Wall clock time and date at job start Tue Mar 31 2020 18:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00049 * 3 2 1 5 5 C 1.52995 * 109.47234 * 295.00428 * 3 2 1 6 6 C 1.50703 * 109.47148 * 175.00085 * 3 2 1 7 7 C 1.41257 * 126.70115 * 84.71413 * 6 3 2 8 8 C 1.36824 * 103.84250 * 179.85662 * 7 6 3 9 9 C 1.47517 * 126.94355 * 180.12401 * 8 7 6 10 10 O 1.21578 * 119.99889 * 0.30754 * 9 8 7 11 11 N 1.34778 * 119.99711 * 180.29925 * 9 8 7 12 12 C 1.46504 * 119.99481 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46827 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.01648 * 305.07001 * 13 12 11 15 15 C 1.53884 * 110.02995 * 66.45807 * 13 12 11 16 16 C 1.54265 * 106.59557 * 119.28406 * 15 13 12 17 17 C 1.54887 * 104.20001 * 23.60951 * 16 15 13 18 18 H 1.08999 * 110.75855 * 80.37169 * 17 16 15 19 19 N 1.46499 * 110.75692 * 203.56032 * 17 16 15 20 20 C 1.36938 * 119.99768 * 273.54043 * 19 17 16 21 21 H 1.07996 * 119.99838 * 0.02562 * 20 19 17 22 22 C 1.38815 * 120.00051 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99700 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00171 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46970 * 90.00191 * 24 22 20 26 26 H 1.48495 * 109.47420 * 210.00594 * 24 22 20 27 27 H 1.48500 * 109.47348 * 330.00588 * 24 22 20 28 28 C 1.54266 * 110.03182 * 183.62318 * 13 12 11 29 29 O 1.34641 * 106.11289 * 0.39860 * 8 7 6 30 30 N 1.20885 * 111.47071 * 359.72994 * 29 8 7 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 34 34 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 35 35 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 36 36 H 1.09006 * 109.47389 * 299.99793 * 5 3 2 37 37 H 1.09003 * 109.47743 * 59.99455 * 5 3 2 38 38 H 1.09002 * 109.47112 * 179.97438 * 5 3 2 39 39 H 1.08006 * 128.08062 * 359.97438 * 7 6 3 40 40 H 0.97001 * 120.00473 * 0.02562 * 11 9 8 41 41 H 1.08995 * 109.47714 * 300.00606 * 12 11 9 42 42 H 1.09000 * 109.46856 * 60.01120 * 12 11 9 43 43 H 1.08998 * 110.02923 * 238.56888 * 15 13 12 44 44 H 1.09001 * 110.02815 * 0.02562 * 15 13 12 45 45 H 1.08998 * 110.48328 * 142.28957 * 16 15 13 46 46 H 1.09002 * 110.48637 * 264.79756 * 16 15 13 47 47 H 0.97002 * 120.00435 * 93.54853 * 19 17 16 48 48 H 0.97002 * 119.99429 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.48675 * 335.78651 * 28 13 12 50 50 H 1.09004 * 110.48665 * 98.43018 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4444 0.1238 7 6 4.4758 1.3083 -0.9272 8 6 5.6889 1.3775 -0.2983 9 6 7.0203 1.2932 -0.9280 10 8 7.1154 1.1522 -2.1319 11 7 8.1311 1.3726 -0.1689 12 6 9.4532 1.2883 -0.7943 13 6 10.5347 1.4043 0.2818 14 1 10.3894 2.3168 0.8599 15 6 10.4874 0.1785 1.2109 16 6 11.8578 -0.5194 1.0895 17 6 12.8144 0.6018 0.6133 18 1 13.1267 1.2249 1.4513 19 7 13.9787 0.0347 -0.0716 20 6 15.0755 -0.3539 0.6503 21 1 15.0820 -0.2428 1.7245 22 6 16.1786 -0.8917 0.0014 23 7 16.1703 -1.0276 -1.3078 24 14 17.6744 -1.4225 0.9861 25 1 17.5259 -2.8456 1.3836 26 1 18.8952 -1.2653 0.1554 27 1 17.7914 -0.5786 2.2024 28 6 11.9321 1.4083 -0.3717 29 8 5.4220 1.5318 1.0124 30 7 4.2317 1.5659 1.2205 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0698 1.5877 -2.1492 37 1 0.5488 2.1253 -1.3969 38 1 1.9981 3.1544 -1.3070 39 1 4.2784 1.1815 -1.9815 40 1 8.0551 1.4847 0.7917 41 1 9.5524 0.3316 -1.3070 42 1 9.5673 2.0994 -1.5134 43 1 10.3201 0.4963 2.2400 44 1 9.6943 -0.4991 0.8948 45 1 12.1757 -0.9066 2.0575 46 1 11.8128 -1.3231 0.3544 47 1 13.9727 -0.0654 -1.0364 48 1 16.9413 -1.4031 -1.7612 49 1 11.8997 0.9176 -1.3444 50 1 12.3043 2.4281 -0.4700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086822868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:30 Heat of formation + Delta-G solvation = -12.205245 kcal Electronic energy + Delta-G solvation = -27970.052237 eV Core-core repulsion = 23998.902339 eV Total energy + Delta-G solvation = -3971.149899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.12538 -40.95304 -39.42636 -38.13354 -36.43501 -35.10468 -34.24399 -33.24473 -32.44378 -30.39918 -30.30878 -28.84281 -26.44094 -26.26788 -25.04309 -24.22656 -23.96723 -22.11201 -21.42306 -20.83335 -20.52598 -19.38705 -19.03383 -18.85819 -17.45554 -17.26385 -16.86122 -16.74048 -16.05110 -15.94428 -15.90358 -15.50926 -15.19853 -14.94638 -14.77101 -14.53242 -14.30473 -14.08564 -13.68403 -13.59371 -13.34846 -13.02750 -12.94023 -12.91389 -12.68834 -12.52973 -12.33480 -12.19554 -12.12592 -11.99035 -11.95868 -11.79080 -11.67989 -11.59719 -11.57034 -11.40411 -11.21939 -11.08589 -10.88062 -10.86966 -10.23581 -8.95978 -7.92811 -5.20491 -0.32600 0.95530 1.45365 1.47846 1.49198 1.57545 1.83563 2.11792 2.57747 2.90046 3.34749 3.39892 3.66316 3.75851 3.81349 3.86770 3.86953 3.97184 4.05698 4.14104 4.32379 4.38851 4.44915 4.49665 4.54892 4.60741 4.64849 4.66533 4.73294 4.79715 4.81724 4.83331 4.88968 5.01897 5.07130 5.11071 5.12036 5.12918 5.17221 5.18254 5.24601 5.37251 5.46357 5.47800 5.51821 5.56173 5.66626 6.21729 6.30395 6.84624 6.99777 7.35709 8.14969 8.36123 9.30877 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.001628 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.326490 B =17199.611419 C =17408.839382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.013 4.013 4 H 0.091 0.909 5 C -0.146 4.146 6 C 0.022 3.978 7 C -0.144 4.144 8 C -0.089 4.089 9 C 0.606 3.394 10 O -0.547 6.547 11 N -0.696 5.696 12 C 0.131 3.869 13 C -0.085 4.085 14 H 0.105 0.895 15 C -0.111 4.111 16 C -0.139 4.139 17 C 0.163 3.837 18 H 0.052 0.948 19 N -0.736 5.736 20 C -0.238 4.238 21 H 0.075 0.925 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.971 3.029 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.268 1.268 28 C -0.114 4.114 29 O 0.115 5.885 30 N -0.363 5.363 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.196 0.804 40 H 0.420 0.580 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.039 0.961 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.058 0.942 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.635 7.533 3.555 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.033 4.033 4 H 0.109 0.891 5 C -0.204 4.204 6 C -0.136 4.136 7 C -0.166 4.166 8 C -0.155 4.155 9 C 0.390 3.610 10 O -0.426 6.426 11 N -0.347 5.347 12 C 0.008 3.992 13 C -0.104 4.104 14 H 0.123 0.877 15 C -0.149 4.149 16 C -0.180 4.180 17 C 0.054 3.946 18 H 0.070 0.930 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.093 0.907 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.800 3.200 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.193 1.193 28 C -0.153 4.153 29 O 0.043 5.957 30 N -0.064 5.064 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.213 0.787 40 H 0.258 0.742 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.203 0.797 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -33.731 7.582 4.152 34.821 hybrid contribution 1.398 -0.743 -0.425 1.640 sum -32.332 6.839 3.727 33.257 Atomic orbital electron populations 1.21806 0.93659 1.02496 1.02782 1.21552 0.97466 0.94030 1.02219 1.19767 0.83547 0.98616 1.01324 0.89079 1.21917 1.03246 1.00240 0.94978 1.24051 1.00073 1.01763 0.87678 1.23072 0.89100 1.01542 1.02900 1.24114 0.97027 1.09652 0.84754 1.16590 0.81700 0.77138 0.85615 1.90881 1.86006 1.51236 1.14429 1.45833 1.05150 1.71613 1.12102 1.21554 0.79648 1.02352 0.95660 1.21848 0.92565 1.00225 0.95775 0.87690 1.22171 0.96228 0.96203 1.00264 1.22900 0.96219 0.98928 0.99914 1.21474 0.86065 0.92819 0.94228 0.93006 1.42599 1.14286 1.74382 1.06222 1.19646 0.93622 1.32039 0.91678 0.90667 1.25541 1.01531 1.03338 0.96604 1.69824 1.31258 1.52844 1.08277 0.85173 0.79072 0.77991 0.77755 1.21665 1.22330 1.19332 1.22458 0.93975 1.00365 0.98515 1.84967 1.19488 1.66729 1.24501 1.73725 0.89491 1.18253 1.24959 0.91054 0.92117 0.92370 0.91193 0.92997 0.91460 0.89500 0.92462 0.78720 0.74239 0.91948 0.90670 0.89713 0.91382 0.93379 0.94177 0.79654 0.94163 0.92317 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 71.98 0.70 -0.29 16 2 C -0.11 -1.12 5.38 30.60 0.16 -0.96 16 3 C -0.01 -0.14 2.85 -11.54 -0.03 -0.18 16 4 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 5 C -0.15 -1.08 8.57 71.98 0.62 -0.46 16 6 C 0.02 0.36 6.20 43.55 0.27 0.63 16 7 C -0.14 -2.40 10.13 22.68 0.23 -2.17 16 8 C -0.09 -1.70 7.29 24.39 0.18 -1.52 16 9 C 0.61 13.12 7.82 86.69 0.68 13.80 16 10 O -0.55 -15.59 16.91 -3.96 -0.07 -15.66 16 11 N -0.70 -12.37 5.29 -466.29 -2.47 -14.83 16 12 C 0.13 2.71 4.70 86.38 0.41 3.12 16 13 C -0.08 -1.77 2.98 -10.07 -0.03 -1.80 16 14 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.11 -2.48 6.13 31.32 0.19 -2.29 16 16 C -0.14 -4.62 6.51 31.67 0.21 -4.42 16 17 C 0.16 6.11 3.53 46.28 0.16 6.28 16 18 H 0.05 1.96 8.12 -2.39 -0.02 1.94 16 19 N -0.74 -36.89 5.26 -316.85 -1.67 -38.56 16 20 C -0.24 -13.20 9.98 84.03 0.84 -12.36 16 21 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 23 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 24 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 C -0.11 -3.34 5.97 31.67 0.19 -3.15 16 29 O 0.12 2.18 11.04 65.84 0.73 2.90 16 30 N -0.36 -7.20 12.04 -48.88 -0.59 -7.79 16 31 H 0.07 0.32 6.57 -2.38 -0.02 0.31 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.46 7.49 -2.38 -0.02 0.44 16 37 H 0.09 0.37 6.57 -2.39 -0.02 0.36 16 38 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.20 2.61 7.66 -2.91 -0.02 2.59 16 40 H 0.42 5.45 8.13 -92.71 -0.75 4.70 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.37 20.15 7.73 -92.71 -0.72 19.43 16 48 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.06 1.87 7.74 -2.39 -0.02 1.85 16 50 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -69.80 407.26 2.96 -66.85 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.52 Total: 28.17 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.23 Total: -9.81 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -4.44 Total: -120.82 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.66 Total: -12.75 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -69.80 2.96 -66.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086822868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.643 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds