Wall clock time and date at job start Tue Mar 31 2020 18:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 120.00206 * 2 1 4 4 H 1.09004 * 109.46555 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47390 * 240.00562 * 3 2 1 6 6 C 1.53000 * 109.47060 * 64.99953 * 5 3 2 7 7 C 1.52997 * 109.47056 * 119.99970 * 3 2 1 8 8 C 1.50691 * 109.47514 * 295.00567 * 7 3 2 9 9 O 1.21290 * 120.00138 * 359.97438 * 8 7 3 10 10 N 1.34780 * 120.00607 * 179.97438 * 8 7 3 11 11 C 1.46493 * 120.00471 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.85966 * 322.66654 * 11 10 8 13 13 C 1.54631 * 110.96925 * 86.45188 * 11 10 8 14 14 C 1.51284 * 104.19461 * 142.91355 * 13 11 10 15 15 O 1.21281 * 124.94130 * 163.71443 * 14 13 11 16 16 N 1.34419 * 110.11565 * 343.75390 * 14 13 11 17 17 C 1.46505 * 124.34645 * 179.57304 * 16 14 13 18 18 C 1.53941 * 113.74473 * 36.64398 * 17 16 14 19 19 N 1.47583 * 86.11726 * 222.05001 * 18 17 16 20 20 C 1.36936 * 134.49381 * 204.64178 * 19 18 17 21 21 H 1.07998 * 120.00212 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99855 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00148 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00134 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47238 * 59.99716 * 24 22 20 26 26 H 1.48499 * 109.47373 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47027 * 299.99513 * 24 22 20 28 28 C 1.47586 * 91.01431 * 24.64048 * 19 18 17 29 29 C 1.46763 * 111.30166 * 359.58497 * 16 14 13 30 30 H 1.08002 * 119.99911 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00371 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.00423 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47153 * 304.99634 * 5 3 2 34 34 H 1.09001 * 109.46832 * 184.99825 * 5 3 2 35 35 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 38 38 H 1.09003 * 109.46810 * 55.00430 * 7 3 2 39 39 H 1.08998 * 109.47247 * 175.00299 * 7 3 2 40 40 H 0.97002 * 119.99149 * 359.97438 * 10 8 7 41 41 H 1.08992 * 110.48883 * 261.59308 * 13 11 10 42 42 H 1.09002 * 110.48406 * 24.24463 * 13 11 10 43 43 H 1.09004 * 112.94429 * 168.38297 * 17 16 14 44 44 H 1.08994 * 113.76859 * 336.34905 * 18 17 16 45 45 H 1.08997 * 113.76979 * 107.74980 * 18 17 16 46 46 H 0.96994 * 119.99926 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.76470 * 221.05717 * 28 19 18 48 48 H 1.08994 * 113.76481 * 89.66126 * 28 19 18 49 49 H 1.08996 * 110.24619 * 258.01789 * 29 16 14 50 50 H 1.09001 * 110.24222 * 136.01650 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 6 2.0562 1.4309 -2.4953 7 6 2.9431 1.3861 1.2492 8 6 2.0698 1.4299 2.4766 9 8 0.8626 1.3998 2.3633 10 7 2.6302 1.5025 3.7002 11 6 1.7812 1.5456 4.8933 12 1 0.8843 2.1372 4.7102 13 6 1.4163 0.1188 5.3646 14 6 1.4287 0.2124 6.8745 15 8 0.9299 -0.5994 7.6249 16 7 2.0723 1.3266 7.2634 17 6 2.2588 1.7288 8.6598 18 6 2.5042 0.5486 9.6172 19 7 1.5924 1.2434 10.5467 20 6 1.4207 1.2393 11.9052 21 1 0.6584 1.8580 12.3551 22 6 2.2272 0.4405 12.7042 23 7 3.1566 -0.3132 12.1560 24 14 1.9926 0.4342 14.5574 25 1 0.6135 -0.0118 14.8803 26 1 2.9709 -0.4955 15.1771 27 1 2.2067 1.8046 15.0881 28 6 0.9399 1.9446 9.4239 29 6 2.5640 2.0886 6.1094 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5905 0.5106 -1.2953 34 1 3.5539 2.2880 -1.2055 35 1 2.6829 1.4883 -3.3853 36 1 1.4454 0.5292 -2.5390 37 1 1.4088 2.3065 -2.4493 38 1 3.5905 0.5104 1.2950 39 1 3.5540 2.2878 1.2056 40 1 3.5957 1.5262 3.7908 41 1 0.4246 -0.1588 5.0078 42 1 2.1613 -0.5987 5.0209 43 1 2.9715 2.5454 8.7752 44 1 2.1172 -0.4021 9.2508 45 1 3.5308 0.4811 9.9772 46 1 3.7199 -0.8716 12.7143 47 1 0.7175 2.9917 9.6296 48 1 0.0934 1.4039 9.0007 49 1 3.6327 1.9220 5.9751 50 1 2.3611 3.1509 6.2448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108566617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:03 Heat of formation + Delta-G solvation = 7.360755 kcal Electronic energy + Delta-G solvation = -28888.475525 eV Core-core repulsion = 24918.174072 eV Total energy + Delta-G solvation = -3970.301453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76165 -39.78984 -37.49918 -36.99327 -36.21819 -34.09826 -32.22397 -32.02434 -31.10709 -29.87484 -27.57019 -27.08865 -25.07392 -24.70827 -23.37952 -22.10294 -21.74733 -20.86749 -20.33525 -19.80394 -18.31861 -17.37603 -16.89850 -16.66471 -16.23900 -15.84114 -15.50439 -15.05206 -14.92731 -14.68775 -14.41870 -14.19678 -13.93304 -13.73764 -13.60961 -13.49474 -13.39390 -13.13851 -12.51201 -12.42827 -12.24895 -12.04360 -11.79824 -11.65934 -11.57185 -11.54090 -11.38192 -11.17580 -11.14038 -10.82387 -10.80310 -10.70809 -10.23711 -10.11650 -9.99544 -9.62237 -9.47409 -9.34876 -9.10419 -8.63620 -8.17612 -6.79997 -5.70879 -3.02858 2.22692 2.42157 2.74213 2.94379 3.32106 3.43654 3.48058 3.49385 4.20444 4.36028 4.41605 4.45183 4.52340 4.52703 4.81755 4.86773 4.89826 4.92270 5.04015 5.10712 5.13697 5.25425 5.32348 5.36197 5.38414 5.49057 5.54919 5.55180 5.60763 5.66790 5.71582 5.72692 5.76351 5.87138 5.88002 5.95920 6.18541 6.30707 6.53120 6.53581 6.59704 6.72022 6.88679 7.19497 7.30371 7.50343 7.60015 7.66160 7.98342 8.02880 8.56970 9.09999 9.75964 10.65318 11.46307 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.039877 B = 0.001897 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.998152 B =14758.315504 C =14927.106177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.135 4.135 8 C 0.513 3.487 9 O -0.525 6.525 10 N -0.724 5.724 11 C 0.137 3.863 12 H 0.109 0.891 13 C -0.166 4.166 14 C 0.515 3.485 15 O -0.508 6.508 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.221 4.221 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.111 3.889 29 C 0.099 3.901 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.402 0.598 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.254 0.746 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 6.191 -29.744 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.300 3.700 9 O -0.400 6.400 10 N -0.378 5.378 11 C 0.031 3.969 12 H 0.127 0.873 13 C -0.207 4.207 14 C 0.301 3.699 15 O -0.382 6.382 16 N -0.341 5.341 17 C -0.005 4.005 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.349 4.349 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.016 4.016 29 C -0.026 4.026 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.237 0.763 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.686 5.657 -28.989 29.658 hybrid contribution 0.405 -0.129 1.134 1.211 sum 3.091 5.528 -27.856 28.567 Atomic orbital electron populations 1.23716 0.95942 1.01392 0.98750 1.22620 0.95993 0.97022 1.01731 1.20160 0.96550 0.97183 0.92411 0.90040 1.21542 0.97854 1.01962 0.94021 1.21760 0.99843 1.02191 0.97111 1.21730 0.98720 1.04482 0.92547 1.20714 0.89342 0.75617 0.84369 1.90743 1.14742 1.48009 1.86497 1.46006 1.10143 1.76218 1.05384 1.21755 0.94787 0.96342 0.84031 0.87329 1.22812 1.05302 0.98258 0.94343 1.20630 0.78026 0.81214 0.90051 1.90785 1.45552 1.42760 1.59086 1.48496 1.55801 1.23548 1.06297 1.24089 0.99282 1.01248 0.75837 1.22784 0.96819 0.93199 0.84615 1.45653 1.38066 1.49167 1.00193 1.18944 1.15059 1.21561 0.79298 0.90238 1.24801 0.98620 0.98902 0.98130 1.69821 1.22813 1.30108 1.33932 0.86174 0.77298 0.77278 0.84840 1.21176 1.21562 1.21090 1.22932 0.94280 0.96157 0.88249 1.22190 0.98222 0.97200 0.84952 0.89179 0.88635 0.88083 0.91805 0.91814 0.92913 0.92364 0.92795 0.88704 0.88657 0.76315 0.87937 0.87967 0.87673 0.92335 0.91204 0.93620 0.93928 0.94330 0.90954 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 13.22 29.02 0.38 -1.05 16 2 C -0.16 -1.22 6.76 -36.02 -0.24 -1.46 16 3 C -0.04 -0.28 1.82 -91.77 -0.17 -0.45 16 4 H 0.08 0.64 7.60 -51.93 -0.39 0.25 16 5 C -0.12 -0.56 5.39 -26.73 -0.14 -0.71 16 6 C -0.15 -0.80 9.73 37.16 0.36 -0.44 16 7 C -0.13 -0.70 5.16 -27.89 -0.14 -0.84 16 8 C 0.51 4.26 7.58 -10.99 -0.08 4.18 16 9 O -0.52 -6.35 13.91 5.55 0.08 -6.27 16 10 N -0.72 -5.00 5.18 -52.23 -0.27 -5.27 16 11 C 0.14 1.30 3.43 -66.30 -0.23 1.07 16 12 H 0.11 1.14 7.73 -51.93 -0.40 0.74 16 13 C -0.17 -2.03 6.59 -26.74 -0.18 -2.21 16 14 C 0.51 8.87 7.44 -10.86 -0.08 8.79 16 15 O -0.51 -11.53 14.64 5.56 0.08 -11.45 16 16 N -0.61 -9.36 3.15 -166.64 -0.53 -9.89 16 17 C 0.10 1.88 4.82 -70.14 -0.34 1.54 16 18 C 0.15 3.82 6.88 -2.98 -0.02 3.80 16 19 N -0.60 -16.47 3.70 -178.10 -0.66 -17.12 16 20 C -0.22 -6.49 10.70 -15.06 -0.16 -6.65 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -28.32 11.38 55.49 0.63 -27.69 16 24 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.11 2.45 8.45 -2.97 -0.03 2.42 16 29 C 0.10 0.97 7.07 -3.12 -0.02 0.95 16 30 H 0.09 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.10 0.91 7.83 -52.49 -0.41 0.50 16 32 H 0.10 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.34 7.38 -51.93 -0.38 -0.04 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.40 1.65 8.37 -40.82 -0.34 1.30 16 41 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 43 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.06 1.63 5.58 -51.93 -0.29 1.34 16 45 H 0.07 1.89 7.15 -51.93 -0.37 1.52 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.91 7.41 -51.93 -0.38 0.52 16 49 H 0.07 0.57 7.77 -51.93 -0.40 0.16 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -37.07 401.95 -9.23 -46.30 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.42 Total: -1.08 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -1.18 Total: 8.61 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.82 Total: -59.98 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.16 Total: -17.72 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.07 -9.23 -46.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108566617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.666 kcal (2) G-P(sol) polarization free energy of solvation -37.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds