1.36938 * 119.99589 * 275.00203 * 20 18 17 22 22 H 1.07999 * 120.00325 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99408 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00325 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99550 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47349 * 59.99998 * 25 23 21 27 27 H 1.48505 * 109.47077 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47093 * 299.99919 * 25 23 21 29 29 O 1.34647 * 106.11171 * 359.66074 * 8 7 6 30 30 N 1.20884 * 111.46681 * 0.23094 * 29 8 7 31 31 H 1.09002 * 109.46937 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46896 * 300.00099 * 1 2 3 33 33 H 1.08996 * 109.46891 * 60.00442 * 1 2 3 34 34 H 1.08997 * 109.47638 * 239.99937 * 2 1 3 35 35 H 1.09004 * 109.47008 * 119.99305 * 2 1 3 36 36 H 1.08991 * 109.47248 * 59.99851 * 5 3 2 37 37 H 1.09002 * 109.47335 * 179.97438 * 5 3 2 38 38 H 1.09006 * 109.46967 * 299.99474 * 5 3 2 39 39 H 1.08007 * 128.07466 * 359.97438 * 7 6 3 40 40 H 0.96997 * 119.99964 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.46909 * 60.00421 * 14 12 11 42 42 H 1.08994 * 109.47414 * 300.00303 * 14 12 11 43 43 H 1.09007 * 109.47327 * 300.00144 * 15 14 12 44 44 H 1.09002 * 109.47121 * 180.02562 * 15 14 12 45 45 H 1.09007 * 109.47213 * 179.97438 * 16 15 14 46 46 H 1.09002 * 109.47283 * 60.00068 * 16 15 14 47 47 H 1.09002 * 109.46968 * 300.00193 * 17 16 15 48 48 H 1.09001 * 109.47247 * 179.97438 * 17 16 15 49 49 H 0.96995 * 120.00050 * 94.72411 * 20 18 17 50 50 H 0.97000 * 119.99693 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4444 0.1238 7 6 4.4760 1.3191 -0.9284 8 6 5.6890 1.3776 -0.2982 9 6 7.0203 1.2949 -0.9280 10 8 7.1156 1.1546 -2.1320 11 7 8.1311 1.3747 -0.1690 12 6 9.4533 1.2920 -0.7945 13 1 9.4231 1.7719 -1.7726 14 6 9.8486 -0.1768 -0.9590 15 6 11.2297 -0.2632 -1.6117 16 6 12.2572 0.4455 -0.7269 17 6 11.8619 1.9143 -0.5623 18 6 10.4808 2.0006 0.0904 19 1 10.5105 1.5205 1.0685 20 7 10.1020 3.4071 0.2475 21 6 10.5201 4.1102 1.3457 22 1 11.1288 3.6278 2.0962 23 6 10.1616 5.4430 1.4943 24 7 9.4194 6.0307 0.5799 25 14 10.7314 6.4019 2.9927 26 1 12.2157 6.4232 3.0318 27 1 10.2177 7.7931 2.9148 28 1 10.2131 5.7516 4.2230 29 8 5.4221 1.5330 1.0124 30 7 4.2317 1.5669 1.2204 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 0.5490 2.1252 -1.3970 37 1 1.9981 3.1543 -1.3073 38 1 2.0699 1.5874 -2.1493 39 1 4.2787 1.2021 -1.9839 40 1 8.0552 1.4870 0.7915 41 1 9.1164 -0.6818 -1.5891 42 1 9.8788 -0.6568 0.0191 43 1 11.2000 0.2169 -2.5900 44 1 11.5112 -1.3096 -1.7294 45 1 13.2413 0.3835 -1.1918 46 1 12.2870 -0.0346 0.2512 47 1 11.8321 2.3943 -1.5405 48 1 12.5937 2.4190 0.0684 49 1 9.5584 3.8413 -0.4283 50 1 9.1692 6.9621 0.6836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085356019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:59 Heat of formation + Delta-G solvation = 5.685682 kcal Electronic energy + Delta-G solvation = -29539.423283 eV Core-core repulsion = 25569.049193 eV Total energy + Delta-G solvation = -3970.374090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.95313 -39.80625 -37.89559 -37.32070 -34.11308 -33.95239 -33.22489 -31.93627 -31.15811 -29.72665 -29.33990 -27.75045 -25.54043 -24.24031 -23.70195 -23.09305 -21.86712 -21.12921 -20.96393 -20.00002 -19.37446 -18.13070 -17.65152 -17.14183 -16.23081 -16.03311 -15.29654 -15.22946 -14.75292 -14.69009 -14.20265 -13.98089 -13.92904 -13.76056 -13.58431 -13.52701 -12.99668 -12.98129 -12.69148 -12.43464 -12.23127 -12.14047 -12.09175 -11.66073 -11.45084 -11.24066 -11.10611 -10.93100 -10.92535 -10.90135 -10.77296 -10.62334 -10.38049 -10.20360 -10.08634 -10.07477 -9.74775 -9.69026 -9.63359 -8.93616 -8.75261 -7.00763 -5.78645 -3.08781 0.90906 2.04623 2.73823 3.18693 3.40481 3.42898 3.47377 3.48365 3.87045 4.38342 4.54930 4.61998 4.76384 4.85602 4.98569 5.02350 5.05495 5.10670 5.17825 5.23770 5.26502 5.32776 5.43417 5.47796 5.51202 5.61360 5.65003 5.67666 5.72303 5.74083 5.76288 5.85363 5.90823 5.91577 5.93837 6.01326 6.05129 6.08524 6.26288 6.38741 6.43161 6.44190 6.54437 6.72688 6.84644 7.02172 7.61101 7.66779 8.11619 8.25528 8.38247 9.50171 10.05184 10.40195 11.43155 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.003287 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.895975 B = 8515.078960 C =10640.817011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.012 4.012 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.015 3.985 7 C -0.156 4.156 8 C -0.070 4.070 9 C 0.604 3.396 10 O -0.523 6.523 11 N -0.688 5.688 12 C 0.139 3.861 13 H 0.089 0.911 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.172 3.828 19 H 0.053 0.947 20 N -0.722 5.722 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.009 4.009 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 O 0.122 5.878 30 N -0.345 5.345 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.180 0.820 40 H 0.411 0.589 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 -14.700 -3.816 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.107 0.893 5 C -0.206 4.206 6 C -0.143 4.143 7 C -0.178 4.178 8 C -0.136 4.136 9 C 0.387 3.613 10 O -0.400 6.400 11 N -0.337 5.337 12 C 0.035 3.965 13 H 0.107 0.893 14 C -0.164 4.164 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.174 4.174 18 C 0.062 3.938 19 H 0.071 0.929 20 N -0.362 5.362 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.212 1.212 29 O 0.049 5.951 30 N -0.045 5.045 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.197 0.803 40 H 0.246 0.754 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.297 -14.535 -3.209 18.687 hybrid contribution 0.172 0.889 0.291 0.951 sum -11.124 -13.646 -2.919 17.846 Atomic orbital electron populations 1.21818 0.95089 1.01903 1.02158 1.21561 0.96215 0.94894 1.02706 1.19584 0.85499 0.97760 1.00281 0.89253 1.21904 1.01851 1.00900 0.95918 1.23559 0.98715 1.03535 0.88514 1.22726 0.89484 1.03739 1.01882 1.24357 0.97461 1.07462 0.84336 1.16509 0.81220 0.77599 0.86000 1.90838 1.85526 1.50747 1.12900 1.45849 1.05275 1.70771 1.11756 1.21460 0.80976 0.95665 0.98425 0.89318 1.21887 0.97206 0.96182 1.01143 1.21469 0.94359 1.00019 0.99292 1.21591 0.97904 0.96902 0.99438 1.22223 0.99311 0.94335 1.01508 1.20480 0.90715 0.86901 0.95725 0.92892 1.42410 1.62299 1.05614 1.25919 1.19139 1.26579 0.92811 0.98807 0.91191 1.24736 1.00444 0.97045 0.98356 1.69655 1.41012 1.12069 1.34927 0.86307 0.78144 0.79290 0.82643 1.21310 1.21781 1.21235 1.85016 1.19281 1.66024 1.24826 1.73726 0.89374 1.17133 1.24284 0.92493 0.92563 0.92163 0.91371 0.91719 0.91303 0.92010 0.91896 0.80300 0.75353 0.91793 0.91765 0.91881 0.92265 0.92614 0.92315 0.92380 0.91460 0.78142 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.95 5.38 -26.73 -0.14 -1.10 16 3 C -0.01 -0.12 2.85 -91.77 -0.26 -0.38 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.21 8.56 37.16 0.32 -0.89 16 6 C 0.01 0.19 6.20 -82.17 -0.51 -0.32 16 7 C -0.16 -2.09 10.12 -38.94 -0.39 -2.49 16 8 C -0.07 -1.08 7.29 -36.32 -0.26 -1.34 16 9 C 0.60 10.13 7.78 -12.48 -0.10 10.03 16 10 O -0.52 -9.79 16.58 5.28 0.09 -9.70 16 11 N -0.69 -11.19 4.90 -54.86 -0.27 -11.46 16 12 C 0.14 2.27 1.98 -67.93 -0.13 2.13 16 13 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 14 C -0.13 -1.68 5.49 -26.73 -0.15 -1.82 16 15 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 16 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 17 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 18 C 0.17 3.15 2.29 -67.92 -0.16 2.99 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 N -0.72 -16.96 4.95 -53.42 -0.26 -17.23 16 21 C -0.24 -6.39 9.93 -15.06 -0.15 -6.53 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 25 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 O 0.12 1.93 11.04 15.54 0.17 2.10 16 30 N -0.35 -5.32 12.04 33.52 0.40 -4.92 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 6.56 -51.93 -0.34 0.00 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 7.48 -51.93 -0.39 0.09 16 39 H 0.18 2.05 7.65 -52.48 -0.40 1.65 16 40 H 0.41 6.55 8.43 -40.82 -0.34 6.21 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -30.38 404.13 -8.63 -39.01 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -8.41 Total: 12.29 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.14 Total: -6.33 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.59 Total: -60.49 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.26 Total: -7.60 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.38 -8.63 -39.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085356019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.696 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds