Wall clock time and date at job start Tue Mar 31 2020 19:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34797 * 269.72831 * 4 3 2 6 6 C 1.54307 * 105.55887 * 196.88352 * 5 4 3 7 7 H 1.09008 * 110.74305 * 92.99914 * 6 5 4 8 8 C 1.50702 * 111.15090 * 216.68913 * 6 5 4 9 9 O 1.21282 * 119.99604 * 354.03796 * 8 6 5 10 10 N 1.34773 * 120.00110 * 174.03545 * 8 6 5 11 11 C 1.46498 * 120.00132 * 180.02562 * 10 8 6 12 12 H 1.09007 * 110.55554 * 36.44469 * 11 10 8 13 13 C 1.54852 * 110.62505 * 273.54551 * 11 10 8 14 14 C 1.55841 * 103.44352 * 241.50847 * 13 11 10 15 15 H 1.08998 * 115.56230 * 158.81710 * 14 13 11 16 16 C 1.55848 * 105.06506 * 287.42048 * 14 13 11 17 17 C 1.54855 * 103.44047 * 71.82750 * 16 14 13 18 18 C 1.55845 * 110.62695 * 159.51899 * 11 10 8 19 19 H 1.08997 * 115.56057 * 318.92078 * 18 11 10 20 20 N 1.50232 * 101.05279 * 32.93727 * 14 13 11 21 21 C 1.36942 * 130.83884 * 126.02766 * 20 14 13 22 22 H 1.08001 * 120.00058 * 180.02562 * 21 20 14 23 23 C 1.38817 * 119.99896 * 0.02995 * 21 20 14 24 24 N 1.31617 * 119.99657 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99961 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47016 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47407 * 119.99821 * 25 23 21 28 28 H 1.48508 * 109.46875 * 240.00186 * 25 23 21 29 29 C 1.54624 * 101.84730 * 334.93738 * 6 5 4 30 30 C 1.34421 * 124.34606 * 90.02582 * 4 3 2 31 31 O 1.21285 * 124.94348 * 359.61101 * 30 4 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 35 35 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 36 36 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 37 37 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 38 38 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 39 39 H 1.08996 * 110.24375 * 316.01223 * 5 4 3 40 40 H 1.08994 * 110.25083 * 78.01560 * 5 4 3 41 41 H 0.97008 * 119.99848 * 359.97438 * 10 8 6 42 42 H 1.08996 * 110.63010 * 359.97438 * 13 11 10 43 43 H 1.09003 * 110.62379 * 122.86370 * 13 11 10 44 44 H 1.08997 * 110.63114 * 190.31302 * 16 14 13 45 45 H 1.08998 * 110.62947 * 313.34204 * 16 14 13 46 46 H 1.09008 * 110.62574 * 118.49117 * 17 16 14 47 47 H 1.09006 * 110.62448 * 241.34796 * 17 16 14 48 48 H 0.96999 * 119.99514 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.48409 * 265.90634 * 29 6 5 50 50 H 1.08999 * 110.49014 * 143.25630 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3326 1.4483 1.2126 6 6 5.7407 1.8777 0.7503 7 1 5.8666 2.9561 0.8467 8 6 6.8117 1.1421 1.5140 9 8 6.5081 0.4162 2.4369 10 7 8.1066 1.2910 1.1713 11 6 9.1476 0.5755 1.9133 12 1 8.7977 -0.4149 2.2049 13 6 9.5865 1.3871 3.1569 14 6 11.0971 1.6650 2.8936 15 1 11.5231 2.5057 3.4411 16 6 11.8051 0.2936 3.1103 17 6 11.3708 -0.5347 1.8760 18 6 10.4528 0.4736 1.0679 19 1 10.3118 0.2524 0.0099 20 7 11.1114 1.7835 1.3960 21 6 11.5802 2.7790 0.5808 22 1 11.4996 2.6815 -0.4917 23 6 12.1591 3.9134 1.1332 24 7 12.2578 4.0318 2.4403 25 14 12.7992 5.2710 0.0213 26 1 12.5722 4.8969 -1.3978 27 1 12.0816 6.5360 0.3210 28 1 14.2534 5.4591 0.2566 29 6 5.7301 1.4526 -0.7363 30 6 4.2639 1.4427 -1.1089 31 8 3.8355 1.4363 -2.2435 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8932 -0.5139 0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9563 -0.8900 39 1 3.9376 2.1620 1.9355 40 1 4.3699 0.4501 1.6488 41 1 8.3492 1.8713 0.4328 42 1 9.0300 2.3220 3.2214 43 1 9.4544 0.7992 4.0653 44 1 12.8877 0.4187 3.1271 45 1 11.4575 -0.1769 4.0300 46 1 12.2382 -0.8203 1.2807 47 1 10.8104 -1.4175 2.1838 48 1 12.6619 4.8246 2.8262 49 1 6.1597 0.4575 -0.8516 50 1 6.2732 2.1764 -1.3440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097951351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:08 Heat of formation + Delta-G solvation = -33.460898 kcal Electronic energy + Delta-G solvation = -29897.938656 eV Core-core repulsion = 25925.867043 eV Total energy + Delta-G solvation = -3972.071613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93350 -39.61173 -38.36890 -36.49498 -34.99640 -33.90895 -32.59373 -31.68624 -29.20292 -28.83718 -28.01454 -27.68471 -26.43360 -24.32150 -23.43707 -22.04976 -21.21442 -19.93115 -19.79656 -19.48844 -18.71126 -17.49428 -17.07635 -16.91866 -16.06306 -15.87407 -15.35352 -14.98770 -14.85387 -14.62865 -14.06756 -14.01687 -13.96717 -13.76111 -13.57481 -13.19364 -12.98163 -12.83455 -12.44501 -12.11362 -12.02343 -11.93339 -11.73363 -11.60419 -11.48089 -11.26545 -11.16620 -11.01028 -10.99264 -10.95597 -10.57170 -10.40558 -10.14232 -10.11303 -9.95300 -9.70978 -9.30391 -9.19815 -9.03017 -8.90796 -8.55231 -7.01307 -5.80567 -3.20136 2.41499 2.70540 2.79150 3.32180 3.38047 3.40524 3.42439 4.10320 4.20430 4.35456 4.63092 4.66111 4.70490 4.77588 4.95477 5.07066 5.11979 5.15074 5.26677 5.29619 5.31337 5.40508 5.47947 5.55686 5.58281 5.65571 5.69889 5.76285 5.77357 5.79491 5.93675 6.00372 6.04216 6.09619 6.24719 6.32886 6.36600 6.44380 6.54679 6.68623 6.77899 6.89113 6.89442 7.03510 7.27099 7.42046 7.73445 7.86284 7.98800 8.11370 8.46257 9.01227 9.64564 10.45102 11.28198 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.002842 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.652425 B = 9849.258039 C =10880.964851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.126 3.874 4 N -0.620 5.620 5 C 0.119 3.881 6 C -0.125 4.125 7 H 0.118 0.882 8 C 0.522 3.478 9 O -0.547 6.547 10 N -0.699 5.699 11 C 0.128 3.872 12 H 0.078 0.922 13 C -0.142 4.142 14 C 0.154 3.846 15 H 0.152 0.848 16 C -0.140 4.140 17 C -0.129 4.129 18 C 0.125 3.875 19 H 0.090 0.910 20 N -0.588 5.588 21 C -0.216 4.216 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.918 5.918 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.145 4.145 30 C 0.521 3.479 31 O -0.532 6.532 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.404 0.596 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.109 0.891 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.060 -6.212 -1.178 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.004 4.004 6 C -0.147 4.147 7 H 0.136 0.864 8 C 0.307 3.693 9 O -0.426 6.426 10 N -0.348 5.348 11 C 0.022 3.978 12 H 0.096 0.904 13 C -0.182 4.182 14 C 0.047 3.953 15 H 0.169 0.831 16 C -0.179 4.179 17 C -0.169 4.169 18 C 0.016 3.984 19 H 0.108 0.892 20 N -0.309 5.309 21 C -0.343 4.343 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.186 4.186 30 C 0.309 3.691 31 O -0.409 6.409 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.239 0.761 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.128 0.872 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.406 -6.418 -1.191 17.657 hybrid contribution 0.533 0.987 -0.746 1.347 sum -15.873 -5.431 -1.937 16.887 Atomic orbital electron populations 1.21688 0.94981 1.02070 1.01933 1.21922 0.96249 0.97121 1.02856 1.21449 0.77712 0.97184 1.03179 1.48357 1.06289 1.73383 1.07358 1.21936 0.87996 1.03800 0.86683 1.22223 0.94609 1.02727 0.95124 0.86398 1.19917 0.83540 0.81850 0.84010 1.90680 1.82242 1.39482 1.30166 1.46005 1.05277 1.47713 1.35801 1.22677 0.87267 0.94497 0.93365 0.90365 1.23447 1.00578 0.98773 0.95410 1.23716 0.90430 0.95631 0.85504 0.83131 1.23046 1.00524 0.98649 0.95705 1.23331 0.99101 0.96748 0.97759 1.23636 0.90472 0.88404 0.95853 0.89238 1.46486 1.67305 1.15128 1.01942 1.19045 1.31706 0.94648 0.88934 0.90287 1.24711 1.01517 0.98422 0.95873 1.69477 1.49672 1.28638 1.08794 0.86002 0.78371 0.81760 0.79334 1.20555 1.21818 1.21807 1.22357 0.95333 1.05545 0.95353 1.20804 0.89007 0.74943 0.84366 1.90724 1.78625 1.50508 1.21060 0.92376 0.92523 0.92514 0.91559 0.91514 0.90247 0.90006 0.89781 0.89114 0.76138 0.92265 0.92815 0.92641 0.93258 0.92529 0.92953 0.93557 0.87240 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.61 16 2 C -0.14 -1.19 6.26 -26.74 -0.17 -1.36 16 3 C 0.13 1.11 5.93 -4.04 -0.02 1.09 16 4 N -0.62 -6.54 2.93 -172.52 -0.51 -7.05 16 5 C 0.12 1.19 6.68 -3.22 -0.02 1.17 16 6 C -0.12 -1.34 3.52 -90.23 -0.32 -1.65 16 7 H 0.12 1.12 8.14 -51.92 -0.42 0.70 16 8 C 0.52 7.42 7.07 -10.99 -0.08 7.34 16 9 O -0.55 -9.40 15.30 5.56 0.08 -9.31 16 10 N -0.70 -10.56 5.05 -51.40 -0.26 -10.81 16 11 C 0.13 2.19 2.72 -65.44 -0.18 2.02 16 12 H 0.08 1.35 7.38 -51.93 -0.38 0.96 16 13 C -0.14 -2.73 6.22 -24.24 -0.15 -2.88 16 14 C 0.15 3.34 4.67 -62.80 -0.29 3.05 16 15 H 0.15 3.81 5.52 -51.93 -0.29 3.52 16 16 C -0.14 -2.65 6.45 -24.23 -0.16 -2.81 16 17 C -0.13 -2.23 6.54 -22.71 -0.15 -2.38 16 18 C 0.13 2.28 5.16 -61.28 -0.32 1.96 16 19 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 20 N -0.59 -13.21 3.00 -144.20 -0.43 -13.64 16 21 C -0.22 -5.39 10.59 -15.05 -0.16 -5.55 16 22 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -24.97 10.47 55.49 0.58 -24.39 16 25 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 C -0.15 -1.53 6.37 -26.74 -0.17 -1.70 16 30 C 0.52 6.59 8.02 -10.86 -0.09 6.50 16 31 O -0.53 -8.60 17.60 5.55 0.10 -8.50 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.02 7.05 -51.93 -0.37 0.66 16 41 H 0.40 5.86 8.62 -40.82 -0.35 5.51 16 42 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 43 H 0.05 0.97 7.81 -51.93 -0.41 0.57 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 46 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 47 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 48 H 0.25 6.76 8.31 -40.82 -0.34 6.43 16 49 H 0.11 1.14 7.89 -51.93 -0.41 0.73 16 50 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -30.53 396.51 -9.94 -40.47 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.46 Total: 7.60 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.00 Total: 3.85 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.62 Total: -55.89 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.18 Total: -17.81 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.53 -9.94 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097951351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.010 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds