Wall clock time and date at job start Tue Mar 31 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47246 * 2 1 4 4 H 1.08996 * 109.47310 * 54.99314 * 3 2 1 5 5 C 1.53007 * 109.46820 * 295.00138 * 3 2 1 6 6 C 1.50694 * 109.47633 * 174.99920 * 3 2 1 7 7 C 1.41268 * 126.70590 * 85.25957 * 6 3 2 8 8 C 1.36820 * 103.84782 * 180.10421 * 7 6 3 9 9 C 1.47507 * 126.94672 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99835 * 359.70501 * 9 8 7 11 11 N 1.34774 * 120.00473 * 179.70336 * 9 8 7 12 12 C 1.46501 * 119.99987 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.47152 * 35.00375 * 12 11 9 14 14 C 1.52996 * 109.47264 * 274.99912 * 12 11 9 15 15 C 1.52998 * 109.47048 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47292 * 60.00174 * 15 14 12 17 17 C 1.52996 * 109.47270 * 300.00068 * 16 15 14 18 18 C 1.52998 * 109.47019 * 59.99765 * 17 16 15 19 19 H 1.09000 * 109.47516 * 59.99967 * 18 17 16 20 20 N 1.46506 * 109.47262 * 180.02562 * 18 17 16 21 21 C 1.36938 * 119.99589 * 275.00203 * 20 18 17 22 22 H 1.07999 * 120.00325 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99408 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00325 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99550 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47349 * 59.99998 * 25 23 21 27 27 H 1.48505 * 109.47077 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47093 * 299.99919 * 25 23 21 29 29 O 1.34647 * 106.11171 * 359.66074 * 8 7 6 30 30 N 1.20884 * 111.46681 * 0.23094 * 29 8 7 31 31 H 1.09002 * 109.46937 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46896 * 300.00099 * 1 2 3 33 33 H 1.08996 * 109.46891 * 60.00442 * 1 2 3 34 34 H 1.08997 * 109.47638 * 239.99937 * 2 1 3 35 35 H 1.09004 * 109.47008 * 119.99305 * 2 1 3 36 36 H 1.08991 * 109.47248 * 59.99851 * 5 3 2 37 37 H 1.09002 * 109.47335 * 179.97438 * 5 3 2 38 38 H 1.09006 * 109.46967 * 299.99474 * 5 3 2 39 39 H 1.08007 * 128.07466 * 359.97438 * 7 6 3 40 40 H 0.96997 * 119.99964 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.46909 * 60.00421 * 14 12 11 42 42 H 1.08994 * 109.47414 * 300.00303 * 14 12 11 43 43 H 1.09007 * 109.47327 * 300.00144 * 15 14 12 44 44 H 1.09002 * 109.47121 * 180.02562 * 15 14 12 45 45 H 1.09007 * 109.47213 * 179.97438 * 16 15 14 46 46 H 1.09002 * 109.47283 * 60.00068 * 16 15 14 47 47 H 1.09002 * 109.46968 * 300.00193 * 17 16 15 48 48 H 1.09001 * 109.47247 * 179.97438 * 17 16 15 49 49 H 0.96995 * 120.00050 * 94.72411 * 20 18 17 50 50 H 0.97000 * 119.99693 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4444 0.1238 7 6 4.4760 1.3191 -0.9284 8 6 5.6890 1.3776 -0.2982 9 6 7.0203 1.2949 -0.9280 10 8 7.1156 1.1546 -2.1320 11 7 8.1311 1.3747 -0.1690 12 6 9.4533 1.2920 -0.7945 13 1 9.4231 1.7719 -1.7726 14 6 9.8486 -0.1768 -0.9590 15 6 11.2297 -0.2632 -1.6117 16 6 12.2572 0.4455 -0.7269 17 6 11.8619 1.9143 -0.5623 18 6 10.4808 2.0006 0.0904 19 1 10.5105 1.5205 1.0685 20 7 10.1020 3.4071 0.2475 21 6 10.5201 4.1102 1.3457 22 1 11.1288 3.6278 2.0962 23 6 10.1616 5.4430 1.4943 24 7 9.4194 6.0307 0.5799 25 14 10.7314 6.4019 2.9927 26 1 12.2157 6.4232 3.0318 27 1 10.2177 7.7931 2.9148 28 1 10.2131 5.7516 4.2230 29 8 5.4221 1.5330 1.0124 30 7 4.2317 1.5669 1.2204 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 0.5490 2.1252 -1.3970 37 1 1.9981 3.1543 -1.3073 38 1 2.0699 1.5874 -2.1493 39 1 4.2787 1.2021 -1.9839 40 1 8.0552 1.4870 0.7915 41 1 9.1164 -0.6818 -1.5891 42 1 9.8788 -0.6568 0.0191 43 1 11.2000 0.2169 -2.5900 44 1 11.5112 -1.3096 -1.7294 45 1 13.2413 0.3835 -1.1918 46 1 12.2870 -0.0346 0.2512 47 1 11.8321 2.3943 -1.5405 48 1 12.5937 2.4190 0.0684 49 1 9.5584 3.8413 -0.4283 50 1 9.1692 6.9621 0.6836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085356019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:58 Heat of formation + Delta-G solvation = -12.394837 kcal Electronic energy + Delta-G solvation = -29540.207313 eV Core-core repulsion = 25569.049193 eV Total energy + Delta-G solvation = -3971.158120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.09574 -41.16336 -39.25655 -38.13218 -35.81632 -35.33293 -34.22573 -33.14271 -32.95363 -30.60888 -30.39633 -29.34850 -26.29874 -25.77721 -25.28735 -24.06246 -23.10592 -22.49393 -21.95889 -21.22077 -20.52606 -19.44879 -18.96759 -18.81605 -17.54221 -17.28431 -16.79173 -16.11089 -16.03532 -15.93074 -15.55854 -15.35516 -15.08280 -14.82809 -14.77061 -14.60714 -14.57984 -14.08161 -13.68545 -13.64017 -13.54400 -13.02674 -12.92344 -12.89124 -12.78548 -12.52092 -12.27722 -12.19987 -12.18216 -12.06094 -12.02520 -11.97351 -11.71240 -11.58646 -11.45259 -11.41166 -11.09596 -11.06293 -10.86712 -10.83606 -10.09646 -8.99411 -7.91403 -5.19831 -0.31157 0.97116 1.47884 1.49643 1.50599 1.55432 1.88486 2.16054 2.56884 2.91020 3.34391 3.42898 3.67030 3.78283 3.86128 3.87319 3.97639 4.05261 4.13803 4.15055 4.26931 4.31527 4.42356 4.44979 4.49413 4.54811 4.60600 4.61096 4.70597 4.73418 4.84569 4.96052 5.00808 5.01430 5.07594 5.10746 5.11923 5.17390 5.26293 5.30259 5.32297 5.37037 5.43482 5.48173 5.52180 5.54752 5.66192 6.26752 6.29002 6.86103 7.00456 7.35666 8.09494 8.32794 9.31389 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.003287 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.895975 B = 8515.078960 C =10640.817011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.013 4.013 4 H 0.088 0.912 5 C -0.146 4.146 6 C 0.025 3.975 7 C -0.145 4.145 8 C -0.089 4.089 9 C 0.605 3.395 10 O -0.546 6.546 11 N -0.688 5.688 12 C 0.146 3.854 13 H 0.065 0.935 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.111 4.111 17 C -0.127 4.127 18 C 0.170 3.830 19 H 0.059 0.941 20 N -0.732 5.732 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.966 3.034 26 H -0.279 1.279 27 H -0.302 1.302 28 H -0.278 1.278 29 O 0.103 5.897 30 N -0.367 5.367 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.200 0.800 40 H 0.412 0.588 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.049 0.951 49 H 0.369 0.631 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 -16.772 -3.812 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.033 4.033 4 H 0.106 0.894 5 C -0.204 4.204 6 C -0.133 4.133 7 C -0.167 4.167 8 C -0.154 4.154 9 C 0.389 3.611 10 O -0.425 6.425 11 N -0.335 5.335 12 C 0.042 3.958 13 H 0.083 0.917 14 C -0.156 4.156 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.168 4.168 18 C 0.062 3.938 19 H 0.077 0.923 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.097 0.903 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.796 3.204 26 H -0.205 1.205 27 H -0.229 1.229 28 H -0.204 1.204 29 O 0.033 5.967 30 N -0.071 5.071 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.217 0.783 40 H 0.247 0.753 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.200 0.800 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.574 -16.668 -3.185 20.541 hybrid contribution 0.245 1.467 0.268 1.511 sum -11.329 -15.202 -2.917 19.182 Atomic orbital electron populations 1.21804 0.93433 1.02651 1.02747 1.21537 0.97574 0.93504 1.02367 1.19800 0.83113 0.99100 1.01245 0.89375 1.21923 1.03373 1.00013 0.95063 1.24149 1.00238 1.01377 0.87575 1.23068 0.88725 1.02031 1.02860 1.24262 0.97438 1.09031 0.84707 1.16617 0.81700 0.77053 0.85738 1.90813 1.85992 1.51999 1.13716 1.45877 1.05386 1.70520 1.11758 1.21373 0.80446 0.97449 0.96556 0.91662 1.21841 0.98022 0.93517 1.02174 1.21476 0.93070 1.01642 0.98556 1.21529 0.98973 0.93799 1.00597 1.22081 0.97462 0.97206 1.00029 1.20710 0.92189 0.84275 0.96672 0.92297 1.42578 1.62131 1.07584 1.24821 1.19529 1.24710 0.92867 0.99084 0.90282 1.25475 1.01693 0.98377 1.01116 1.69823 1.43363 1.11772 1.37033 0.85315 0.77876 0.77331 0.79860 1.20492 1.22901 1.20429 1.84992 1.19715 1.67005 1.24986 1.73720 0.89397 1.18461 1.25483 0.91707 0.92550 0.91005 0.90852 0.92961 0.89065 0.93138 0.91165 0.78299 0.75265 0.91798 0.90263 0.92416 0.89312 0.90793 0.91063 0.93745 0.93170 0.79969 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.67 71.98 0.70 -0.89 16 2 C -0.11 -1.65 5.38 30.59 0.16 -1.49 16 3 C -0.01 -0.24 2.85 -11.54 -0.03 -0.27 16 4 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 5 C -0.15 -2.10 8.56 71.98 0.62 -1.48 16 6 C 0.02 0.64 6.20 43.55 0.27 0.91 16 7 C -0.14 -3.82 10.12 22.68 0.23 -3.59 16 8 C -0.09 -2.78 7.29 24.38 0.18 -2.60 16 9 C 0.61 20.69 7.78 86.69 0.67 21.36 16 10 O -0.55 -20.71 16.58 -4.01 -0.07 -20.78 16 11 N -0.69 -22.74 4.90 -445.73 -2.19 -24.93 16 12 C 0.15 4.76 1.98 44.99 0.09 4.85 16 13 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 14 C -0.12 -2.92 5.49 30.59 0.17 -2.75 16 15 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 16 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 17 C -0.13 -4.16 5.50 30.59 0.17 -3.99 16 18 C 0.17 6.19 2.29 44.99 0.10 6.29 16 19 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 20 N -0.73 -35.14 4.95 -322.92 -1.60 -36.74 16 21 C -0.23 -12.22 9.93 84.03 0.83 -11.38 16 22 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 24 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 25 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 O 0.10 3.35 11.04 65.78 0.73 4.08 16 30 N -0.37 -11.45 12.04 -48.86 -0.59 -12.04 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.61 6.56 -2.39 -0.02 0.59 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 36 H 0.09 0.91 6.56 -2.39 -0.02 0.90 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.91 7.48 -2.38 -0.02 0.89 16 39 H 0.20 4.30 7.65 -2.91 -0.02 4.28 16 40 H 0.41 13.43 8.43 -92.71 -0.78 12.65 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.37 19.92 7.80 -92.71 -0.72 19.19 16 50 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -66.94 404.13 3.03 -63.92 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -0.56 Total: 40.99 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.99 Total: -3.39 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -4.09 Total: -132.81 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.66 Total: -16.70 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -66.94 3.03 -63.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085356019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.521 kcal (2) G-P(sol) polarization free energy of solvation -66.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds