Wall clock time and date at job start Tue Mar 31 2020 18:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47286 * 350.58957 * 3 2 1 5 5 C 1.46846 * 111.00194 * 169.99993 * 4 3 2 6 6 C 1.53035 * 109.52393 * 185.83505 * 5 4 3 7 7 C 1.53114 * 109.28450 * 300.82341 * 6 5 4 8 8 C 1.50697 * 109.52668 * 177.55896 * 7 6 5 9 9 O 1.21278 * 119.99693 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99915 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99774 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.45368 * 35.02852 * 11 10 8 13 13 C 1.53042 * 109.45959 * 275.06836 * 11 10 8 14 14 C 1.53187 * 109.31736 * 178.61570 * 13 11 10 15 15 N 1.46928 * 108.77421 * 54.63103 * 14 13 11 16 16 C 1.36937 * 120.62870 * 126.37100 * 15 14 13 17 17 H 1.07996 * 120.00225 * 331.86707 * 16 15 14 18 18 C 1.38816 * 120.00005 * 151.86299 * 16 15 14 19 19 N 1.31624 * 119.99700 * 343.06859 * 18 16 15 20 20 Si 1.86798 * 120.00237 * 163.06296 * 18 16 15 21 21 H 1.48497 * 109.47044 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47275 * 120.00194 * 20 18 16 23 23 H 1.48503 * 109.47159 * 240.00192 * 20 18 16 24 24 C 1.46927 * 118.74220 * 306.39497 * 15 14 13 25 25 C 1.53036 * 109.46088 * 155.00260 * 11 10 8 26 26 H 1.09004 * 109.49636 * 301.33474 * 25 11 10 27 27 O 1.42896 * 109.52788 * 61.41474 * 25 11 10 28 28 C 1.53123 * 109.16115 * 57.64808 * 7 6 5 29 29 C 1.46849 * 111.00058 * 294.20886 * 4 3 2 30 30 H 4.40888 * 5.52066 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.47026 * 230.58484 * 3 2 1 32 32 H 1.09003 * 109.46773 * 110.59145 * 3 2 1 33 33 H 1.09003 * 109.45886 * 65.82431 * 5 4 3 34 34 H 1.08998 * 109.46355 * 305.85768 * 5 4 3 35 35 H 1.09002 * 109.50148 * 180.87575 * 6 5 4 36 36 H 1.09004 * 109.50307 * 60.76523 * 6 5 4 37 37 H 1.09003 * 109.51991 * 297.68956 * 7 6 5 38 38 H 0.96998 * 120.00116 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.49968 * 58.65977 * 13 11 10 40 40 H 1.09007 * 109.52189 * 298.58373 * 13 11 10 41 41 H 1.09003 * 109.58749 * 294.85101 * 14 13 11 42 42 H 1.08995 * 109.58946 * 174.42093 * 14 13 11 43 43 H 0.97002 * 119.99548 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58377 * 293.82306 * 24 15 14 45 45 H 1.09004 * 109.70844 * 173.46389 * 24 15 14 46 46 H 0.96697 * 114.00455 * 179.97438 * 27 25 11 47 47 H 1.09004 * 109.49565 * 62.29227 * 28 7 6 48 48 H 1.08996 * 109.50380 * 182.40995 * 28 7 6 49 49 H 1.09006 * 109.46222 * 294.18116 * 29 4 3 50 50 H 1.09002 * 109.46194 * 54.14152 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3654 0.2264 5 6 4.5847 -1.4492 -0.0009 6 6 5.0348 -2.9083 0.1011 7 6 4.6852 -3.4494 1.4901 8 6 5.0719 -4.9034 1.5762 9 8 5.5770 -5.4541 0.6209 10 7 4.8562 -5.5918 2.7146 11 6 5.2326 -7.0051 2.7985 12 1 6.1414 -7.1736 2.2207 13 6 4.1021 -7.8682 2.2336 14 6 4.5131 -9.3428 2.2909 15 7 4.8936 -9.6743 3.6708 16 6 4.3133 -10.7313 4.3198 17 1 3.3126 -11.0420 4.0583 18 6 5.0114 -11.4036 5.3136 19 7 6.3165 -11.2628 5.4113 20 14 4.0988 -12.5079 6.5123 21 1 2.6489 -12.4949 6.1917 22 1 4.6184 -13.8946 6.4019 23 1 4.3035 -12.0114 7.8969 24 6 5.9081 -8.8497 4.3415 25 6 5.4813 -7.3806 4.2611 26 1 6.2706 -6.7496 4.6696 27 8 4.2814 -7.1907 5.0136 28 6 3.1782 -3.3061 1.7207 29 6 2.7820 -1.8355 1.5718 30 1 -1.0498 -0.0003 0.0002 31 1 3.0091 0.6533 0.7940 32 1 3.0092 0.3623 -0.9621 33 1 5.1051 -0.8552 0.7505 34 1 4.8193 -1.0652 -0.9936 35 1 6.1123 -2.9682 -0.0523 36 1 4.5251 -3.5003 -0.6590 37 1 5.2260 -2.8831 2.2483 38 1 4.4525 -5.1512 3.4787 39 1 3.9096 -7.5841 1.1990 40 1 3.1991 -7.7189 2.8257 41 1 5.3613 -9.5118 1.6275 42 1 3.6752 -9.9680 1.9827 43 1 6.8043 -11.7329 6.1055 44 1 6.8700 -8.9785 3.8451 45 1 5.9930 -9.1489 5.3862 46 1 4.3664 -7.4104 5.9514 47 1 2.6393 -3.9044 0.9860 48 1 2.9293 -3.6503 2.7244 49 1 3.3109 -1.2397 2.3157 50 1 1.7072 -1.7320 1.7212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090831276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:15 Heat of formation + Delta-G solvation = -32.266665 kcal Electronic energy + Delta-G solvation = -29699.586721 eV Core-core repulsion = 25727.566894 eV Total energy + Delta-G solvation = -3972.019827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43174 -40.04158 -39.09165 -36.49136 -35.71996 -35.52027 -33.92820 -33.07005 -31.78939 -31.13840 -30.68816 -28.38177 -26.92018 -24.92153 -24.17089 -23.93545 -23.38192 -21.55462 -21.06855 -20.50252 -19.16366 -19.00073 -18.11789 -17.54062 -17.12087 -16.99388 -16.60612 -16.25235 -15.99783 -15.70540 -15.62661 -15.40998 -15.26992 -14.93543 -14.71030 -14.61751 -14.12484 -13.94633 -13.71975 -13.69736 -13.63986 -13.14142 -13.00131 -12.76834 -12.64830 -12.48416 -12.36436 -12.25612 -12.15541 -12.00418 -11.82148 -11.77760 -11.52036 -11.42111 -11.28385 -11.02457 -10.79190 -10.63180 -10.59900 -9.98185 -9.30064 -8.68108 -7.88270 -5.32730 1.46578 1.49790 1.60232 1.66528 1.78450 1.95877 2.20937 2.51352 3.09655 3.24418 3.39884 3.54474 3.57192 3.67309 3.78449 3.86299 3.89825 4.02906 4.22208 4.24799 4.34723 4.38169 4.40059 4.42961 4.54233 4.59172 4.59562 4.68530 4.74595 4.76531 4.86366 4.91236 4.94703 4.96518 5.05848 5.10799 5.14812 5.17855 5.19942 5.37308 5.42690 5.54646 5.55821 5.65000 6.04888 6.11179 6.36772 6.63695 6.74839 6.92023 7.14299 7.31078 7.81723 8.35142 9.18347 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.002296 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.821243 B =12190.680488 C =12686.238840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.210 4.210 3 C 0.162 3.838 4 N -0.555 5.555 5 C 0.064 3.936 6 C -0.093 4.093 7 C -0.097 4.097 8 C 0.512 3.488 9 O -0.585 6.585 10 N -0.707 5.707 11 C 0.169 3.831 12 H 0.070 0.930 13 C -0.117 4.117 14 C 0.144 3.856 15 N -0.598 5.598 16 C -0.252 4.252 17 H 0.061 0.939 18 C -0.048 4.048 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.271 1.271 22 H -0.296 1.296 23 H -0.285 1.285 24 C 0.150 3.850 25 C 0.092 3.908 26 H 0.069 0.931 27 O -0.560 6.560 28 C -0.101 4.101 29 C 0.063 3.937 30 H 0.239 0.761 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.119 0.881 38 H 0.413 0.587 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.010 0.990 42 H 0.054 0.946 43 H 0.251 0.749 44 H 0.003 0.997 45 H 0.073 0.927 46 H 0.386 0.614 47 H 0.054 0.946 48 H 0.086 0.914 49 H 0.054 0.946 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 26.091 -5.091 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.211 4.211 3 C 0.036 3.964 4 N -0.280 5.280 5 C -0.063 4.063 6 C -0.132 4.132 7 C -0.119 4.119 8 C 0.300 3.700 9 O -0.465 6.465 10 N -0.358 5.358 11 C 0.064 3.936 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.018 3.982 15 N -0.321 5.321 16 C -0.383 4.383 17 H 0.079 0.921 18 C -0.243 4.243 19 N -0.582 5.582 20 Si 0.796 3.204 21 H -0.196 1.196 22 H -0.224 1.224 23 H -0.211 1.211 24 C 0.023 3.977 25 C 0.031 3.969 26 H 0.087 0.913 27 O -0.367 6.367 28 C -0.139 4.139 29 C -0.065 4.065 30 H 0.255 0.745 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.250 0.750 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.235 0.765 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.072 0.928 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.789 25.495 -6.575 26.958 hybrid contribution 0.149 -0.839 1.861 2.047 sum -5.640 24.655 -4.715 25.728 Atomic orbital electron populations 1.25653 0.96900 0.98807 1.00563 1.23384 0.95169 1.01532 1.00976 1.19074 0.84564 0.89399 1.03343 1.61830 1.14955 1.22466 1.28774 1.22095 0.85914 0.95626 1.02675 1.21350 1.01264 0.95735 0.94823 1.21405 0.98673 0.90640 1.01139 1.21278 0.77000 0.89923 0.81811 1.90680 1.45679 1.72137 1.38023 1.46022 1.63019 1.10668 1.16052 1.20649 0.97518 0.80758 0.94719 0.91172 1.22042 0.98734 0.95529 0.99444 1.20969 0.97133 0.94043 0.86057 1.44102 1.46611 1.31680 1.09695 1.19445 0.96135 1.06971 1.15717 0.92144 1.25727 0.95645 0.99852 1.03097 1.70174 1.06457 1.46641 1.34968 0.85201 0.78351 0.77844 0.78955 1.19571 1.22363 1.21116 1.21325 0.89613 0.88019 0.98739 1.22483 0.87298 0.96497 0.90636 0.91304 1.86316 1.35236 1.89688 1.25432 1.21529 0.92685 0.97124 1.02595 1.22042 1.01106 0.94532 0.88774 0.74461 0.90973 0.87300 0.92607 0.88982 0.90839 0.92797 0.86267 0.74991 0.92793 0.91712 0.97246 0.92699 0.93993 0.97946 0.90889 0.76497 0.92696 0.89561 0.92755 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 19.25 74.32 1.43 -1.47 16 2 C -0.21 -3.38 12.34 31.12 0.38 -3.00 16 3 C 0.16 2.02 5.46 84.50 0.46 2.48 16 4 N -0.55 -8.51 4.63 -907.47 -4.21 -12.72 16 5 C 0.06 0.84 5.46 86.33 0.47 1.31 16 6 C -0.09 -1.78 4.68 30.64 0.14 -1.64 16 7 C -0.10 -1.83 2.59 -11.46 -0.03 -1.86 16 8 C 0.51 14.28 7.12 87.66 0.62 14.91 16 9 O -0.59 -21.58 15.64 -3.02 -0.05 -21.63 16 10 N -0.71 -19.27 4.96 -442.42 -2.19 -21.46 16 11 C 0.17 5.87 2.20 45.02 0.10 5.97 16 12 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 13 C -0.12 -4.47 5.51 30.67 0.17 -4.30 16 14 C 0.14 6.43 6.52 86.36 0.56 6.99 16 15 N -0.60 -29.94 2.93 -699.09 -2.05 -31.99 16 16 C -0.25 -13.77 9.58 84.03 0.81 -12.97 16 17 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 18 C -0.05 -2.63 4.92 84.86 0.42 -2.21 16 19 N -0.94 -53.78 11.19 21.65 0.24 -53.53 16 20 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.15 6.89 4.94 86.36 0.43 7.31 16 25 C 0.09 3.21 3.38 30.67 0.10 3.32 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 O -0.56 -18.33 12.09 -148.98 -1.80 -20.13 16 28 C -0.10 -1.76 5.26 30.65 0.16 -1.59 16 29 C 0.06 0.92 5.30 86.32 0.46 1.38 16 30 H 0.24 1.85 7.80 -4.43 -0.03 1.82 16 31 H 0.07 0.67 8.12 -2.39 -0.02 0.66 16 32 H 0.11 1.07 7.99 -2.39 -0.02 1.05 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 1.02 8.02 -2.39 -0.02 1.00 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.33 8.04 -2.39 -0.02 1.31 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.41 9.26 7.75 -92.71 -0.72 8.54 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.53 7.61 -2.38 -0.02 2.52 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.05 2.41 7.93 -2.39 -0.02 2.39 16 43 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.07 3.68 6.06 -2.39 -0.01 3.66 16 46 H 0.39 10.87 9.08 -74.06 -0.67 10.19 16 47 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.09 1.30 7.67 -2.39 -0.02 1.28 16 49 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.07 1.18 7.11 -2.39 -0.02 1.16 16 Total: -1.00 -70.34 397.10 -1.79 -72.14 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.45 Total: 28.60 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 6.69 Total: 14.63 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -8.21 Total: -119.71 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.85 Total: -41.76 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.34 -1.79 -72.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090831276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.871 kcal (2) G-P(sol) polarization free energy of solvation -70.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds