Wall clock time and date at job start Tue Mar 31 2020 18:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 120.00206 * 2 1 4 4 H 1.09004 * 109.46555 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47390 * 240.00562 * 3 2 1 6 6 C 1.53000 * 109.47060 * 64.99953 * 5 3 2 7 7 C 1.52997 * 109.47056 * 119.99970 * 3 2 1 8 8 C 1.50691 * 109.47514 * 295.00567 * 7 3 2 9 9 O 1.21290 * 120.00138 * 359.97438 * 8 7 3 10 10 N 1.34780 * 120.00607 * 179.97438 * 8 7 3 11 11 C 1.46493 * 120.00471 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.85966 * 322.66654 * 11 10 8 13 13 C 1.54631 * 110.96925 * 86.45188 * 11 10 8 14 14 C 1.51284 * 104.19461 * 142.91355 * 13 11 10 15 15 O 1.21281 * 124.94130 * 163.71443 * 14 13 11 16 16 N 1.34419 * 110.11565 * 343.75390 * 14 13 11 17 17 C 1.46505 * 124.34645 * 179.57304 * 16 14 13 18 18 C 1.53941 * 113.74473 * 36.64398 * 17 16 14 19 19 N 1.47583 * 86.11726 * 222.05001 * 18 17 16 20 20 C 1.36936 * 134.49381 * 204.64178 * 19 18 17 21 21 H 1.07998 * 120.00212 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99855 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00148 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00134 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47238 * 59.99716 * 24 22 20 26 26 H 1.48499 * 109.47373 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47027 * 299.99513 * 24 22 20 28 28 C 1.47586 * 91.01431 * 24.64048 * 19 18 17 29 29 C 1.46763 * 111.30166 * 359.58497 * 16 14 13 30 30 H 1.08002 * 119.99911 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00371 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.00423 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47153 * 304.99634 * 5 3 2 34 34 H 1.09001 * 109.46832 * 184.99825 * 5 3 2 35 35 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 38 38 H 1.09003 * 109.46810 * 55.00430 * 7 3 2 39 39 H 1.08998 * 109.47247 * 175.00299 * 7 3 2 40 40 H 0.97002 * 119.99149 * 359.97438 * 10 8 7 41 41 H 1.08992 * 110.48883 * 261.59308 * 13 11 10 42 42 H 1.09002 * 110.48406 * 24.24463 * 13 11 10 43 43 H 1.09004 * 112.94429 * 168.38297 * 17 16 14 44 44 H 1.08994 * 113.76859 * 336.34905 * 18 17 16 45 45 H 1.08997 * 113.76979 * 107.74980 * 18 17 16 46 46 H 0.96994 * 119.99926 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.76470 * 221.05717 * 28 19 18 48 48 H 1.08994 * 113.76481 * 89.66126 * 28 19 18 49 49 H 1.08996 * 110.24619 * 258.01789 * 29 16 14 50 50 H 1.09001 * 110.24222 * 136.01650 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 6 2.0562 1.4309 -2.4953 7 6 2.9431 1.3861 1.2492 8 6 2.0698 1.4299 2.4766 9 8 0.8626 1.3998 2.3633 10 7 2.6302 1.5025 3.7002 11 6 1.7812 1.5456 4.8933 12 1 0.8843 2.1372 4.7102 13 6 1.4163 0.1188 5.3646 14 6 1.4287 0.2124 6.8745 15 8 0.9299 -0.5994 7.6249 16 7 2.0723 1.3266 7.2634 17 6 2.2588 1.7288 8.6598 18 6 2.5042 0.5486 9.6172 19 7 1.5924 1.2434 10.5467 20 6 1.4207 1.2393 11.9052 21 1 0.6584 1.8580 12.3551 22 6 2.2272 0.4405 12.7042 23 7 3.1566 -0.3132 12.1560 24 14 1.9926 0.4342 14.5574 25 1 0.6135 -0.0118 14.8803 26 1 2.9709 -0.4955 15.1771 27 1 2.2067 1.8046 15.0881 28 6 0.9399 1.9446 9.4239 29 6 2.5640 2.0886 6.1094 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5905 0.5106 -1.2953 34 1 3.5539 2.2880 -1.2055 35 1 2.6829 1.4883 -3.3853 36 1 1.4454 0.5292 -2.5390 37 1 1.4088 2.3065 -2.4493 38 1 3.5905 0.5104 1.2950 39 1 3.5540 2.2878 1.2056 40 1 3.5957 1.5262 3.7908 41 1 0.4246 -0.1588 5.0078 42 1 2.1613 -0.5987 5.0209 43 1 2.9715 2.5454 8.7752 44 1 2.1172 -0.4021 9.2508 45 1 3.5308 0.4811 9.9772 46 1 3.7199 -0.8716 12.7143 47 1 0.7175 2.9917 9.6296 48 1 0.0934 1.4039 9.0007 49 1 3.6327 1.9220 5.9751 50 1 2.3611 3.1509 6.2448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108566617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:02 Heat of formation + Delta-G solvation = -18.760646 kcal Electronic energy + Delta-G solvation = -28889.608234 eV Core-core repulsion = 24918.174072 eV Total energy + Delta-G solvation = -3971.434162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89899 -40.67404 -39.00735 -37.97941 -37.22186 -35.16936 -34.15442 -32.56431 -32.06366 -30.78195 -29.17552 -28.33479 -26.62518 -25.73020 -25.10890 -22.80787 -22.41471 -22.11167 -21.45719 -20.36246 -19.78370 -18.80741 -18.05420 -17.81083 -17.52167 -17.00073 -16.48609 -16.33695 -16.01723 -15.65927 -15.51811 -15.33721 -15.09620 -14.85381 -14.65291 -14.50157 -14.30356 -14.06650 -13.84176 -13.61612 -13.42047 -13.27830 -12.96090 -12.85697 -12.80070 -12.67000 -12.57859 -12.25182 -12.10350 -12.02528 -11.97649 -11.93773 -11.61674 -11.51953 -11.29578 -11.10983 -10.84338 -10.61428 -10.06579 -9.90867 -9.58286 -8.95084 -7.93256 -5.28170 1.42467 1.47761 1.53688 1.57113 1.59748 1.79808 1.88868 2.26364 2.48373 3.24888 3.34938 3.46484 3.51498 3.77270 3.82841 3.91729 3.98520 4.01235 4.05446 4.23925 4.43544 4.46900 4.51635 4.52145 4.57962 4.64802 4.68636 4.73900 4.77037 4.83006 4.87718 4.90769 4.98005 5.09695 5.12955 5.13702 5.20134 5.22255 5.25030 5.45487 5.46809 5.50869 5.53749 5.84155 5.88928 5.90359 6.10707 6.24272 6.67342 6.87657 7.21315 7.41442 7.56412 8.52018 9.23775 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.039877 B = 0.001897 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.998152 B =14758.315504 C =14927.106177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C -0.045 4.045 4 H 0.062 0.938 5 C -0.111 4.111 6 C -0.154 4.154 7 C -0.128 4.128 8 C 0.509 3.491 9 O -0.568 6.568 10 N -0.708 5.708 11 C 0.153 3.847 12 H 0.101 0.899 13 C -0.152 4.152 14 C 0.502 3.498 15 O -0.575 6.575 16 N -0.605 5.605 17 C 0.137 3.863 18 C 0.147 3.853 19 N -0.635 5.635 20 C -0.240 4.240 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.986 3.014 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.268 1.268 28 C 0.111 3.889 29 C 0.100 3.900 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.421 0.579 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.140 0.860 44 H 0.024 0.976 45 H 0.043 0.957 46 H 0.249 0.751 47 H 0.070 0.930 48 H 0.019 0.981 49 H 0.106 0.894 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 8.385 -31.278 32.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C -0.064 4.064 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.212 4.212 7 C -0.167 4.167 8 C 0.297 3.703 9 O -0.446 6.446 10 N -0.363 5.363 11 C 0.046 3.954 12 H 0.119 0.881 13 C -0.194 4.194 14 C 0.291 3.709 15 O -0.454 6.454 16 N -0.338 5.338 17 C 0.033 3.967 18 C 0.021 3.979 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.813 3.187 25 H -0.208 1.208 26 H -0.218 1.218 27 H -0.193 1.193 28 C -0.016 4.016 29 C -0.022 4.022 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.259 0.741 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.037 0.963 49 H 0.124 0.876 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.860 7.916 -30.594 31.973 hybrid contribution -0.307 -0.833 1.515 1.756 sum 4.553 7.082 -29.079 30.274 Atomic orbital electron populations 1.23680 0.96705 1.00741 1.01101 1.22879 0.95705 0.98274 0.99619 1.20166 0.96644 0.95473 0.94110 0.91947 1.21517 0.97510 1.03224 0.92542 1.21780 0.99966 1.01373 0.98051 1.21770 0.98149 1.07002 0.89781 1.21342 0.89139 0.74459 0.85343 1.90752 1.16835 1.49895 1.87073 1.45821 1.10853 1.75501 1.04092 1.21458 0.95118 0.93840 0.84981 0.88066 1.22729 1.05447 1.00860 0.90328 1.21513 0.76864 0.80659 0.91868 1.90751 1.48276 1.45140 1.61214 1.48452 1.55173 1.23746 1.06421 1.23401 0.97646 0.98584 0.77061 1.22584 0.94722 0.94181 0.86454 1.46093 1.39409 1.50012 1.00602 1.19409 1.14972 1.21504 0.80974 0.89693 1.25744 0.98540 0.98785 1.03070 1.70036 1.23786 1.31002 1.35395 0.85055 0.76958 0.77818 0.78877 1.20835 1.21804 1.19286 1.23021 0.94886 0.96580 0.87073 1.22543 0.99825 0.97708 0.82167 0.89380 0.89973 0.87176 0.90783 0.90192 0.92018 0.93476 0.93417 0.86465 0.85600 0.74077 0.88879 0.86430 0.84266 0.95829 0.93875 0.94193 0.91237 0.96281 0.87579 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 13.22 67.79 0.90 -2.51 16 2 C -0.15 -2.14 6.76 25.66 0.17 -1.97 16 3 C -0.04 -0.48 1.82 -11.54 -0.02 -0.50 16 4 H 0.06 0.93 7.60 -2.39 -0.02 0.91 16 5 C -0.11 -0.75 5.39 30.59 0.16 -0.59 16 6 C -0.15 -1.41 9.73 71.98 0.70 -0.71 16 7 C -0.13 -0.82 5.16 29.84 0.15 -0.67 16 8 C 0.51 6.94 7.58 87.65 0.66 7.60 16 9 O -0.57 -13.05 13.91 -3.06 -0.04 -13.09 16 10 N -0.71 -6.96 5.18 -437.54 -2.27 -9.22 16 11 C 0.15 2.44 3.43 46.05 0.16 2.60 16 12 H 0.10 1.89 7.73 -2.39 -0.02 1.87 16 13 C -0.15 -3.56 6.59 30.59 0.20 -3.36 16 14 C 0.50 17.43 7.44 87.90 0.65 18.09 16 15 O -0.57 -27.58 14.64 -3.03 -0.04 -27.63 16 16 N -0.60 -17.66 3.15 -799.71 -2.52 -20.18 16 17 C 0.14 5.09 4.82 46.75 0.23 5.31 16 18 C 0.15 7.64 6.88 86.48 0.60 8.24 16 19 N -0.63 -35.27 3.70 -717.37 -2.65 -37.93 16 20 C -0.24 -14.34 10.70 84.03 0.90 -13.44 16 21 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 23 N -0.95 -60.59 11.38 21.65 0.25 -60.35 16 24 Si 0.99 47.57 29.55 68.60 2.03 49.60 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 C 0.11 4.86 8.45 86.48 0.73 5.59 16 29 C 0.10 1.54 7.07 86.83 0.61 2.15 16 30 H 0.09 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.08 1.69 7.83 -2.91 -0.02 1.67 16 32 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.05 0.53 7.38 -2.39 -0.02 0.51 16 37 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.42 1.19 8.37 -92.71 -0.78 0.42 16 41 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.12 2.40 8.08 -2.39 -0.02 2.38 16 43 H 0.14 4.31 8.14 -2.38 -0.02 4.29 16 44 H 0.02 1.41 5.58 -2.39 -0.01 1.40 16 45 H 0.04 2.43 7.15 -2.39 -0.02 2.42 16 46 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.02 0.93 7.41 -2.39 -0.02 0.91 16 49 H 0.11 1.05 7.77 -2.39 -0.02 1.03 16 50 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -87.85 401.95 2.17 -85.69 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.15 Total: 10.92 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 7.28 Total: 22.19 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -7.20 Total: -127.68 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.09 Total: -40.72 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -87.85 2.17 -85.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108566617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.925 kcal (2) G-P(sol) polarization free energy of solvation -87.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds