Wall clock time and date at job start Tue Mar 31 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00049 * 3 2 1 5 5 C 1.52995 * 109.47234 * 295.00428 * 3 2 1 6 6 C 1.50703 * 109.47148 * 175.00085 * 3 2 1 7 7 C 1.41257 * 126.70115 * 84.71413 * 6 3 2 8 8 C 1.36824 * 103.84250 * 179.85662 * 7 6 3 9 9 C 1.47517 * 126.94355 * 180.12401 * 8 7 6 10 10 O 1.21578 * 119.99889 * 0.30754 * 9 8 7 11 11 N 1.34778 * 119.99711 * 180.29925 * 9 8 7 12 12 C 1.46504 * 119.99481 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46827 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.01648 * 305.07001 * 13 12 11 15 15 C 1.53884 * 110.02995 * 66.45807 * 13 12 11 16 16 C 1.54265 * 106.59557 * 119.28406 * 15 13 12 17 17 C 1.54887 * 104.20001 * 23.60951 * 16 15 13 18 18 H 1.08999 * 110.75855 * 80.37169 * 17 16 15 19 19 N 1.46499 * 110.75692 * 203.56032 * 17 16 15 20 20 C 1.36938 * 119.99768 * 273.54043 * 19 17 16 21 21 H 1.07996 * 119.99838 * 0.02562 * 20 19 17 22 22 C 1.38815 * 120.00051 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99700 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00171 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46970 * 90.00191 * 24 22 20 26 26 H 1.48495 * 109.47420 * 210.00594 * 24 22 20 27 27 H 1.48500 * 109.47348 * 330.00588 * 24 22 20 28 28 C 1.54266 * 110.03182 * 183.62318 * 13 12 11 29 29 O 1.34641 * 106.11289 * 0.39860 * 8 7 6 30 30 N 1.20885 * 111.47071 * 359.72994 * 29 8 7 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 34 34 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 35 35 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 36 36 H 1.09006 * 109.47389 * 299.99793 * 5 3 2 37 37 H 1.09003 * 109.47743 * 59.99455 * 5 3 2 38 38 H 1.09002 * 109.47112 * 179.97438 * 5 3 2 39 39 H 1.08006 * 128.08062 * 359.97438 * 7 6 3 40 40 H 0.97001 * 120.00473 * 0.02562 * 11 9 8 41 41 H 1.08995 * 109.47714 * 300.00606 * 12 11 9 42 42 H 1.09000 * 109.46856 * 60.01120 * 12 11 9 43 43 H 1.08998 * 110.02923 * 238.56888 * 15 13 12 44 44 H 1.09001 * 110.02815 * 0.02562 * 15 13 12 45 45 H 1.08998 * 110.48328 * 142.28957 * 16 15 13 46 46 H 1.09002 * 110.48637 * 264.79756 * 16 15 13 47 47 H 0.97002 * 120.00435 * 93.54853 * 19 17 16 48 48 H 0.97002 * 119.99429 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.48675 * 335.78651 * 28 13 12 50 50 H 1.09004 * 110.48665 * 98.43018 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4444 0.1238 7 6 4.4758 1.3083 -0.9272 8 6 5.6889 1.3775 -0.2983 9 6 7.0203 1.2932 -0.9280 10 8 7.1154 1.1522 -2.1319 11 7 8.1311 1.3726 -0.1689 12 6 9.4532 1.2883 -0.7943 13 6 10.5347 1.4043 0.2818 14 1 10.3894 2.3168 0.8599 15 6 10.4874 0.1785 1.2109 16 6 11.8578 -0.5194 1.0895 17 6 12.8144 0.6018 0.6133 18 1 13.1267 1.2249 1.4513 19 7 13.9787 0.0347 -0.0716 20 6 15.0755 -0.3539 0.6503 21 1 15.0820 -0.2428 1.7245 22 6 16.1786 -0.8917 0.0014 23 7 16.1703 -1.0276 -1.3078 24 14 17.6744 -1.4225 0.9861 25 1 17.5259 -2.8456 1.3836 26 1 18.8952 -1.2653 0.1554 27 1 17.7914 -0.5786 2.2024 28 6 11.9321 1.4083 -0.3717 29 8 5.4220 1.5318 1.0124 30 7 4.2317 1.5659 1.2205 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0698 1.5877 -2.1492 37 1 0.5488 2.1253 -1.3969 38 1 1.9981 3.1544 -1.3070 39 1 4.2784 1.1815 -1.9815 40 1 8.0551 1.4847 0.7917 41 1 9.5524 0.3316 -1.3070 42 1 9.5673 2.0994 -1.5134 43 1 10.3201 0.4963 2.2400 44 1 9.6943 -0.4991 0.8948 45 1 12.1757 -0.9066 2.0575 46 1 11.8128 -1.3231 0.3544 47 1 13.9727 -0.0654 -1.0364 48 1 16.9413 -1.4031 -1.7612 49 1 11.8997 0.9176 -1.3444 50 1 12.3043 2.4281 -0.4700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086822868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:31 Heat of formation + Delta-G solvation = 7.261253 kcal Electronic energy + Delta-G solvation = -27969.208107 eV Core-core repulsion = 23998.902339 eV Total energy + Delta-G solvation = -3970.305768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.38668 -39.99890 -38.18721 -37.62158 -35.15193 -33.66425 -33.44461 -32.34529 -30.72721 -29.99279 -29.08601 -27.40431 -25.83761 -25.16955 -23.55209 -23.29505 -23.00865 -21.46234 -20.40839 -19.66715 -19.44153 -18.52061 -18.10230 -17.10745 -16.61477 -16.34389 -15.83821 -15.50480 -15.29992 -14.93315 -14.85087 -14.28864 -14.25871 -13.89806 -13.82402 -13.39093 -13.26619 -12.92299 -12.84283 -12.66920 -12.38690 -12.24419 -12.01494 -11.86711 -11.73616 -11.51525 -11.18320 -11.14905 -10.93568 -10.79916 -10.69127 -10.58056 -10.50633 -10.45455 -10.30186 -10.15682 -10.09092 -9.84385 -9.66095 -9.34264 -8.87239 -6.94066 -5.76373 -3.04919 0.46164 1.65193 2.27312 2.69965 2.92744 3.43734 3.48947 3.50571 3.51018 4.02572 4.35684 4.45479 4.52766 4.58538 4.62527 4.70977 4.76533 4.88214 4.92485 4.98725 5.00102 5.02696 5.14354 5.34896 5.42578 5.45392 5.47660 5.49426 5.51258 5.59034 5.63738 5.66068 5.76266 5.81534 5.85587 5.91827 5.94316 6.01992 6.12698 6.26708 6.30903 6.44260 6.55620 6.69752 6.86327 7.04675 7.11341 7.64566 7.71109 7.76662 8.42664 9.53556 10.12310 10.46290 11.46290 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.001628 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.326490 B =17199.611419 C =17408.839382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.018 3.982 7 C -0.148 4.148 8 C -0.081 4.081 9 C 0.602 3.398 10 O -0.512 6.512 11 N -0.709 5.709 12 C 0.124 3.876 13 C -0.101 4.101 14 H 0.076 0.924 15 C -0.122 4.122 16 C -0.143 4.143 17 C 0.177 3.823 18 H 0.053 0.947 19 N -0.721 5.721 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.121 4.121 29 O 0.117 5.883 30 N -0.344 5.344 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.182 0.818 40 H 0.408 0.592 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.070 0.930 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.556 6.653 2.332 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.033 4.033 4 H 0.109 0.891 5 C -0.206 4.206 6 C -0.139 4.139 7 C -0.171 4.171 8 C -0.147 4.147 9 C 0.384 3.616 10 O -0.388 6.388 11 N -0.359 5.359 12 C 0.002 3.998 13 C -0.121 4.121 14 H 0.095 0.905 15 C -0.160 4.160 16 C -0.184 4.184 17 C 0.066 3.934 18 H 0.071 0.929 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.160 4.160 29 O 0.044 5.956 30 N -0.044 5.044 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.199 0.801 40 H 0.243 0.757 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -31.616 6.678 2.853 32.439 hybrid contribution 0.836 -0.487 -0.082 0.971 sum -30.780 6.191 2.771 31.519 Atomic orbital electron populations 1.21818 0.94893 1.02127 1.02162 1.21575 0.96430 0.94650 1.02845 1.19630 0.85215 0.98039 1.00377 0.89146 1.21908 1.02162 1.00662 0.95867 1.23631 0.98934 1.03048 0.88328 1.22808 0.89435 1.02633 1.02175 1.24307 0.97357 1.08606 0.84422 1.16527 0.81146 0.77836 0.86053 1.90896 1.85446 1.49468 1.12947 1.45992 1.05970 1.72433 1.11552 1.21738 0.79230 1.03002 0.95844 1.21981 0.94760 0.99303 0.96018 0.90540 1.22235 0.99029 0.96280 0.98491 1.23071 0.93961 1.00056 1.01332 1.21154 0.86883 0.91819 0.93530 0.92913 1.42376 1.13098 1.73934 1.06684 1.19249 0.92930 1.33640 0.91229 0.91195 1.24744 0.98498 1.02104 0.95631 1.69665 1.30706 1.51046 1.06700 0.86202 0.82765 0.78444 0.78852 1.21767 1.21794 1.20780 1.22567 0.92630 1.00948 0.99845 1.84984 1.19514 1.66415 1.24696 1.73737 0.89226 1.17277 1.24116 0.92133 0.92323 0.92532 0.91274 0.91646 0.91824 0.91091 0.92139 0.80052 0.75707 0.90453 0.90816 0.92235 0.92350 0.92574 0.91798 0.78195 0.93522 0.91104 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.67 37.16 0.36 -0.29 16 2 C -0.12 -0.66 5.38 -26.73 -0.14 -0.80 16 3 C -0.01 -0.08 2.85 -91.77 -0.26 -0.34 16 4 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -0.70 8.57 37.15 0.32 -0.38 16 6 C 0.02 0.16 6.20 -82.17 -0.51 -0.35 16 7 C -0.15 -1.33 10.13 -38.95 -0.39 -1.73 16 8 C -0.08 -0.82 7.29 -36.31 -0.26 -1.08 16 9 C 0.60 6.89 7.82 -12.48 -0.10 6.79 16 10 O -0.51 -7.46 16.91 5.30 0.09 -7.37 16 11 N -0.71 -7.02 5.29 -61.35 -0.32 -7.35 16 12 C 0.12 1.40 4.70 -4.04 -0.02 1.38 16 13 C -0.10 -1.18 2.98 -89.50 -0.27 -1.45 16 14 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.12 -1.52 6.13 -25.61 -0.16 -1.68 16 16 C -0.14 -2.43 6.51 -25.07 -0.16 -2.59 16 17 C 0.18 3.35 3.53 -65.94 -0.23 3.12 16 18 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 19 N -0.72 -17.75 5.26 -51.50 -0.27 -18.02 16 20 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C -0.12 -1.83 5.97 -25.07 -0.15 -1.98 16 29 O 0.12 1.18 11.04 15.55 0.17 1.35 16 30 N -0.34 -3.61 12.04 33.52 0.40 -3.20 16 31 H 0.06 0.21 6.57 -51.93 -0.34 -0.13 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.28 7.49 -51.93 -0.39 -0.11 16 37 H 0.07 0.25 6.57 -51.93 -0.34 -0.10 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.18 1.35 7.66 -52.48 -0.40 0.95 16 40 H 0.41 3.23 8.13 -40.82 -0.33 2.90 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.69 7.58 -51.93 -0.39 0.30 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.38 10.07 7.73 -40.82 -0.32 9.75 16 48 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.07 1.12 7.74 -51.93 -0.40 0.72 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -31.84 407.26 -8.70 -40.54 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.38 Total: 6.57 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.23 Total: -8.59 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.53 Total: -55.92 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: 0.26 Total: -6.02 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.84 -8.70 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086822868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.804 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds