Wall clock time and date at job start Tue Mar 31 2020 19:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46813 * 2 1 4 4 N 1.46497 * 109.46943 * 119.99904 * 2 1 3 5 5 C 1.34413 * 124.35463 * 299.99759 * 4 2 1 6 6 O 1.21283 * 124.94031 * 359.62849 * 5 4 2 7 7 C 1.51281 * 110.11648 * 179.59595 * 5 4 2 8 8 C 1.54619 * 104.19775 * 343.74848 * 7 5 4 9 9 C 1.46768 * 124.34381 * 120.00561 * 4 2 1 10 10 H 1.09000 * 110.25007 * 78.01166 * 9 4 2 11 11 C 1.50696 * 110.24547 * 316.00741 * 9 4 2 12 12 O 1.21284 * 120.00062 * 2.50341 * 11 9 4 13 13 N 1.34777 * 120.00117 * 182.50001 * 11 9 4 14 14 C 1.46504 * 120.00164 * 180.02562 * 13 11 9 15 15 H 1.09000 * 110.55755 * 32.09916 * 14 13 11 16 16 C 1.54851 * 110.62468 * 269.02594 * 14 13 11 17 17 C 1.55839 * 103.44580 * 241.50916 * 16 14 13 18 18 H 1.09002 * 115.56312 * 158.81683 * 17 16 14 19 19 C 1.55846 * 105.06512 * 288.17881 * 17 16 14 20 20 C 1.54844 * 103.44573 * 71.82425 * 19 17 16 21 21 C 1.55840 * 103.44768 * 0.02562 * 20 19 17 22 22 H 1.08996 * 116.13264 * 159.15134 * 21 20 19 23 23 N 1.50241 * 101.05324 * 32.94131 * 17 16 14 24 24 C 1.36927 * 130.84302 * 126.04921 * 23 17 16 25 25 H 1.07996 * 120.00223 * 179.97438 * 24 23 17 26 26 C 1.38816 * 119.99908 * 359.97438 * 24 23 17 27 27 N 1.31613 * 119.99944 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 120.00150 * 180.02562 * 26 24 23 29 29 H 1.48505 * 109.47024 * 359.97438 * 28 26 24 30 30 H 1.48502 * 109.47327 * 119.99416 * 28 26 24 31 31 H 1.48501 * 109.47039 * 239.99652 * 28 26 24 32 32 H 1.09000 * 109.47716 * 59.99806 * 1 2 3 33 33 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46964 * 299.99995 * 1 2 3 35 35 H 1.08996 * 109.46760 * 240.00278 * 2 1 3 36 36 H 1.09005 * 109.47208 * 180.02562 * 3 2 1 37 37 H 1.09006 * 109.47673 * 300.00149 * 3 2 1 38 38 H 1.09004 * 109.47352 * 60.00242 * 3 2 1 39 39 H 1.09007 * 110.48265 * 225.06772 * 7 5 4 40 40 H 1.09005 * 110.48391 * 102.43228 * 7 5 4 41 41 H 1.08996 * 110.97085 * 266.68176 * 8 7 5 42 42 H 1.08999 * 110.96983 * 142.91439 * 8 7 5 43 43 H 0.97001 * 120.00238 * 0.02562 * 13 11 9 44 44 H 1.08999 * 110.62840 * 0.02562 * 16 14 13 45 45 H 1.09001 * 110.62759 * 123.02133 * 16 14 13 46 46 H 1.08996 * 110.62529 * 190.31511 * 19 17 16 47 47 H 1.08997 * 110.62429 * 313.17155 * 19 17 16 48 48 H 1.09001 * 110.62844 * 241.51031 * 20 19 17 49 49 H 1.09001 * 110.62755 * 118.49310 * 20 19 17 50 50 H 0.97002 * 120.00419 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7481 -0.3083 2.4561 6 8 1.0756 0.6539 2.7610 7 6 2.4040 -1.2534 3.4386 8 6 2.7610 -2.4953 2.5896 9 6 2.8656 -1.8887 1.1726 10 1 3.8982 -1.6163 0.9543 11 6 2.3556 -2.8681 0.1472 12 8 1.4002 -2.5812 -0.5428 13 7 2.9610 -4.0628 -0.0033 14 6 2.4655 -5.0147 -1.0007 15 1 2.0512 -4.4876 -1.8601 16 6 1.4103 -5.9599 -0.3754 17 6 2.0524 -7.3716 -0.5286 18 1 1.6690 -8.1383 0.1448 19 6 1.9686 -7.6917 -2.0515 20 6 3.0238 -6.7465 -2.6766 21 6 3.6019 -5.9845 -1.4463 22 1 4.5829 -5.5290 -1.5813 23 7 3.5109 -7.0419 -0.3834 24 6 4.4643 -7.5495 0.4582 25 1 5.4777 -7.1790 0.4123 26 6 4.1283 -8.5405 1.3703 27 7 2.8933 -8.9917 1.4266 28 14 5.4288 -9.2326 2.5190 29 1 6.7277 -8.5618 2.2576 30 1 5.0227 -8.9943 3.9274 31 1 5.5700 -10.6922 2.2847 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 1.7074 -1.5216 4.2330 40 1 3.3054 -0.8045 3.8559 41 1 1.9677 -3.2413 2.6369 42 1 3.7141 -2.9212 2.9029 43 1 3.7249 -4.2924 0.5487 44 1 1.2553 -5.7202 0.6765 45 1 0.4707 -5.9038 -0.9252 46 1 2.2271 -8.7337 -2.2396 47 1 0.9736 -7.4687 -2.4365 48 1 2.5529 -6.0519 -3.3724 49 1 3.8056 -7.3197 -3.1749 50 1 2.6583 -9.6839 2.0643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097706791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:30 Heat of formation + Delta-G solvation = -23.885881 kcal Electronic energy + Delta-G solvation = -31002.038918 eV Core-core repulsion = 27030.382509 eV Total energy + Delta-G solvation = -3971.656409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06198 -39.60077 -38.33021 -36.15280 -35.16529 -33.79478 -32.60013 -30.11229 -29.37626 -29.18757 -28.52471 -27.12667 -27.08105 -24.29174 -22.95048 -22.40888 -21.54025 -20.04216 -19.88455 -18.95900 -18.59167 -17.38886 -17.06583 -16.95359 -15.83795 -15.69399 -15.08075 -14.89760 -14.75627 -14.22487 -14.05354 -13.85470 -13.80592 -13.67799 -13.39806 -13.15121 -12.84423 -12.63370 -12.15020 -12.07376 -12.01485 -11.87468 -11.86164 -11.36378 -11.23694 -11.21312 -11.17817 -11.00935 -11.00707 -10.94593 -10.59693 -10.43642 -10.15222 -9.99187 -9.89141 -9.55974 -9.35387 -9.25800 -9.05636 -8.69762 -8.54489 -7.03207 -5.82530 -3.22059 2.50507 2.74675 2.83214 3.29835 3.35275 3.38547 3.46998 4.16884 4.31830 4.33141 4.65712 4.78156 5.00336 5.01849 5.04599 5.09766 5.27573 5.30306 5.35948 5.52372 5.56213 5.61806 5.64618 5.66620 5.74463 5.80159 5.80761 5.83819 5.97801 5.99034 6.01987 6.07142 6.15780 6.22107 6.34062 6.40993 6.41710 6.53645 6.61802 6.67493 6.75186 6.87536 7.02224 7.10762 7.24409 7.39615 7.71324 7.84074 8.09146 8.14646 8.45083 8.99019 9.62574 10.43194 11.26335 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.003608 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.735896 B = 7758.470777 C = 9000.518379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.160 3.840 3 C -0.169 4.169 4 N -0.592 5.592 5 C 0.520 3.480 6 O -0.531 6.531 7 C -0.155 4.155 8 C -0.123 4.123 9 C 0.111 3.889 10 H 0.104 0.896 11 C 0.503 3.497 12 O -0.537 6.537 13 N -0.699 5.699 14 C 0.129 3.871 15 H 0.080 0.920 16 C -0.142 4.142 17 C 0.154 3.846 18 H 0.153 0.847 19 C -0.139 4.139 20 C -0.128 4.128 21 C 0.126 3.874 22 H 0.088 0.912 23 N -0.591 5.591 24 C -0.216 4.216 25 H 0.079 0.921 26 C -0.008 4.008 27 N -0.918 5.918 28 Si 0.914 3.086 29 H -0.281 1.281 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.404 0.596 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 13.021 -2.021 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 C -0.227 4.227 4 N -0.326 5.326 5 C 0.308 3.692 6 O -0.408 6.408 7 C -0.195 4.195 8 C -0.161 4.161 9 C 0.003 3.997 10 H 0.122 0.878 11 C 0.287 3.713 12 O -0.414 6.414 13 N -0.349 5.349 14 C 0.023 3.977 15 H 0.098 0.902 16 C -0.182 4.182 17 C 0.047 3.953 18 H 0.170 0.830 19 C -0.178 4.178 20 C -0.168 4.168 21 C 0.017 3.983 22 H 0.106 0.894 23 N -0.311 5.311 24 C -0.344 4.344 25 H 0.097 0.903 26 C -0.204 4.204 27 N -0.566 5.566 28 Si 0.744 3.256 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.239 0.761 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.072 13.563 -2.189 13.739 hybrid contribution 1.095 -0.651 0.715 1.461 sum 1.022 12.912 -1.474 13.036 Atomic orbital electron populations 1.22067 0.94611 1.03072 1.01858 1.20934 0.94933 0.91514 0.86751 1.22242 1.00886 0.96534 1.03000 1.48167 1.50528 1.27236 1.06645 1.20810 0.79692 0.85058 0.83637 1.90682 1.39640 1.29155 1.81356 1.22381 1.03000 0.95544 0.98595 1.22643 1.04968 0.97498 0.91030 1.21645 0.95666 0.85953 0.96468 0.87834 1.20507 0.83836 0.82844 0.84152 1.90676 1.27144 1.77164 1.46449 1.45989 1.34011 1.15323 1.39527 1.22677 0.96481 0.88586 0.89964 0.90215 1.23441 0.96398 0.98541 0.99832 1.23761 0.83816 0.94616 0.93104 0.83022 1.23050 0.96484 0.98727 0.99557 1.22869 0.98662 0.98306 0.96919 1.23167 0.95023 0.89991 0.90121 0.89438 1.46541 1.06226 1.40571 1.37810 1.19030 0.89679 1.15523 1.10140 0.90344 1.24696 0.96578 0.99263 0.99891 1.69465 1.16583 1.31787 1.38720 0.86020 0.80302 0.78787 0.80449 1.20594 1.21793 1.21823 0.92222 0.91349 0.92053 0.88574 0.92877 0.91631 0.91275 0.87787 0.87627 0.89116 0.87960 0.76145 0.92263 0.92901 0.92640 0.93341 0.93023 0.92437 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.03 37.16 0.34 -1.82 16 2 C 0.16 2.06 2.38 -67.93 -0.16 1.90 16 3 C -0.17 -1.89 9.20 37.16 0.34 -1.55 16 4 N -0.59 -7.53 2.59 -158.67 -0.41 -7.94 16 5 C 0.52 6.98 7.41 -10.86 -0.08 6.90 16 6 O -0.53 -8.76 15.12 5.56 0.08 -8.67 16 7 C -0.16 -1.51 6.86 -26.75 -0.18 -1.70 16 8 C -0.12 -1.20 6.60 -25.10 -0.17 -1.37 16 9 C 0.11 1.23 3.70 -68.16 -0.25 0.98 16 10 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 11 C 0.50 7.13 6.88 -10.99 -0.08 7.06 16 12 O -0.54 -9.14 12.53 5.55 0.07 -9.07 16 13 N -0.70 -10.22 5.01 -51.36 -0.26 -10.48 16 14 C 0.13 2.17 2.80 -65.40 -0.18 1.98 16 15 H 0.08 1.36 7.23 -51.93 -0.38 0.99 16 16 C -0.14 -2.68 6.23 -24.24 -0.15 -2.84 16 17 C 0.15 3.29 4.72 -62.80 -0.30 2.99 16 18 H 0.15 3.79 5.52 -51.93 -0.29 3.50 16 19 C -0.14 -2.61 6.44 -24.24 -0.16 -2.76 16 20 C -0.13 -2.17 6.44 -24.24 -0.16 -2.33 16 21 C 0.13 2.24 5.06 -62.79 -0.32 1.92 16 22 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 23 N -0.59 -12.98 2.98 -145.81 -0.44 -13.41 16 24 C -0.22 -5.27 10.59 -15.06 -0.16 -5.43 16 25 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 26 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 27 N -0.92 -24.54 10.46 55.49 0.58 -23.96 16 28 Si 0.91 20.33 29.55 -169.99 -5.02 15.31 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 31 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 34 H 0.06 0.90 6.80 -51.93 -0.35 0.55 16 35 H 0.10 1.30 6.49 -51.93 -0.34 0.96 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.89 6.77 -51.93 -0.35 0.54 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.40 5.61 8.63 -40.82 -0.35 5.26 16 44 H 0.06 1.21 7.98 -51.93 -0.41 0.80 16 45 H 0.05 0.96 7.82 -51.93 -0.41 0.55 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 48 H 0.05 0.77 7.82 -51.93 -0.41 0.37 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -29.59 384.84 -9.59 -39.18 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -8.24 Total: 9.60 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.76 Total: 3.64 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.52 Total: -55.79 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.15 Total: -17.74 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.59 -9.59 -39.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097706791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.297 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds