Wall clock time and date at job start Tue Mar 31 2020 19:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.46767 * 124.34721 * 119.99779 * 4 2 1 6 6 C 1.54480 * 105.47120 * 197.01875 * 5 4 2 7 7 H 1.09006 * 110.97088 * 92.74034 * 6 5 4 8 8 C 1.50694 * 110.97155 * 216.46493 * 6 5 4 9 9 O 1.21284 * 119.99994 * 0.02562 * 8 6 5 10 10 N 1.34779 * 120.00231 * 179.97438 * 8 6 5 11 11 C 1.46496 * 119.99993 * 180.02562 * 10 8 6 12 12 H 1.08997 * 110.56510 * 34.30207 * 11 10 8 13 13 C 1.54863 * 110.62745 * 271.40025 * 11 10 8 14 14 C 1.55838 * 103.44615 * 241.51149 * 13 11 10 15 15 H 1.09000 * 115.55781 * 158.81041 * 14 13 11 16 16 C 1.55842 * 105.06477 * 287.42315 * 14 13 11 17 17 C 1.54846 * 103.44812 * 71.82822 * 16 14 13 18 18 C 1.55848 * 110.62622 * 157.20633 * 11 10 8 19 19 H 1.08994 * 115.55877 * 318.92132 * 18 11 10 20 20 N 1.50234 * 101.05337 * 32.93862 * 14 13 11 21 21 C 1.36939 * 130.84072 * 126.00911 * 20 14 13 22 22 H 1.08003 * 119.99792 * 180.02562 * 21 20 14 23 23 C 1.38810 * 120.00087 * 0.02742 * 21 20 14 24 24 N 1.31621 * 119.99665 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00125 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47248 * 89.99829 * 25 23 21 27 27 H 1.48501 * 109.47071 * 210.00084 * 25 23 21 28 28 H 1.48503 * 109.47117 * 330.00140 * 25 23 21 29 29 C 1.54631 * 101.76582 * 334.58764 * 6 5 4 30 30 C 1.34416 * 124.34688 * 299.70324 * 4 2 1 31 31 O 1.21277 * 124.94402 * 359.57287 * 30 4 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 37 37 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 39 39 H 1.09000 * 110.24804 * 316.01736 * 5 4 2 40 40 H 1.09002 * 110.24402 * 78.02197 * 5 4 2 41 41 H 0.96996 * 120.00043 * 0.02562 * 10 8 6 42 42 H 1.09004 * 110.62073 * 0.02562 * 13 11 10 43 43 H 1.08997 * 110.62444 * 122.86191 * 13 11 10 44 44 H 1.09001 * 110.62334 * 190.31854 * 16 14 13 45 45 H 1.09003 * 110.62533 * 313.33336 * 16 14 13 46 46 H 1.08995 * 110.63132 * 118.49298 * 17 16 14 47 47 H 1.09002 * 110.62388 * 241.35270 * 17 16 14 48 48 H 0.96997 * 119.99706 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.48482 * 143.47406 * 29 6 5 50 50 H 1.09001 * 110.48613 * 265.98233 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8656 -1.8888 1.1726 6 6 2.7610 -2.4954 2.5894 7 1 1.9681 -3.2420 2.6366 8 6 4.0787 -3.0843 3.0227 9 8 5.0373 -3.0365 2.2812 10 7 4.1923 -3.6633 4.2345 11 6 5.4735 -4.2352 4.6558 12 1 6.3030 -3.6506 4.2583 13 6 5.5844 -5.7137 4.2084 14 6 5.7150 -6.4904 5.5531 15 1 5.4499 -7.5469 5.5135 16 6 7.1535 -6.1767 6.0639 17 6 7.0623 -4.6968 6.5105 18 6 5.5539 -4.3162 6.2101 19 1 5.1585 -3.4540 6.7470 20 7 4.8751 -5.6377 6.4610 21 6 3.8175 -5.9614 7.2685 22 1 3.3334 -5.1961 7.8570 23 6 3.3678 -7.2732 7.3306 24 7 3.9582 -8.2059 6.6137 25 14 1.9257 -7.7149 8.4326 26 1 0.6593 -7.5788 7.6691 27 1 2.0725 -9.1161 8.9021 28 1 1.8988 -6.8010 9.6028 29 6 2.4039 -1.2535 3.4386 30 6 1.7528 -0.3050 2.4561 31 8 1.0859 0.6610 2.7609 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6766 1.9564 -0.8899 39 1 2.4967 -2.5972 0.4308 40 1 3.8982 -1.6164 0.9542 41 1 3.4257 -3.7012 4.8276 42 1 4.6862 -6.0210 3.6726 43 1 6.4689 -5.8620 3.5889 44 1 7.4094 -6.8173 6.9078 45 1 7.8801 -6.2910 5.2595 46 1 7.2731 -4.6034 7.5758 47 1 7.7457 -4.0776 5.9294 48 1 3.6437 -9.1224 6.6569 49 1 1.7074 -1.5218 4.2329 50 1 3.3052 -0.8061 3.8579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097166544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:02 Heat of formation + Delta-G solvation = -28.477229 kcal Electronic energy + Delta-G solvation = -30165.290659 eV Core-core repulsion = 26193.435154 eV Total energy + Delta-G solvation = -3971.855505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99828 -39.63998 -38.38334 -36.43847 -35.05618 -33.89325 -32.57183 -30.58440 -29.17974 -28.76064 -27.96015 -27.55349 -27.42661 -24.33984 -23.53612 -22.62563 -21.15872 -19.93023 -19.69195 -19.05404 -18.69900 -17.48623 -17.04292 -16.79942 -15.99199 -15.89493 -15.21987 -14.89225 -14.69034 -14.34055 -14.00101 -13.99200 -13.93359 -13.80313 -13.52898 -13.12836 -12.92619 -12.87441 -12.30122 -12.20500 -12.03906 -11.92325 -11.74420 -11.52992 -11.44767 -11.34120 -11.25282 -11.17011 -10.99273 -10.94106 -10.57460 -10.40407 -10.14402 -10.01373 -9.92258 -9.64456 -9.29617 -9.19849 -9.02334 -8.87235 -8.54998 -7.00873 -5.80029 -3.19532 2.44966 2.69319 2.79922 3.32310 3.38213 3.40030 3.43154 4.11612 4.21924 4.35539 4.62290 4.70821 4.79590 4.80750 4.95118 5.06692 5.15139 5.27558 5.29880 5.37505 5.39386 5.44183 5.55907 5.56123 5.60391 5.61743 5.66172 5.77673 5.77755 5.94552 6.00530 6.01186 6.04312 6.09414 6.24824 6.36460 6.43442 6.44737 6.54548 6.68649 6.77720 6.89412 6.95570 7.03816 7.26937 7.41424 7.73557 7.86930 8.03714 8.11464 8.46582 9.01556 9.64740 10.45435 11.28663 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002995 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.962127 B = 9346.793133 C =10409.170334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.616 5.616 5 C 0.118 3.882 6 C -0.125 4.125 7 H 0.116 0.884 8 C 0.522 3.478 9 O -0.548 6.548 10 N -0.699 5.699 11 C 0.128 3.872 12 H 0.079 0.921 13 C -0.142 4.142 14 C 0.155 3.845 15 H 0.152 0.848 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.124 3.876 19 H 0.090 0.910 20 N -0.589 5.589 21 C -0.216 4.216 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.145 4.145 30 C 0.523 3.477 31 O -0.530 6.530 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.404 0.596 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.111 0.889 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 12.163 -11.268 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.351 5.351 5 C -0.005 4.005 6 C -0.146 4.146 7 H 0.134 0.866 8 C 0.307 3.693 9 O -0.426 6.426 10 N -0.348 5.348 11 C 0.022 3.978 12 H 0.097 0.903 13 C -0.182 4.182 14 C 0.048 3.952 15 H 0.169 0.831 16 C -0.179 4.179 17 C -0.169 4.169 18 C 0.015 3.985 19 H 0.108 0.892 20 N -0.310 5.310 21 C -0.344 4.344 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.186 4.186 30 C 0.311 3.689 31 O -0.407 6.407 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.239 0.761 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.129 0.871 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.395 12.506 -11.541 17.075 hybrid contribution -1.021 -0.442 0.810 1.376 sum -2.416 12.064 -10.731 16.326 Atomic orbital electron populations 1.22186 0.94672 1.02444 1.03250 1.20937 0.94427 0.93145 0.86480 1.22189 1.01399 0.95776 1.03253 1.48491 1.51215 1.29232 1.06169 1.22002 0.96384 0.86105 0.96037 1.22244 0.98106 0.98232 0.96065 0.86550 1.19935 0.88989 0.78299 0.82127 1.90676 1.39649 1.59258 1.53046 1.46002 1.14896 1.57147 1.16728 1.22668 0.84016 0.94300 0.96834 0.90280 1.23452 1.00260 0.94767 0.99750 1.23706 0.86538 0.99205 0.85764 0.83126 1.23044 0.99674 0.95486 0.99708 1.23302 0.96442 0.97114 1.00001 1.23724 0.92435 0.90844 0.91471 0.89188 1.46586 1.33869 1.01718 1.48787 1.19001 1.04712 0.93358 1.17305 0.90360 1.24703 0.99850 0.95624 1.00321 1.69465 1.42451 1.01161 1.43553 0.86074 0.81869 0.77593 0.79928 1.21682 1.21707 1.20771 1.22345 1.03432 0.94359 0.98414 1.20721 0.79508 0.84972 0.83691 1.90690 1.39852 1.28641 1.81519 0.90994 0.92408 0.91509 0.89367 0.90945 0.92404 0.91525 0.89904 0.88959 0.76103 0.92262 0.92827 0.92637 0.93263 0.92532 0.92973 0.93513 0.87057 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.20 37.16 0.34 -1.13 16 2 C 0.15 1.37 3.47 -67.93 -0.24 1.13 16 3 C -0.17 -1.51 9.19 37.16 0.34 -1.17 16 4 N -0.62 -6.50 2.83 -164.84 -0.47 -6.97 16 5 C 0.12 1.19 6.66 -3.12 -0.02 1.17 16 6 C -0.12 -1.34 3.55 -90.14 -0.32 -1.66 16 7 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 8 C 0.52 7.42 7.06 -10.99 -0.08 7.34 16 9 O -0.55 -9.41 15.19 5.55 0.08 -9.33 16 10 N -0.70 -10.58 5.08 -51.39 -0.26 -10.84 16 11 C 0.13 2.20 2.75 -65.43 -0.18 2.02 16 12 H 0.08 1.37 7.32 -51.93 -0.38 0.99 16 13 C -0.14 -2.73 6.22 -24.23 -0.15 -2.88 16 14 C 0.15 3.36 4.67 -62.81 -0.29 3.06 16 15 H 0.15 3.80 5.52 -51.93 -0.29 3.52 16 16 C -0.14 -2.65 6.45 -24.24 -0.16 -2.81 16 17 C -0.13 -2.22 6.53 -22.75 -0.15 -2.37 16 18 C 0.12 2.26 5.20 -61.06 -0.32 1.94 16 19 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 20 N -0.59 -13.23 3.01 -143.91 -0.43 -13.66 16 21 C -0.22 -5.40 10.59 -15.06 -0.16 -5.56 16 22 H 0.08 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.92 -24.96 10.47 55.49 0.58 -24.38 16 25 Si 0.91 20.81 29.55 -169.99 -5.02 15.79 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C -0.15 -1.53 6.41 -26.74 -0.17 -1.70 16 30 C 0.52 6.51 7.41 -10.86 -0.08 6.43 16 31 O -0.53 -8.16 15.12 5.56 0.08 -8.08 16 32 H 0.07 0.80 6.82 -51.93 -0.35 0.45 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.63 8.07 -51.93 -0.42 0.22 16 36 H 0.07 0.82 6.75 -51.93 -0.35 0.47 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 41 H 0.40 5.91 8.64 -40.82 -0.35 5.56 16 42 H 0.06 1.23 7.98 -51.93 -0.41 0.81 16 43 H 0.05 0.97 7.81 -51.93 -0.41 0.56 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 48 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.11 1.14 7.89 -51.93 -0.41 0.73 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -30.02 390.39 -9.60 -39.62 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.32 Total: 8.48 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.72 Total: 3.49 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.58 Total: -55.85 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.17 Total: -17.41 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.02 -9.60 -39.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097166544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.144 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds