Wall clock time and date at job start Tue Mar 31 2020 19:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46813 * 2 1 4 4 N 1.46497 * 109.46943 * 119.99904 * 2 1 3 5 5 C 1.34413 * 124.35463 * 299.99759 * 4 2 1 6 6 O 1.21283 * 124.94031 * 359.62849 * 5 4 2 7 7 C 1.51281 * 110.11648 * 179.59595 * 5 4 2 8 8 C 1.54619 * 104.19775 * 343.74848 * 7 5 4 9 9 C 1.46768 * 124.34381 * 120.00561 * 4 2 1 10 10 H 1.09000 * 110.25007 * 78.01166 * 9 4 2 11 11 C 1.50696 * 110.24547 * 316.00741 * 9 4 2 12 12 O 1.21284 * 120.00062 * 2.50341 * 11 9 4 13 13 N 1.34777 * 120.00117 * 182.50001 * 11 9 4 14 14 C 1.46504 * 120.00164 * 180.02562 * 13 11 9 15 15 H 1.09000 * 110.55755 * 32.09916 * 14 13 11 16 16 C 1.54851 * 110.62468 * 269.02594 * 14 13 11 17 17 C 1.55839 * 103.44580 * 241.50916 * 16 14 13 18 18 H 1.09002 * 115.56312 * 158.81683 * 17 16 14 19 19 C 1.55846 * 105.06512 * 288.17881 * 17 16 14 20 20 C 1.54844 * 103.44573 * 71.82425 * 19 17 16 21 21 C 1.55840 * 103.44768 * 0.02562 * 20 19 17 22 22 H 1.08996 * 116.13264 * 159.15134 * 21 20 19 23 23 N 1.50241 * 101.05324 * 32.94131 * 17 16 14 24 24 C 1.36927 * 130.84302 * 126.04921 * 23 17 16 25 25 H 1.07996 * 120.00223 * 179.97438 * 24 23 17 26 26 C 1.38816 * 119.99908 * 359.97438 * 24 23 17 27 27 N 1.31613 * 119.99944 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 120.00150 * 180.02562 * 26 24 23 29 29 H 1.48505 * 109.47024 * 359.97438 * 28 26 24 30 30 H 1.48502 * 109.47327 * 119.99416 * 28 26 24 31 31 H 1.48501 * 109.47039 * 239.99652 * 28 26 24 32 32 H 1.09000 * 109.47716 * 59.99806 * 1 2 3 33 33 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46964 * 299.99995 * 1 2 3 35 35 H 1.08996 * 109.46760 * 240.00278 * 2 1 3 36 36 H 1.09005 * 109.47208 * 180.02562 * 3 2 1 37 37 H 1.09006 * 109.47673 * 300.00149 * 3 2 1 38 38 H 1.09004 * 109.47352 * 60.00242 * 3 2 1 39 39 H 1.09007 * 110.48265 * 225.06772 * 7 5 4 40 40 H 1.09005 * 110.48391 * 102.43228 * 7 5 4 41 41 H 1.08996 * 110.97085 * 266.68176 * 8 7 5 42 42 H 1.08999 * 110.96983 * 142.91439 * 8 7 5 43 43 H 0.97001 * 120.00238 * 0.02562 * 13 11 9 44 44 H 1.08999 * 110.62840 * 0.02562 * 16 14 13 45 45 H 1.09001 * 110.62759 * 123.02133 * 16 14 13 46 46 H 1.08996 * 110.62529 * 190.31511 * 19 17 16 47 47 H 1.08997 * 110.62429 * 313.17155 * 19 17 16 48 48 H 1.09001 * 110.62844 * 241.51031 * 20 19 17 49 49 H 1.09001 * 110.62755 * 118.49310 * 20 19 17 50 50 H 0.97002 * 120.00419 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7481 -0.3083 2.4561 6 8 1.0756 0.6539 2.7610 7 6 2.4040 -1.2534 3.4386 8 6 2.7610 -2.4953 2.5896 9 6 2.8656 -1.8887 1.1726 10 1 3.8982 -1.6163 0.9543 11 6 2.3556 -2.8681 0.1472 12 8 1.4002 -2.5812 -0.5428 13 7 2.9610 -4.0628 -0.0033 14 6 2.4655 -5.0147 -1.0007 15 1 2.0512 -4.4876 -1.8601 16 6 1.4103 -5.9599 -0.3754 17 6 2.0524 -7.3716 -0.5286 18 1 1.6690 -8.1383 0.1448 19 6 1.9686 -7.6917 -2.0515 20 6 3.0238 -6.7465 -2.6766 21 6 3.6019 -5.9845 -1.4463 22 1 4.5829 -5.5290 -1.5813 23 7 3.5109 -7.0419 -0.3834 24 6 4.4643 -7.5495 0.4582 25 1 5.4777 -7.1790 0.4123 26 6 4.1283 -8.5405 1.3703 27 7 2.8933 -8.9917 1.4266 28 14 5.4288 -9.2326 2.5190 29 1 6.7277 -8.5618 2.2576 30 1 5.0227 -8.9943 3.9274 31 1 5.5700 -10.6922 2.2847 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 1.7074 -1.5216 4.2330 40 1 3.3054 -0.8045 3.8559 41 1 1.9677 -3.2413 2.6369 42 1 3.7141 -2.9212 2.9029 43 1 3.7249 -4.2924 0.5487 44 1 1.2553 -5.7202 0.6765 45 1 0.4707 -5.9038 -0.9252 46 1 2.2271 -8.7337 -2.2396 47 1 0.9736 -7.4687 -2.4365 48 1 2.5529 -6.0519 -3.3724 49 1 3.8056 -7.3197 -3.1749 50 1 2.6583 -9.6839 2.0643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097706791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:29 Heat of formation + Delta-G solvation = -41.385433 kcal Electronic energy + Delta-G solvation = -31002.797756 eV Core-core repulsion = 27030.382509 eV Total energy + Delta-G solvation = -3972.415247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09440 -40.97163 -39.61477 -37.24509 -36.13934 -35.12287 -34.33725 -31.02330 -30.93230 -30.67396 -29.90974 -28.35258 -28.10274 -26.06145 -23.95547 -23.36495 -22.80369 -21.50159 -21.24127 -20.35656 -19.75283 -18.80523 -18.39764 -17.97048 -17.10090 -16.76840 -16.70501 -16.15539 -15.96591 -15.64338 -15.40767 -15.04427 -14.90158 -14.78197 -14.48823 -14.40072 -13.86135 -13.74816 -13.60515 -13.58860 -13.04245 -13.00743 -12.86397 -12.80572 -12.76627 -12.72264 -12.63487 -12.20274 -12.06556 -12.05640 -12.03279 -11.90766 -11.83680 -11.66263 -11.17053 -10.92973 -10.91263 -10.75889 -10.53966 -9.90419 -9.69510 -8.82306 -7.70816 -5.10503 1.48258 1.52818 1.55352 1.63172 1.64282 1.86410 2.36380 2.54933 3.27871 3.43016 3.44259 3.50111 3.73260 3.95317 4.04831 4.05285 4.09810 4.13763 4.16724 4.31285 4.35414 4.48673 4.51877 4.53786 4.66103 4.69751 4.72051 4.75004 4.77792 4.87003 4.88615 4.93327 4.94419 4.97648 5.03231 5.13253 5.18154 5.20928 5.22351 5.32706 5.41758 5.57412 5.61942 5.64988 5.75391 5.94210 6.13025 6.31544 6.67924 7.10651 7.13175 7.31154 7.78323 8.63525 9.36634 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.003608 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.735896 B = 7758.470777 C = 9000.518379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 C -0.159 4.159 4 N -0.595 5.595 5 C 0.509 3.491 6 O -0.570 6.570 7 C -0.145 4.145 8 C -0.117 4.117 9 C 0.114 3.886 10 H 0.140 0.860 11 C 0.503 3.497 12 O -0.566 6.566 13 N -0.695 5.695 14 C 0.143 3.857 15 H 0.086 0.914 16 C -0.131 4.131 17 C 0.139 3.861 18 H 0.113 0.887 19 C -0.134 4.134 20 C -0.120 4.120 21 C 0.130 3.870 22 H 0.107 0.893 23 N -0.609 5.609 24 C -0.208 4.208 25 H 0.089 0.911 26 C -0.066 4.066 27 N -0.949 5.949 28 Si 0.970 3.030 29 H -0.263 1.263 30 H -0.298 1.298 31 H -0.306 1.306 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.068 0.932 42 H 0.132 0.868 43 H 0.410 0.590 44 H 0.036 0.964 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 14.609 -2.749 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 C -0.217 4.217 4 N -0.328 5.328 5 C 0.298 3.702 6 O -0.450 6.450 7 C -0.185 4.185 8 C -0.155 4.155 9 C 0.007 3.993 10 H 0.157 0.843 11 C 0.289 3.711 12 O -0.445 6.445 13 N -0.345 5.345 14 C 0.037 3.963 15 H 0.104 0.896 16 C -0.172 4.172 17 C 0.033 3.967 18 H 0.131 0.869 19 C -0.173 4.173 20 C -0.160 4.160 21 C 0.022 3.978 22 H 0.125 0.875 23 N -0.330 5.330 24 C -0.337 4.337 25 H 0.107 0.893 26 C -0.258 4.258 27 N -0.599 5.599 28 Si 0.800 3.200 29 H -0.187 1.187 30 H -0.226 1.226 31 H -0.234 1.234 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.125 0.875 40 H 0.153 0.847 41 H 0.087 0.913 42 H 0.151 0.849 43 H 0.246 0.754 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.145 15.170 -2.943 15.601 hybrid contribution 0.346 -1.138 0.872 1.474 sum 2.491 14.033 -2.072 14.402 Atomic orbital electron populations 1.21980 0.95675 1.01343 1.01841 1.20960 0.94132 0.92593 0.86841 1.22147 1.01556 0.95156 1.02798 1.48313 1.50480 1.27478 1.06555 1.21465 0.79245 0.85039 0.84432 1.90660 1.41345 1.30982 1.81979 1.22409 1.03928 0.94460 0.97657 1.22673 1.05784 0.96933 0.90079 1.21829 0.96736 0.84599 0.96117 0.84264 1.21023 0.83116 0.82844 0.84127 1.90675 1.28404 1.77717 1.47730 1.45880 1.34203 1.15153 1.39276 1.22390 0.95261 0.88340 0.90354 0.89628 1.23282 0.97353 0.97788 0.98763 1.23569 0.84126 0.94960 0.94083 0.86921 1.22958 0.98307 0.98180 0.97848 1.22834 0.98113 0.98177 0.96874 1.23367 0.96284 0.89079 0.89025 0.87518 1.46711 1.06039 1.41645 1.38586 1.19392 0.90497 1.14395 1.09401 0.89286 1.25371 0.97969 1.00529 1.01935 1.69725 1.18187 1.32486 1.39479 0.85117 0.79198 0.77240 0.78396 1.18732 1.22578 1.23395 0.90601 0.93777 0.93679 0.88855 0.91630 0.90067 0.93190 0.87454 0.84657 0.91308 0.84940 0.75445 0.94513 0.92280 0.94618 0.91498 0.90180 0.92316 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.03 71.98 0.65 -3.45 16 2 C 0.16 3.84 2.38 44.99 0.11 3.95 16 3 C -0.16 -3.29 9.20 71.98 0.66 -2.63 16 4 N -0.60 -14.20 2.59 -774.52 -2.01 -16.21 16 5 C 0.51 13.04 7.41 87.90 0.65 13.70 16 6 O -0.57 -18.74 15.12 -3.04 -0.05 -18.79 16 7 C -0.14 -2.46 6.86 30.58 0.21 -2.25 16 8 C -0.12 -1.96 6.60 31.65 0.21 -1.75 16 9 C 0.11 2.23 3.70 44.70 0.17 2.40 16 10 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 11 C 0.50 13.27 6.88 87.66 0.60 13.87 16 12 O -0.57 -18.57 12.53 -3.04 -0.04 -18.61 16 13 N -0.70 -18.73 5.01 -434.81 -2.18 -20.91 16 14 C 0.14 4.51 2.80 46.63 0.13 4.64 16 15 H 0.09 2.67 7.23 -2.39 -0.02 2.66 16 16 C -0.13 -4.93 6.23 32.21 0.20 -4.73 16 17 C 0.14 6.01 4.72 46.23 0.22 6.22 16 18 H 0.11 5.88 5.52 -2.39 -0.01 5.86 16 19 C -0.13 -4.91 6.44 32.21 0.21 -4.70 16 20 C -0.12 -3.77 6.44 32.21 0.21 -3.56 16 21 C 0.13 4.27 5.06 46.25 0.23 4.51 16 22 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 23 N -0.61 -26.16 2.98 -615.23 -1.84 -27.99 16 24 C -0.21 -9.95 10.59 84.04 0.89 -9.06 16 25 H 0.09 3.99 7.83 -2.91 -0.02 3.96 16 26 C -0.07 -3.34 5.50 84.86 0.47 -2.88 16 27 N -0.95 -52.31 10.46 21.65 0.23 -52.08 16 28 Si 0.97 41.89 29.55 68.60 2.03 43.92 16 29 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 30 H -0.30 -13.08 7.11 99.48 0.71 -12.38 16 31 H -0.31 -13.81 7.11 99.48 0.71 -13.10 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.39 7.10 -2.39 -0.02 1.38 16 34 H 0.04 1.36 6.80 -2.39 -0.02 1.34 16 35 H 0.09 2.36 6.49 -2.39 -0.02 2.35 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.25 6.77 -2.39 -0.02 1.23 16 39 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.14 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.07 1.49 7.90 -2.39 -0.02 1.47 16 42 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.41 10.22 8.63 -92.71 -0.80 9.42 16 44 H 0.04 1.51 7.98 -2.39 -0.02 1.49 16 45 H 0.06 2.10 7.82 -2.39 -0.02 2.08 16 46 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 2.17 7.82 -2.39 -0.02 2.15 16 48 H 0.08 2.09 7.82 -2.39 -0.02 2.07 16 49 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.24 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -66.52 384.84 2.10 -64.41 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.14 Total: 31.99 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 5.81 Total: 14.27 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -5.79 Total: -117.19 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.08 Total: -37.40 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -66.52 2.10 -64.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097706791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.027 kcal (2) G-P(sol) polarization free energy of solvation -66.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds