Wall clock time and date at job start Tue Mar 31 2020 18:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47286 * 350.58957 * 3 2 1 5 5 C 1.46846 * 111.00194 * 169.99993 * 4 3 2 6 6 C 1.53035 * 109.52393 * 185.83505 * 5 4 3 7 7 C 1.53114 * 109.28450 * 300.82341 * 6 5 4 8 8 C 1.50697 * 109.52668 * 177.55896 * 7 6 5 9 9 O 1.21278 * 119.99693 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99915 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99774 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.45368 * 35.02852 * 11 10 8 13 13 C 1.53042 * 109.45959 * 275.06836 * 11 10 8 14 14 C 1.53187 * 109.31736 * 178.61570 * 13 11 10 15 15 N 1.46928 * 108.77421 * 54.63103 * 14 13 11 16 16 C 1.36937 * 120.62870 * 126.37100 * 15 14 13 17 17 H 1.07996 * 120.00225 * 331.86707 * 16 15 14 18 18 C 1.38816 * 120.00005 * 151.86299 * 16 15 14 19 19 N 1.31624 * 119.99700 * 343.06859 * 18 16 15 20 20 Si 1.86798 * 120.00237 * 163.06296 * 18 16 15 21 21 H 1.48497 * 109.47044 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47275 * 120.00194 * 20 18 16 23 23 H 1.48503 * 109.47159 * 240.00192 * 20 18 16 24 24 C 1.46927 * 118.74220 * 306.39497 * 15 14 13 25 25 C 1.53036 * 109.46088 * 155.00260 * 11 10 8 26 26 H 1.09004 * 109.49636 * 301.33474 * 25 11 10 27 27 O 1.42896 * 109.52788 * 61.41474 * 25 11 10 28 28 C 1.53123 * 109.16115 * 57.64808 * 7 6 5 29 29 C 1.46849 * 111.00058 * 294.20886 * 4 3 2 30 30 H 4.40888 * 5.52066 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.47026 * 230.58484 * 3 2 1 32 32 H 1.09003 * 109.46773 * 110.59145 * 3 2 1 33 33 H 1.09003 * 109.45886 * 65.82431 * 5 4 3 34 34 H 1.08998 * 109.46355 * 305.85768 * 5 4 3 35 35 H 1.09002 * 109.50148 * 180.87575 * 6 5 4 36 36 H 1.09004 * 109.50307 * 60.76523 * 6 5 4 37 37 H 1.09003 * 109.51991 * 297.68956 * 7 6 5 38 38 H 0.96998 * 120.00116 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.49968 * 58.65977 * 13 11 10 40 40 H 1.09007 * 109.52189 * 298.58373 * 13 11 10 41 41 H 1.09003 * 109.58749 * 294.85101 * 14 13 11 42 42 H 1.08995 * 109.58946 * 174.42093 * 14 13 11 43 43 H 0.97002 * 119.99548 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58377 * 293.82306 * 24 15 14 45 45 H 1.09004 * 109.70844 * 173.46389 * 24 15 14 46 46 H 0.96697 * 114.00455 * 179.97438 * 27 25 11 47 47 H 1.09004 * 109.49565 * 62.29227 * 28 7 6 48 48 H 1.08996 * 109.50380 * 182.40995 * 28 7 6 49 49 H 1.09006 * 109.46222 * 294.18116 * 29 4 3 50 50 H 1.09002 * 109.46194 * 54.14152 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3654 0.2264 5 6 4.5847 -1.4492 -0.0009 6 6 5.0348 -2.9083 0.1011 7 6 4.6852 -3.4494 1.4901 8 6 5.0719 -4.9034 1.5762 9 8 5.5770 -5.4541 0.6209 10 7 4.8562 -5.5918 2.7146 11 6 5.2326 -7.0051 2.7985 12 1 6.1414 -7.1736 2.2207 13 6 4.1021 -7.8682 2.2336 14 6 4.5131 -9.3428 2.2909 15 7 4.8936 -9.6743 3.6708 16 6 4.3133 -10.7313 4.3198 17 1 3.3126 -11.0420 4.0583 18 6 5.0114 -11.4036 5.3136 19 7 6.3165 -11.2628 5.4113 20 14 4.0988 -12.5079 6.5123 21 1 2.6489 -12.4949 6.1917 22 1 4.6184 -13.8946 6.4019 23 1 4.3035 -12.0114 7.8969 24 6 5.9081 -8.8497 4.3415 25 6 5.4813 -7.3806 4.2611 26 1 6.2706 -6.7496 4.6696 27 8 4.2814 -7.1907 5.0136 28 6 3.1782 -3.3061 1.7207 29 6 2.7820 -1.8355 1.5718 30 1 -1.0498 -0.0003 0.0002 31 1 3.0091 0.6533 0.7940 32 1 3.0092 0.3623 -0.9621 33 1 5.1051 -0.8552 0.7505 34 1 4.8193 -1.0652 -0.9936 35 1 6.1123 -2.9682 -0.0523 36 1 4.5251 -3.5003 -0.6590 37 1 5.2260 -2.8831 2.2483 38 1 4.4525 -5.1512 3.4787 39 1 3.9096 -7.5841 1.1990 40 1 3.1991 -7.7189 2.8257 41 1 5.3613 -9.5118 1.6275 42 1 3.6752 -9.9680 1.9827 43 1 6.8043 -11.7329 6.1055 44 1 6.8700 -8.9785 3.8451 45 1 5.9930 -9.1489 5.3862 46 1 4.3664 -7.4104 5.9514 47 1 2.6393 -3.9044 0.9860 48 1 2.9293 -3.6503 2.7244 49 1 3.3109 -1.2397 2.3157 50 1 1.7072 -1.7320 1.7212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090831276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:16 Heat of formation + Delta-G solvation = -8.597030 kcal Electronic energy + Delta-G solvation = -29698.560329 eV Core-core repulsion = 25727.566894 eV Total energy + Delta-G solvation = -3970.993435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.33132 -38.94345 -37.80435 -34.81319 -34.76696 -34.29471 -32.57577 -31.91567 -31.05892 -29.44925 -29.06270 -27.58391 -25.22688 -23.88401 -23.41808 -22.35485 -21.79302 -20.52251 -19.73544 -19.28835 -18.45810 -17.43568 -16.94235 -16.30228 -15.94538 -15.58286 -15.43051 -15.16276 -14.93211 -14.84520 -14.13942 -13.98826 -13.79898 -13.78569 -13.46056 -13.33995 -13.14136 -13.02574 -12.64674 -12.30037 -12.10765 -11.98555 -11.66916 -11.42370 -11.26484 -11.13506 -11.00465 -10.81840 -10.78068 -10.64940 -10.57209 -10.47081 -10.43776 -10.15758 -10.03180 -9.74531 -9.46914 -9.16385 -8.72869 -8.66191 -8.49787 -6.68157 -5.82259 -3.23082 2.37927 2.54581 2.82484 3.33891 3.40543 3.43517 3.46326 3.68247 4.06525 4.44170 4.47266 4.54234 4.65975 4.83794 4.88359 4.96959 4.99779 5.09152 5.15242 5.26804 5.29619 5.30669 5.39236 5.45368 5.50192 5.54930 5.59069 5.62365 5.71193 5.82092 5.96690 5.98348 6.04643 6.18469 6.22756 6.31656 6.48357 6.58042 6.63101 6.70447 6.80644 6.88980 6.99593 7.17354 7.32111 7.42440 7.76927 7.80635 8.23331 8.42397 8.46857 9.17419 9.80481 10.37609 11.26596 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.002296 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.821243 B =12190.680488 C =12686.238840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.181 4.181 3 C 0.163 3.837 4 N -0.537 5.537 5 C 0.057 3.943 6 C -0.095 4.095 7 C -0.108 4.108 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.718 5.718 11 C 0.162 3.838 12 H 0.089 0.911 13 C -0.135 4.135 14 C 0.148 3.852 15 N -0.583 5.583 16 C -0.241 4.241 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.907 5.907 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.146 3.854 25 C 0.073 3.927 26 H 0.042 0.958 27 O -0.560 6.560 28 C -0.107 4.107 29 C 0.058 3.942 30 H 0.217 0.783 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.400 0.600 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.019 0.981 42 H 0.057 0.943 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.374 0.626 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.037 0.963 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 23.666 -6.045 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C 0.036 3.964 4 N -0.262 5.262 5 C -0.070 4.070 6 C -0.133 4.133 7 C -0.130 4.130 8 C 0.300 3.700 9 O -0.421 6.421 10 N -0.368 5.368 11 C 0.059 3.941 12 H 0.107 0.893 13 C -0.175 4.175 14 C 0.021 3.979 15 N -0.305 5.305 16 C -0.370 4.370 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.553 5.553 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.018 3.982 25 C 0.012 3.988 26 H 0.060 0.940 27 O -0.365 6.365 28 C -0.145 4.145 29 C -0.070 4.070 30 H 0.234 0.766 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.234 0.766 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.113 0.887 46 H 0.221 0.779 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.838 23.026 -7.544 24.709 hybrid contribution -0.124 -0.051 2.236 2.240 sum -4.962 22.976 -5.308 24.097 Atomic orbital electron populations 1.24919 0.95930 0.99519 1.01100 1.22817 0.94184 1.00837 1.00352 1.18979 0.85255 0.89986 1.02174 1.61888 1.14429 1.21276 1.28565 1.22149 0.86188 0.97377 1.01305 1.21391 1.01730 0.94357 0.95856 1.21398 0.97834 0.93691 1.00067 1.20522 0.78257 0.88433 0.82835 1.90692 1.43840 1.70920 1.36617 1.46232 1.63118 1.12171 1.15285 1.20984 0.98880 0.78955 0.95330 0.89331 1.22282 0.98576 0.97293 0.99354 1.20900 0.97628 0.92079 0.87311 1.43882 1.46423 1.31531 1.08681 1.19224 0.96194 1.06244 1.15369 0.91644 1.25037 0.95006 0.98314 1.01653 1.70032 1.05213 1.45595 1.34440 0.86209 0.79330 0.80109 0.81070 1.20269 1.21808 1.21659 1.21426 0.90842 0.85169 1.00716 1.22834 0.86327 0.99560 0.90086 0.94017 1.86342 1.35729 1.89984 1.24441 1.21574 0.93803 0.96338 1.02761 1.22110 1.01195 0.95425 0.88222 0.76627 0.92484 0.88411 0.94529 0.90086 0.90527 0.90008 0.89107 0.76556 0.92939 0.91278 0.96272 0.92471 0.93718 0.95508 0.88694 0.77878 0.90286 0.90651 0.94495 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.18 -1.61 12.34 -37.12 -0.46 -2.07 16 3 C 0.16 1.20 5.46 -6.61 -0.04 1.16 16 4 N -0.54 -4.69 4.63 -238.18 -1.10 -5.80 16 5 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 6 C -0.10 -0.97 4.68 -26.65 -0.12 -1.09 16 7 C -0.11 -1.13 2.59 -91.65 -0.24 -1.37 16 8 C 0.51 7.44 7.12 -10.99 -0.08 7.36 16 9 O -0.54 -9.98 15.64 5.56 0.09 -9.89 16 10 N -0.72 -10.37 4.96 -53.77 -0.27 -10.64 16 11 C 0.16 2.87 2.20 -67.89 -0.15 2.72 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 13 C -0.13 -2.57 5.51 -26.61 -0.15 -2.72 16 14 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 15 N -0.58 -14.37 2.93 -172.32 -0.51 -14.87 16 16 C -0.24 -6.50 9.58 -15.06 -0.14 -6.64 16 17 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 18 C 0.00 -0.06 4.92 -17.43 -0.09 -0.15 16 19 N -0.91 -25.67 11.19 55.49 0.62 -25.05 16 20 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.15 3.30 4.94 -3.71 -0.02 3.28 16 25 C 0.07 1.32 3.38 -26.61 -0.09 1.23 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 O -0.56 -9.70 12.09 -35.23 -0.43 -10.13 16 28 C -0.11 -1.03 5.26 -26.65 -0.14 -1.17 16 29 C 0.06 0.50 5.30 -3.84 -0.02 0.48 16 30 H 0.22 1.04 7.80 -54.10 -0.42 0.62 16 31 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.10 0.59 7.99 -51.93 -0.41 0.18 16 33 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.55 8.02 -51.93 -0.42 0.13 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 5.04 7.75 -40.82 -0.32 4.73 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.38 7.61 -51.93 -0.40 0.99 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 2.36 6.06 -51.93 -0.31 2.04 16 46 H 0.37 5.64 9.08 45.56 0.41 6.06 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 49 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.08 0.71 7.11 -51.93 -0.37 0.34 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -32.11 397.10 -9.48 -41.58 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.63 Total: 8.83 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.21 Total: 3.66 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -1.25 Total: -56.36 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.34 Total: -20.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.11 -9.48 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090831276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.987 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds