Wall clock time and date at job start Tue Mar 31 2020 19:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34797 * 269.72831 * 4 3 2 6 6 C 1.54307 * 105.55887 * 196.88352 * 5 4 3 7 7 H 1.09008 * 110.74305 * 92.99914 * 6 5 4 8 8 C 1.50702 * 111.15090 * 216.68913 * 6 5 4 9 9 O 1.21282 * 119.99604 * 354.03796 * 8 6 5 10 10 N 1.34773 * 120.00110 * 174.03545 * 8 6 5 11 11 C 1.46498 * 120.00132 * 180.02562 * 10 8 6 12 12 H 1.09007 * 110.55554 * 36.44469 * 11 10 8 13 13 C 1.54852 * 110.62505 * 273.54551 * 11 10 8 14 14 C 1.55841 * 103.44352 * 241.50847 * 13 11 10 15 15 H 1.08998 * 115.56230 * 158.81710 * 14 13 11 16 16 C 1.55848 * 105.06506 * 287.42048 * 14 13 11 17 17 C 1.54855 * 103.44047 * 71.82750 * 16 14 13 18 18 C 1.55845 * 110.62695 * 159.51899 * 11 10 8 19 19 H 1.08997 * 115.56057 * 318.92078 * 18 11 10 20 20 N 1.50232 * 101.05279 * 32.93727 * 14 13 11 21 21 C 1.36942 * 130.83884 * 126.02766 * 20 14 13 22 22 H 1.08001 * 120.00058 * 180.02562 * 21 20 14 23 23 C 1.38817 * 119.99896 * 0.02995 * 21 20 14 24 24 N 1.31617 * 119.99657 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99961 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47016 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47407 * 119.99821 * 25 23 21 28 28 H 1.48508 * 109.46875 * 240.00186 * 25 23 21 29 29 C 1.54624 * 101.84730 * 334.93738 * 6 5 4 30 30 C 1.34421 * 124.34606 * 90.02582 * 4 3 2 31 31 O 1.21285 * 124.94348 * 359.61101 * 30 4 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 35 35 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 36 36 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 37 37 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 38 38 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 39 39 H 1.08996 * 110.24375 * 316.01223 * 5 4 3 40 40 H 1.08994 * 110.25083 * 78.01560 * 5 4 3 41 41 H 0.97008 * 119.99848 * 359.97438 * 10 8 6 42 42 H 1.08996 * 110.63010 * 359.97438 * 13 11 10 43 43 H 1.09003 * 110.62379 * 122.86370 * 13 11 10 44 44 H 1.08997 * 110.63114 * 190.31302 * 16 14 13 45 45 H 1.08998 * 110.62947 * 313.34204 * 16 14 13 46 46 H 1.09008 * 110.62574 * 118.49117 * 17 16 14 47 47 H 1.09006 * 110.62448 * 241.34796 * 17 16 14 48 48 H 0.96999 * 119.99514 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.48409 * 265.90634 * 29 6 5 50 50 H 1.08999 * 110.49014 * 143.25630 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3326 1.4483 1.2126 6 6 5.7407 1.8777 0.7503 7 1 5.8666 2.9561 0.8467 8 6 6.8117 1.1421 1.5140 9 8 6.5081 0.4162 2.4369 10 7 8.1066 1.2910 1.1713 11 6 9.1476 0.5755 1.9133 12 1 8.7977 -0.4149 2.2049 13 6 9.5865 1.3871 3.1569 14 6 11.0971 1.6650 2.8936 15 1 11.5231 2.5057 3.4411 16 6 11.8051 0.2936 3.1103 17 6 11.3708 -0.5347 1.8760 18 6 10.4528 0.4736 1.0679 19 1 10.3118 0.2524 0.0099 20 7 11.1114 1.7835 1.3960 21 6 11.5802 2.7790 0.5808 22 1 11.4996 2.6815 -0.4917 23 6 12.1591 3.9134 1.1332 24 7 12.2578 4.0318 2.4403 25 14 12.7992 5.2710 0.0213 26 1 12.5722 4.8969 -1.3978 27 1 12.0816 6.5360 0.3210 28 1 14.2534 5.4591 0.2566 29 6 5.7301 1.4526 -0.7363 30 6 4.2639 1.4427 -1.1089 31 8 3.8355 1.4363 -2.2435 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8932 -0.5139 0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9563 -0.8900 39 1 3.9376 2.1620 1.9355 40 1 4.3699 0.4501 1.6488 41 1 8.3492 1.8713 0.4328 42 1 9.0300 2.3220 3.2214 43 1 9.4544 0.7992 4.0653 44 1 12.8877 0.4187 3.1271 45 1 11.4575 -0.1769 4.0300 46 1 12.2382 -0.8203 1.2807 47 1 10.8104 -1.4175 2.1838 48 1 12.6619 4.8246 2.8262 49 1 6.1597 0.4575 -0.8516 50 1 6.2732 2.1764 -1.3440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097951351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:07 Heat of formation + Delta-G solvation = -51.468126 kcal Electronic energy + Delta-G solvation = -29898.719508 eV Core-core repulsion = 25925.867043 eV Total energy + Delta-G solvation = -3972.852465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92984 -40.93830 -39.69598 -37.48984 -35.77256 -35.26770 -34.36552 -32.52714 -30.96374 -30.28776 -29.33304 -28.70234 -27.22097 -26.10006 -24.48033 -22.74596 -22.52161 -21.50539 -20.98561 -20.48228 -20.19666 -18.79394 -18.53271 -17.85073 -17.20304 -16.96976 -16.72573 -16.36345 -15.98730 -15.67303 -15.50393 -15.32594 -14.99033 -14.80125 -14.63767 -14.34158 -14.12241 -13.77561 -13.63382 -13.60796 -13.08625 -12.88465 -12.85104 -12.76222 -12.75142 -12.66464 -12.51591 -12.40970 -12.20859 -12.05166 -11.90395 -11.83660 -11.67656 -11.65524 -11.26171 -11.01812 -10.92677 -10.87158 -10.56704 -9.90793 -9.76709 -8.83703 -7.73112 -5.12602 1.44691 1.50382 1.52669 1.60460 1.63068 1.88416 2.31369 2.52651 3.19039 3.32983 3.40669 3.49755 3.76196 3.85162 3.99144 4.02679 4.04015 4.13062 4.21973 4.26960 4.32889 4.48870 4.50202 4.52743 4.53451 4.61216 4.64851 4.68385 4.75125 4.79256 4.86021 4.86930 4.94145 4.97002 5.12769 5.13699 5.16439 5.21677 5.23620 5.31864 5.42092 5.54403 5.56141 5.64171 5.76278 5.93664 6.01005 6.31290 6.66937 7.04584 7.09481 7.29226 7.76180 8.61762 9.34081 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.002842 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.652425 B = 9849.258039 C =10880.964851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.614 5.614 5 C 0.122 3.878 6 C -0.114 4.114 7 H 0.136 0.864 8 C 0.526 3.474 9 O -0.574 6.574 10 N -0.700 5.700 11 C 0.141 3.859 12 H 0.088 0.912 13 C -0.131 4.131 14 C 0.139 3.861 15 H 0.112 0.888 16 C -0.134 4.134 17 C -0.121 4.121 18 C 0.126 3.874 19 H 0.107 0.893 20 N -0.607 5.607 21 C -0.209 4.209 22 H 0.087 0.913 23 C -0.067 4.067 24 N -0.947 5.947 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.303 1.303 29 C -0.138 4.138 30 C 0.514 3.486 31 O -0.574 6.574 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.408 0.592 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.244 0.756 49 H 0.112 0.888 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 -7.138 -1.570 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.346 5.346 5 C -0.001 4.001 6 C -0.136 4.136 7 H 0.154 0.846 8 C 0.313 3.687 9 O -0.455 6.455 10 N -0.349 5.349 11 C 0.034 3.966 12 H 0.105 0.895 13 C -0.172 4.172 14 C 0.032 3.968 15 H 0.130 0.870 16 C -0.174 4.174 17 C -0.161 4.161 18 C 0.019 3.981 19 H 0.124 0.876 20 N -0.328 5.328 21 C -0.338 4.338 22 H 0.105 0.895 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.801 3.199 26 H -0.190 1.190 27 H -0.226 1.226 28 H -0.231 1.231 29 C -0.178 4.178 30 C 0.303 3.697 31 O -0.455 6.455 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.243 0.757 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.130 0.870 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.872 -7.374 -1.582 19.398 hybrid contribution 0.943 1.209 -0.571 1.636 sum -16.929 -6.166 -2.153 18.145 Atomic orbital electron populations 1.21666 0.93458 1.02553 1.02618 1.21864 0.97560 0.96562 1.01701 1.21648 0.76703 0.97637 1.04064 1.48469 1.07085 1.72081 1.07002 1.21963 0.87589 1.03911 0.86607 1.22154 0.93667 1.03175 0.94573 0.84597 1.20360 0.83590 0.81222 0.83573 1.90673 1.82602 1.40696 1.31497 1.45962 1.05386 1.47761 1.35755 1.22421 0.87341 0.94578 0.92211 0.89451 1.23296 0.98476 0.98274 0.97140 1.23543 0.92199 0.95826 0.85187 0.87020 1.22955 0.99019 0.97583 0.97795 1.23291 0.99204 0.97090 0.96488 1.23854 0.90556 0.86527 0.97178 0.87553 1.46655 1.67694 1.16280 1.02210 1.19383 1.29876 0.94883 0.89653 0.89526 1.25385 1.03076 1.00651 0.96839 1.69730 1.51253 1.28665 1.10101 0.85107 0.76800 0.79307 0.78686 1.19024 1.22608 1.23059 1.22333 0.94172 1.06117 0.95226 1.21127 0.89990 0.74435 0.84145 1.90701 1.79409 1.52678 1.22666 0.92037 0.91091 0.92559 0.93884 0.91422 0.87588 0.90847 0.87604 0.90057 0.75666 0.94496 0.91719 0.94660 0.91119 0.92535 0.89919 0.94629 0.87009 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.14 -2.15 6.26 30.59 0.19 -1.96 16 3 C 0.12 1.91 5.93 86.38 0.51 2.42 16 4 N -0.61 -11.89 2.93 -818.33 -2.40 -14.29 16 5 C 0.12 2.15 6.68 86.77 0.58 2.73 16 6 C -0.11 -2.16 3.52 -10.54 -0.04 -2.20 16 7 H 0.14 2.17 8.14 -2.38 -0.02 2.15 16 8 C 0.53 13.77 7.07 87.66 0.62 14.39 16 9 O -0.57 -18.53 15.30 -3.03 -0.05 -18.57 16 10 N -0.70 -19.63 5.05 -434.91 -2.20 -21.82 16 11 C 0.14 4.52 2.72 46.61 0.13 4.65 16 12 H 0.09 2.72 7.38 -2.38 -0.02 2.70 16 13 C -0.13 -4.94 6.22 32.21 0.20 -4.74 16 14 C 0.14 6.06 4.67 46.23 0.22 6.28 16 15 H 0.11 5.86 5.52 -2.39 -0.01 5.85 16 16 C -0.13 -4.95 6.45 32.21 0.21 -4.74 16 17 C -0.12 -3.84 6.54 33.20 0.22 -3.62 16 18 C 0.13 4.29 5.16 47.22 0.24 4.54 16 19 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 20 N -0.61 -26.84 3.00 -610.12 -1.83 -28.67 16 21 C -0.21 -10.35 10.59 84.03 0.89 -9.46 16 22 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.07 -3.51 5.50 84.86 0.47 -3.05 16 24 N -0.95 -53.13 10.47 21.65 0.23 -52.90 16 25 Si 0.97 43.25 29.55 68.60 2.03 45.28 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 29 C -0.14 -2.64 6.37 30.59 0.19 -2.44 16 30 C 0.51 12.41 8.02 87.90 0.71 13.12 16 31 O -0.57 -18.42 17.60 -3.04 -0.05 -18.47 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.32 7.93 -2.39 -0.02 1.30 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.66 7.05 -2.39 -0.02 1.64 16 41 H 0.41 10.95 8.62 -92.70 -0.80 10.15 16 42 H 0.04 1.52 7.98 -2.39 -0.02 1.51 16 43 H 0.06 2.25 7.81 -2.39 -0.02 2.23 16 44 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 2.27 7.81 -2.39 -0.02 2.25 16 46 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.08 2.16 7.86 -2.38 -0.02 2.14 16 48 H 0.24 13.54 8.31 -92.71 -0.77 12.77 16 49 H 0.11 2.11 7.89 -2.39 -0.02 2.10 16 50 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -67.16 396.51 1.91 -65.25 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.13 Total: 29.23 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 6.05 Total: 14.97 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -6.20 Total: -117.68 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.10 Total: -37.04 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.16 1.91 -65.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097951351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.783 kcal (2) G-P(sol) polarization free energy of solvation -67.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds